NeuroImage
○ Elsevier BV
Preprints posted in the last 7 days, ranked by how well they match NeuroImage's content profile, based on 903 papers previously published here. The average preprint has a 0.49% match score for this journal, so anything above that is already an above-average fit.
Karoui, H.; Bouke, N. J.; Cole, J. H.; Yeow, R. W.; Dick, F.; Razin, R.; Thomas, D. L.; Schroder, K. H.; Cash, D.; Bocchetta, M.; Williams, S. C.; Vasa, F.
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Background: Ultra-low field (ULF) magnetic resonance imaging (MRI) offers accessible point-of-care neuroimaging, yet its capability to support multivariate network analyses remains understudied. Methods: We systematically evaluated the feasibility and reliability of Morphometric Similarity Networks (MSN) and Morphometric Inverse Divergence (MIND) networks derived from paired high-field (HF, 3T/1.5T) and ULF (64mT) scans in a primary cohort(N=23) and an independent replication cohort (N=19). We tested the impact of super-resolution processing, cortical parcellation granularity (Desikan-Killiany vs. Destrieux), and mesh resolution (fsnative vs. fsaverage5) on edge-level cross-scanner agreement (Lin's concordance correlation coefficient, CCC) and subject-level identifiability. Results: MIND networks demonstrated higher edge-level HF-ULF agreement (mean CCC = 0.95) and ULF reproducibility (mean CCC = 0.98) compared to MSNs (mean CCC = 0.86-0.87 and 0.91-0.94, respectively). In contrast, MSNs yielded higher subject-level differential identifiability across field strengths due to a broader distinction between within- and between-subject similarity. Reconstructing MIND networks on native high-resolution meshes (fsnative) maximised cross-scanner agreement, whereas coarser meshes and finer cortical parcellations enhanced individual network identifiability. Conclusions: Structural similarity networks can be reliably constructed from ULF MRI data. Optimal analytic choices depend on study objectives: MIND on native meshes maximises cross-scanner stability, whereas MSNs excel at preserving individual uniqueness, paving the way for globally scalable connectomic research.
Hew, C. K. W.; Leserri, S.; Aydogan, D. B.; Bastin, M. E.; Bonthrone, A. F.; Paterson, K.; Barclay, G.; Jardine, C.; Smith, K. M.; Thrippleton, M. J.; Marioni, R. P.; Boardman, J. P.; Blesa Cabez, M.
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Structural connectomics provides a means of characterising white matter (WM) network organisation using diffusion MRI (dMRI), but reconstructing neonatal structural connectomes remains challenging due to the immature and heterogeneous nature of the developing brain. Although recent neonatal studies have increasingly adopted approaches beyond conventional diffusion tensor imaging (DTI), there remains scope to incorporate more advanced tractography and streamline post-processing approaches within neonatal pipelines. Here, we propose a neonatal structural connectome pipeline integrating surface-based anatomical constraints, ensemble tractography, hierarchical anatomical refinement of pathways (HARP) filtering, and spherical-deconvolution informed filtering (SIFT2) reweighting. We acquired 3T MRI data from 300 neonates (185 preterm, 115 term-born) to assess the impact of pipeline configuration on network organisation. Mean gestational age (GA) at birth was 29.31 (23.43-32.86) weeks in preterm infants and 39.52 (37.00-42.43) weeks in term infants. At scan, mean GA was 40.85 (36.29-49.00) weeks in preterm infants and 42.06 (38.29-48.00) weeks in term infants. Four connectome variants were generated: raw surfaced-based tractograms, HARP-filtered, SIFT2-weighted, and combined HARP+SIFT2. Pipeline performance was primarily evaluated using an existing brain age prediction model: connectome-based predictive model (CPM) and our derived connectomes to estimate GA at scan in term and preterm infants. In addition, global graph theoretical metric analyses were conducted to provide a complementary assessment of pipeline configuration differences in network organisation. In total, seven graph theoretical metrics were calculated and evaluated: global efficiency, local efficiency, transitivity, modularity, assortativity, degree variance and statistical complexity. Across all configurations, connectomes supported accurate brain age prediction, with mean absolute errors (MAE) of 0.76-0.79 weeks in term infants and 1.00-1.06 weeks in preterm infants. Prediction error and brain age gap variability were greater in preterm than term infants across configurations, with HARP+SIFT2 achieving the lowest preterm MAE (1.00 weeks) and brain age gap (BAG) variability (SD = 1.38 weeks). However, differences in prediction performance across configurations were minimal, suggesting limited influence of pipeline choice on brain age prediction. However, analysis of global network metrics demonstrated that pipeline choice significantly influenced downstream measures of network organisation, with HARP+SIFT2 being the only configuration to identify significant preterm vs. term differences across all seven metrics examined. These findings demonstrate the importance of considering tractography and streamline-processing choices when constructing neonatal structural connectomes and provide a framework for more anatomically informed investigation of early brain development.
Edelman, S.; Elias, U.; Arzy, S.
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Lesion network mapping (LNM) has provided a compelling framework in clinical neuroscience, linking focal brain damage at heterogeneous anatomical locations to shared functional networks across behavioural syndromes. Recently, the methodological specificity of LNM has come under discussion following observations that derived network maps tend to converge onto the normative connectome's generic degree distribution. While current efforts largely treat this convergence as a statistical inference challenge addressable via post-hoc spatial null models or individual-level analyses, we identify a foundational upstream measurement artifact operating within individual patients: the lesion "bystander effect". Because pathological lesions follow biological constraints rather than functional brain parcellations, a typical lesion encapsulates both a symptom-driving critical node and surrounding asymptomatic bystander tissue. By averaging connectivity profiles across the entire lesion mask, LNM mechanically dilutes focal clinical signals. Across empirical clinical cohorts, individual-level machine learning classifiers, synthetic within-cohort lesion unions, and whole-brain spherical simulations, we demonstrate that increasing lesion extent deterministically drives network maps toward the connectome degree vector following a mathematical power law. Fulfilling the clinical promise of LNM will therefore require computational strategies that isolate the causal functional core from surrounding bystander tissue prior to network projection.
Yarnykh, V. L.
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Purpose: Proton density (PD) and macromolecular proton fraction (MPF) are fundamental MR parameters characterizing water and macromolecular content in tissues. Both parameters can be mapped using a time-efficient MRI protocol, though PD maps require additional corrections for the reception profile (RP) non-uniformity and global scaling. Existing PD mapping methods suffer from uncertainties related to PD normalization to reference tissue. This study aimed to develop a data-driven RP correction method for PD mapping based on MPF as an internal scale. Theory and Methods: One-parameter model linking PD and MPF was derived under assumption of proportionality between total macromolecular volume and proton concentration. This model with a uniform parameter value across brain tissues generates a surrogate PD map, which is used to estimate RP from an uncorrected PD map. The proposed algorithm was tested against a common PD mapping method utilizing bias-field correction and normalization to cerebrospinal fluid. Brain MRI data were acquired at 3T from seven healthy individuals. The protocol included 3D multi-echo T1-, PD-, and magnetization-transfer-weighted gradient-echo sequences. Parametric maps were reconstructed using the single-point MPF mapping algorithm with data-driven B1 correction. Results: MPF-based and bias-field corrections yielded similar PD measurements in white and gray matter with no significant bias and remarkably small variability (coefficients of variation <0.6%). Conclusions: MPF-based RP correction enables computationally simple and robust quantitative PD mapping at no additional cost if MPF maps are available. The main advantage of the proposed method is automatic elimination of global scaling that obviates the need for PD normalization.
Nitola-Pulido, L.; Bonilla, D. S.; Herrera Murcia, E.; Reyes Gavilan, P. A.; Santamaria-Garcia, H.
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Exposure to armed conflict can leave persistent effects on mental health, yet its neurophysiological correlates remain poorly characterized, particularly in populations exposed to prolonged violence outside narrowly defined post traumatic stress disorder samples. Here we examined resting state electroencephalographic activity in 122 Colombian adults, including 74 participants exposed to armed conflict and 48 controls. Eyes closed EEG was analysed for 240 seconds per participant. We quantified absolute and relative spectral power across delta, theta, alpha and beta bands and regional functional connectivity using weighted phase lag index in theta, alpha and beta. Group comparisons were adjusted for age, education, sex and assessment year, with correction across 78 EEG contrasts. Median occipital and global alpha power was lower in exposed participants, although adjusted estimates were close to the null and confidence intervals were broad. Temporal theta relative power was lower in exposed participants at nominal significance, but this association did not survive Holm correction. No spectral power or regional connectivity contrast remained significant after multiple testing correction. Exploratory associations between EEG measures and MoCA performance were modest in participants with confirmed scores. These findings provide a systematic characterization of resting EEG after exposure to armed conflict in a population shaped by prolonged violence and displacement. They also indicate that large or widespread alterations in resting spectral power and connectivity were not detectable with the current sample and analytical framework, while defining candidate signals and methodological priorities for larger studies of conflict related brain health.
Beck, D.; Westlye, L. T.; Tamnes, C. K.
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Importance: Pediatric obesity affects 1 in 5 US children and has been linked to brain structural differences. Most evidence is cross-sectional and models body mass index (BMI) linearly, with metrics that compress severe obesity. Objective: To examine associations between brain structure and BMI for age across the weight spectrum and Centers for Disease Control and Prevention (CDC) weight status categories, distinguishing between and within person associations, and their age and sex moderation. Design, Setting, and Participants: Longitudinal cohort study of youth aged 8 to 10 years at baseline in the US community based Adolescent Brain Cognitive Development Study (4 waves, 2016 to 2025; ages 8 to 18 years). Exposures: Extended CDC BMI-for-age z-score, grouped by wave-mean z-score: underweight (<5th percentile, n=297), healthy weight (5th to <85th, n=7,452), overweight (85th to <95th, n=1,919), and obesity ([≥]95th, n=1,842). Main Outcomes and Measures: Cortical thickness (12 regions) and subcortical volume (7 regions) from T1 weighted magnetic resonance imaging (MRI), defined a priori. Results: Among 11,510 participants contributing 32,212 observations (mean [SD] age, 12.6 [2.5] years; 52.2% male), higher between person BMI for age z was associated with lower frontal and temporal thickness (6 regions) and larger subcortical volume (5 regions; all q < .001), but associations were nonlinear (17 of 19 regions). Youth with obesity had lower thickness than healthy weight youth in 8 frontal and temporal regions (largest, -0.21 SD; q < .001), with dorsal frontal differences decreasing across adolescence; underweight youth had smaller subcortical volumes. Higher BMI for age z was associated with larger subcortical volume (all 7 regions) within the healthy weight category and lower cortical thickness (11 of 12 regions; fusiform: {beta} = -0.27; q < .001) within the obesity category, steeper than in healthy weight youth in 10 regions, but not in overweight or underweight youth. Within person associations did not reproduce the obesity associations, reversed from negative at age 10 to positive at age 16, and were more negative in female than male participants. Conclusions and Relevance: Youth with obesity had lower cortical thickness than healthy weight peers, but associations between brain structure and BMI for age differed between CDC weight status groups, suggesting a complex relationship between adiposity and brain structure.
Martinez-Heras, E.; Alberich, M.; Shin, H.-G.; Sampedro, F.; GUZMAN, E. G.; del Agua, E.; Ochoa, N. M.; Garriga, J. S.; Rovira, A.; Pareto, D.
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Background: Quantitative susceptibility mapping (QSM) exhibits phase cancellation between paramagnetic (e.g. iron) and diamagnetic (e.g. myelin/protein) sources, obscuring microstructural lesion heterogeneity in multiple sclerosis (MS). We evaluated whether biophysical {chi}-separation identifies clinically meaningful lesion phenotypes and whether reduced echo sampling preserves microstructural sensitivity. Methods: In this cross-sectional study of 183 people with multiple sclerosis (PwMS), we analyzed 3327 quality-controlled white matter lesions using 3T MRI with a five-echo gradient-recalled echo sequence (GRE5) and a subsampled two-echo dataset (GRE2). A hybrid framework combining unsupervised clustering on whole-lesion paramagnetic ({chi}para) and diamagnetic ({chi}dia) features with rule-based compartmental edge-core gradient assignment resolved MS lesion phenotypes. Intralesional microstructural properties were evaluated using linear mixed-effects models. Multivariable linear regressions assessed associations with physical disability (Expanded Disability Status Scale, EDSS; n = 158), cognitive processing speed (Symbol Digit Modalities Test, SDMT; n = 79), and disease duration (DD; n = 161), with sensitivity models adjusting for total lesion volume, count, or DD. Results: The framework identified four reproducible lesion phenotypes (Adjusted Rand Index = 0.924): Type 1 (22.7%; preserved {chi}dia), Type 2 (32.9%; high {chi}para without positive edge-core gradient), Type 3 (35.8%; attenuated {chi}dia), and Type 4 (8.6%; high {chi}para with a positive edge-core paramagnetic gradient). Higher EDSS was selectively associated with more negative signed {chi}dia within Type 4 lesions (whole: {beta} = -0.37, q = 0.020; core: {beta} = -0.37, q = 0.006; edge: {beta} = -0.34, q = 0.030) and Type 2 edge ({beta} = -0.33, q = 0.044). Type 4 core associations remained robust across sensitivity models adjusting for total lesion volume ({beta} = -0.35, q = 0.004), total lesion count ({beta} = -0.37, q = 0.008), and DD ({beta} = -0.32, q = 0.033). Abbreviated GRE2 attenuated Type 4 compartmental associations to non-significance (all q greater than 0.05; core: {beta} = -0.20, q = 0.215). Conclusions: Quantitative {chi}-separation identified four internally stable susceptibility-defined MS lesion phenotypes, revealing disability-associated tissue heterogeneity beyond total lesion burden. Higher EDSS was associated with more negative diamagnetic measures within Type 4 cores after adjustment for lesion burden, pointing toward complex intralesional non-myelin tissue remodeling or reactive astrogliosis. Two-echo subsampling may influence compartment-specific clinical associations. By uncoupling susceptibility sources, {chi}-separation provides a quantitative framework for characterizing disability-associated lesion heterogeneity.
Cheng, Y.-W.; Chen, T.-F.; Li-Ying, L. K.-C.; Lo, R. Y.; Tsoh, J.; Chan, A. L.-T.; Wong, A.; Mok, V. C. T.; Yan, C. T.; Lu, C. J.; Sun, Y.; Wang, P.-N.; Lee, Y.; Ng, A.; Leng, F.; Chen, Y.; Li, C.-H.; Lin, C.-H.; Chuang, Y.-C.; Mandelli, M.-L.; Gorno-Tempini, M. L.; Tee, B. L.
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Syntax processing impairment is a defining feature of primary progressive aphasia (PPA), particularly in the nonfluent/agrammatic variant. However, current models are derived largely from Indo-European languages, and it remains unclear whether the cognitive and neuroanatomical mechanisms of syntax processing generalize to Chinese, an analytic, pro-drop language that encodes grammatical relationships primarily through word order and function words rather than inflectional morphology. Participants were recruited from the international Chinese Language Assessment in PPA cohort and included 64 individuals with PPA (19 logopenic, 15 nonfluent/agrammatic, 15 semantic, and 15 unclassifiable/mixed) and 60 cognitively healthy controls. Participants completed sentence comprehension and production tasks with systematically manipulated syntactic features. Item-level linguistic determinants were examined using ridge regression, diagnostic performance using receiver operating characteristic analyses, and neuroanatomical correlates using voxel-based morphometry of structural MRI. Performance on sentence comprehension and production was influenced by grammatical and lexical features. Subject-relative clauses, passive constructions, a higher proportion of function words, longer character length, and greater lexical content were associated with poorer performance among participants with PPA. Sentence comprehension was impaired in the logopenic, nonfluent/agrammatic, and semantic variants, even when isolated to the syntactic component of the sentence comprehension task. Similarly, sentence production was impaired across all PPA variants (all P < 0.01 versus controls). No significant differences were observed among PPA variants. Adjusted receiver operating characteristic analyses demonstrated high discrimination between each PPA variant and controls, with areas under the curve ranging from 0.87 to 0.97 for sentence comprehension-syntax and from 0.91 to 0.97 for sentence production. However, pairwise comparisons showed no significant differences in discriminative performance among PPA variants after correction for multiple comparisons. Both sentence comprehension-syntax and sentence production showed associations with semantic and repetition measures in addition to motor speech measures. Voxel-based morphometry showed that higher sentence comprehension-syntax scores were associated with greater grey matter volume in left frontotemporal and cingulate regions, whereas higher sentence production scores were additionally associated with greater gray matter volume in frontostriatal structures, including the caudate, putamen, and thalamus. Syntactic processing impairment in Chinese-speaking individuals with PPA extends beyond the nonfluent/agrammatic variant and is associated with distributed frontotemporal and frontostriatal regions, as well as lexical-semantic and auditory verbal short term memory mechanisms. These findings suggest that the cognitive and neural manifestations of syntactic impairment may be shaped by language-specific typological properties, underscoring the need for linguistically informed approaches to the assessment and interpretation of PPA.
Dörfel, R. P.; Ozenne, B.
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Estimating the correlation between subject-specific rates of change is a common objective in longitudinal studies. A natural approach is to fit ordinary least squares regressions per subject and correlate the resulting slope estimates directly. Under complete data, this slopes-first estimator is algebraically equivalent to a contrast-based plug-in estimator derived from the joint variance-covariance matrix of the two signals across time. Under independent dropout, however, the slopes-first approach implicitly applies heterogeneous weights across missing-data patterns, introducing bias whenever the cross-covariance between the two signals is not constant over time. We formalise this result and propose an unbiased alternative that estimates the joint covariance matrix before applying the contrast. We further extend our results to include covariates as well. Simulations confirm that the slopes-first estimator is biased under non-constant cross-covariance while the proposed alternative remains unbiased. Further, we show in a real-world example that the two estimators can lead to different scientific conclusions and recommend that researchers working with longitudinal data inspect the missing data pattern to make an informed decision about the estimator of choice.
Agyeman, K. A.; Lee, D.; Lee, B. P.; McGinn, R. J.; Abedi, A.; Russin, J.; Wu, K.; Choi, w.; Liu, C.; Christopoulos, V. N.
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Over 30% of patients with epilepsy are refractory to medication and may require surgical or neuromodulation-based intervention. Accurate localization of seizure-onset zones (SOZ) and assessment of treatment-associated brain responses remain major clinical challenges. Current workflows may involve invasive intracranial monitoring, prolonged hospitalization, adjustment of anti-seizure medications, and seizure capture to localize the SOZ, while opportunities for complementary intraoperative functional assessment remain limited. We used intraoperative functional ultrasound imaging (fUSI) to characterize interictal (i.e., non-seizure) cortical activity in nine patients with drug-resistant focal epilepsy and to assess treatment-associated brain responses following SOZ resection and responsive neurostimulation (RNS). fUSI signals were acquired directly from the exposed cortex during standard-of-care surgery. We developed six ultrafast power Doppler-based interictal activity markers (IaMs) to distinguish SOZ from peri-resection zone (PRZ) cortex and to quantify treatment-associated changes. The IaMs revealed distinct interictal hemodynamic dynamics between SOZ and PRZ cortex. Following SOZ resection, all six markers changed significantly within the surrounding PRZ. RNS also induced robust, stimulation paradigm-dependent modulation of cortical hemodynamic dynamics. Notably, RNS and surgical resection produced concordant directional changes across five of the six IaMs, despite representing fundamentally different therapeutic interventions. Together, these findings demonstrate the feasibility of intraoperative fUSI for characterizing and distinguishing interictal dynamics within SOZ and PRZ cortex and assessing treatment-associated cortical responses during human epilepsy surgery. Furthermore, fUSI could provide a complementary high-resolution functional imaging approach alongside established clinical methods for SOZ localization and intraoperative functional assessment.
Smikle-Bernard, R.; Blesa Cabez, M.; Vaher, K.; Amir, R.; Mckinnon, K.; Murphy, L.; Thrippleton, M. J.; Quigley, A. J.; Bastin, M. E.; Reynolds, R. M.; Whalley, H. C.; Marioni, R. E.; Cox, S. R.; Boardman, J. P.
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Preterm birth is strongly linked to systemic inflammation and encephalopathy of prematurity, which underlies subsequent cognitive impairment. T-cell immunity contributes to brain-immune crosstalk across the life course but its role in the pathogenesis of encephalopathy of prematurity is unknown. Protein epigenetic scores are DNA methylation (DNAm)-based proxies of circulating proteins. We tested the hypothesis that T-cell dysregulation has a specific role in child neurodevelopment following preterm birth. Multimodal data were collected from 144 preterm infants (median gestational age at birth 29+5 weeks [range 23+3 to 32+6]) recruited to a prospective cohort study: saliva DNAm for protein epigenetic score derivation and brain MRI, both at term-equivalent age, and the Mullen Scales of Early Learning Composite score at 5 years from a subset. We investigated associations of the epigenetic scores for cytotoxic and regulatory T cell-associated molecule (DNAm CRTAM) and C-reactive protein (DNAm CRP; a non-specific marker of inflammation) with MRI metrics of encephalopathy of prematurity: global and regional brain volumes, and general factors of diffusion tensor imaging and neurite orientation dispersion and density imaging metrics averaged across 42 white matter tracts. We tested whether DNAm CRTAM explains more variance than DNAm CRP in MRI metrics of the encephalopathy of prematurity and cognitive scores in childhood. Higher neonatal DNAm CRTAM was associated with lower general factor of fractional anisotropy ({beta} = -0.252, q = 0.011) and higher general factors of radial diffusivity ({beta} = 0.215, q = 0.039), mean diffusivity ({beta} = 0.198, q = 0.047) and orientation dispersion index ({beta} = 0.201, q = 0.048), independent of inflammatory morbidities and other biological covariates after false discovery rate correction. DNAm CRTAM explained more variance than DNAm CRP (maximum incremental R2 = 4.2% vs 1.5%) in diffusion MRI metrics. Higher neonatal DNAm CRTAM was associated with lower cognitive scores at 5 years, independent of DNAm CRP and other covariates ({beta} = -0.332, P = 0.008), and explained more variance in cognitive scores than DNAm CRP (incremental R2 = 9.4% vs 1.2%). An epigenetic proxy of CRTAM in preterm infants is associated with both encephalopathy of prematurity in the neonatal period and lower cognitive performance at 5 years, explaining greater incremental variance than a non-specific marker of inflammation. The data implicate T-cell dysregulation in the pathophysiology of atypical neurodevelopment following preterm birth.
Azamat, S.; Singh, A.; Midya, A.; Zhang, Z.; Gilkey, M.; Hajibonabi, F.; Sompalle, P.; Rastinehad, A.; Verma, S.; Kikano, E. G.; Sanda, M.; Hajiha, M. N.; Shiradkar, R.; Viswanath, S. E.; Madabhushi, A.
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Purpose: To evaluate whether visually assessed high-quality prostate MRI, as defined by the Prostate Imaging Quality (PI-QUAL) scoring system, is sufficient to ensure consistent AI model performance, or whether hidden acquisition-related technical effects introduce variability that cannot be detected through visual inspection. Methods: This retrospective study included 568 bpMRI scans from seven institutions, classified using PI-QUAL v2 into high-quality (scores 2-3) and low-quality (score 1) groups. Quantitative image quality features were extracted using MRQy from T2w and ADC sequences. Three experiments were conducted on high-quality scans: (1) unsupervised clustering to identify hidden technical batch effects; (2) V-Net models (M) for prostate capsule segmentation on T2w using single-cluster and balanced multi-cluster training strategies; and (3) VoxelMorph-based deformable registration (M2) to align ADC maps to T2w images. Performance metrics included DSC, precision, recall, volume ratio, HD95, ASSD, and TRE. Kruskal-Wallis tests assessed cross-cluster variability, Two One-Sided Tests (TOST) evaluated performance equivalence, and bootstrap resampling quantified training efficiency. Results: Clustering identified four clusters among 277 high-quality bpMRI scans. Single-cluster models showed variable performance (DSC=0.41-0.85) with significant batch effects (p<0.001), even with 140 training samples. The balanced multi-cluster model (n=60) eliminated batch effects (p=0.075), achieved equivalent performance (p<0.001), and demonstrated 2.23-fold greater training efficiency despite using 2.3-fold fewer samples. Registration performance also varied significantly across clusters (TRE=0.86-5.47 mm, p<0.001). Conclusion: Acquisition-related batch effects significantly impact AI generalizability in prostate MRI, even among high-quality scans. Quantitative clustering enables detection of technical variations and supports diversity-aware training strategies that achieve equivalent performance with 2.3-fold fewer samples while eliminating batch effects.
Dell'Orco, A.; Göschel, L.; Riemann, L. T.; Aydin, S.; Flöel, A.; Tietze, A.; Scheel, M.; Fillmer, A.
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Introduction: This study aimed to characterize the neurochemical profile of Alzheimer s disease (AD) continuum stages using proton magnetic resonance spectroscopy (1H-MRS) data for brain metabolites and macromolecules. We used Orthogonal Projection to Latent Structures Discriminant Analysis (OPLS-DA) to classify diagnostic groups and assess feature importance. Methods: Our dataset consisted of 7 T short-echo time 1H-MRS spectra of the posterior cingulate cortex/precuneus of individuals diagnosed with AD (n = 27) or Mild Cognitive Impairment (MCI, n = 27) and Healthy Controls (HC, n = 31). Classification used 100-round Monte Carlo cross-validation based on metabolite concentrations and macromolecular peak intensities. Variable importance in projection (VIP) was assessed across classification models to identify the most relevant neurochemical features. The resulting metabolite rankings were compared with previous literature to evaluate their biological plausibility. Results: Classification was strongest for AD versus HC (AUC=0.88) and lower for comparisons involving MCI. Metabolites contributing most strongly to classification included myo-inositol, ascorbate, and choline-containing compounds, consistent with previous studies on AD-related neurochemical alterations. In addition, specific macromolecular components were identified as relevant features, suggesting a potential contribution of MM signals to the characterization of AD-related neurochemistry. Discussion: These findings support the use of short-echo-time 1H-MRS as a complementary tool for characterizing neurochemical changes in the AD continuum, with potential applications in disease characterization and monitoring, warranting validation in larger cohorts.
Pinheiro, A.; Cheng, H.; Karjadi, C.; Gifford, K.; Demissie, S.; Lunetta, K. L.; Liu, C.; Au, R.; Mohammed, S.
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INTRODUCTION: The digital clock drawing test (dCDT) is a cognitive screening tool capturing high-resolution pen-movement data. Existing approaches for classifying cognitive impairment from dCDTs rely on selected features or image-based methods. We propose representing dCDTs as structural networks to classify cognitive impairment and characterize spatial organization in clock drawings. METHODS: Weighted networks were constructed from 3,362 Framingham Heart Study participants, with and without cognitive impairment. Network representations were generated separately for command and copy conditions, with nodes representing pre-defined clock components (digits, hands, clock face) and edges capturing pairwise spatial relationships between components. Random forest models and graph convolutional networks were trained to predict cognitive impairment from the networks. Models were benchmarked against demographics-only and established summary feature baselines. RESULTS: Network-based models achieved AUC values comparable to the established summary feature baseline across command-only and copy-only conditions. Differences in spatial organization between the cognitively intact and impaired groups were greatest in the upper-right clock region, involving digits 1 and 2, the clock hands, and the surrounding clock face. Differences between the command and copy networks were larger among cognitively impaired participants. DISCUSSION: The proposed network representations provide an objective, scalable, and flexible framework for representing clock drawings for use in classification models. dCDT networks matched the predictive performance of established summary feature-based approaches and identified clock regions where spatial organization differed by cognitive status. After external validation, this approach has the potential to be incorporated within a clinical workflow to support automated and interpretable cognitive screening.
Gonzalez, A. I.; Tristao-Pereira, C.; Martinez, L.; Ramirez, N. J.; Aquilino Silva, G.; Alcina, J.; Martinez, J. E.; Giudicessi, A.; Ku, V.; Rowe, M. C.; Ramirez-Gomez, L. A.; Saldana, D. G.; Quiroz, Y. T.
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Introduction: Cognitive intraindividual variability (IIV), a measure of fluctuation in performance across time or tasks, is an emerging marker of cognitive decline. However, little is known about within-domain IIV in Latino adults. To address this gap, we examined memory IIV and hippocampal integrity in older Latino individuals. Methods: Sixty-seven participants from the Boston Latino Aging Study underwent cognitive testing and MRI. Linear regressions assessed whether memory IIV was associated with hippocampal volume and hippocampus-cingulum tract fractional anisotropy. Additional analyses evaluated associations using mean memory performance as the outcome. Results: Higher mean performance was associated with greater hippocampal volume (=0.24, p=.03), while memory IIV was not (=0.028, p=.84). Higher memory IIV was associated with lower fractional anisotropy in the hippocampus-cingulum tract (=-0.34, p<.01), while mean performance was not (=-0.07, p=.52). Discussion: Memory IIV may be more closely linked to hippocampal white matter, while mean memory performance may better reflect hippocampal volume.
Roudbari, A.; Van Hentenryck, P.; Zandehshahvar, R.
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Longitudinal clinical cohorts contain heterogeneous progression patterns that are obscured by coarse diagnostic labels. Discovering these latent progression phenotypes requires models that distinguish patients not only by their outcomes, but also by how their clinical trajectories evolve. This paper proposes TRACE, an interpretable temporal phenotyping method that enables the learning of outcome-informed progression phenotypes from longitudinal trajectories. TRACE combines a trajectory- and outcome-aware contrastive objective with a probabilistic predictive phenotype layer, encouraging phenotypes to capture progression structure while remaining predictive of diagnostic state. A dual-attention mechanism further supports interpretation by identifying the visits and clinical variables most associated with each phenotype assignment. TRACE is evaluated on the Alzheimer's Disease Neuroimaging Initiative (ADNI) cohort for cognitive disease modeling, showing improved performance in both diagnostic prediction and phenotype discovery compared with other temporal phenotyping baselines. Finally, by allowing the number of phenotypes to exceed the diagnostic labels, TRACE enables discovering additional progression patterns that are not captured by labels defined a priori.
Badea, A.; Xu, J.; Laskowitz, D. T.; Badea, C. T.
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INTRODUCTION: Whether APOE e4 modifies relationships between subclinical cardiac phenotypes and brain structure is unknown. METHODS: In Framingham Heart Study Offspring participants, we related antecedent echocardiographic remodeling (Examinations 4-6) to repeated brain MRI, and cardiac magnetic resonance phenotypes to regional cortical morphometry, testing cardiac x APOE e4 interactions with false-discovery-rate (FDR) correction and permutation testing of the regional screen. RESULTS: APOE e4 modified the association between antecedent left atrial (LA) remodeling and subsequent lateral ventricular expansion (beta=-0.00858, P=1.45 x 10^-4, q=0.0023; N=1,305; 3,787 MRI observations), the only FDR-significant result of 16 longitudinal tests, including with participant-specific MRI-time slopes (q=0.034); it weakened when intracranial volume x MRI time was modeled. Four regional ventricular cardiac x APOE e4 interactions met within-family FDR criteria, but their number was consistent with chance (permutation P=0.70). Maximum LA volume index showed an APOE e4-dependent association with left middle-occipital cortical-thickness variability (whole-brain q=0.017; permutation P=0.041) that persisted after ventricular adjustment. Cardiac phenotypes and trajectories showed no FDR-significant APOE e4-dependent associations with plasma Abeta42/40, p-tau181, GFAP, or NfL, and adjustment for these biomarkers changed the regional interactions by at most 3.2%. Allen Human Brain Atlas data showed cholesterol-biosynthesis enrichment in the right superior frontal cortex, implicated by the LV end-systolic volume interaction, but without convergent pathway evidence. DISCUSSION: APOE e4 modified atrial-brain relationships, with the strongest evidence linking antecedent atrial remodeling to later ventricular expansion. Replication with prespecified models is needed.
Scratch, S.; Gill, P. K.; Hickling, A.; Irvin, A.; Zamyadi, R.; Parimoo, S.; Johnston, P. R.; Davis, A. L.; Ibrahim, G. M.; Dunkley, B. T.; Wheeler, A. L.
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BACKGROUND: One in three adolescents with a concussion history report experiencing long-lasting somatic, sleep, emotional, and/or cognitive disturbances (persisting symptoms after concussion (PSaC)). Cognitive difficulties, such as attentional problems, are common symptoms and can interfere with ongoing development. Clinically, psychiatric symptoms also present in youth with PSaC. A concussion causes diffuse functional and microstructural alterations to neural networks. To develop targeted treatments for PSaC (e.g., neurostimulation), we need to understand how and where structural alterations and neural dysfunction intersect to cause long-lasting symptoms. OBJECTIVES: 1) Identify functional and microstructural properties in intrinsic connectivity networks, as well as neuropsychological outcomes, that differentiate adolescents with concussion with PSaC from those who do not have PSaC. 2) Determine whether neural activity within intrinsic connectivity networks mediates the relationship between network microstructure and specific neuropsychological features in adolescents with concussion. METHODS: CAMBY is a prospective study of adolescents aged 12 to 18 years with a history of concussion. Participants are allocated based on recovery status (PSaC vs. No-PSaC (recovered controls)). Advanced structural (magnetic resonance imaging; MRI) and functional (magnetoencephalography; MEG) neuroimaging and neuropsychological measures will be collected one month or more after concussion. Microstructural and functional features will be computed within intrinsic connectivity networks, then compared between PSaC and recovered control groups and related to symptom domains and neuropsychological profiles. IMPACT: This will be the first study to integrate MRI, MEG, and neuropsychology in adolescents with PSaC to identify disrupted networks underlying PSaC. This observational study is a necessary step towards future clinical trials that accurately target promising therapeutic neurostimulation protocols.
Barbosa, M. M.; Pentiado, J. A. M.; Kubota, G.; Martins, P. N.; Moreira, L. I.; Fernandes, A. M.; da Silva, V. A.; Junior, J. R.; Figueiredo, E. G.; Yeng, L. T.; Teixeira, M. J.; de Andrade, D. C.
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Background: Although opioids are frequently prescribed for refractory chronic neuropathic pain, few data are available on baseline factors that may identify individuals more likely to respond and inform individually tailored practice. Methods: This was a post hoc, exploratory analysis of individual-level data from a placebo-controlled trial of methadone for chronic neuropathic pain (NCT05235191). Baseline clinical, psychological, psychophysical and radiological variables were tested for association with 30% or more pain reduction in the methadone group. The correlation between expectation of improvement and pain reduction was examined in both groups. Results: Of the 81 participants completing the 8-week follow-up, 28 (70%) on methadone and 14 (34.1%) on placebo achieved 30% or more pain reduction. In the methadone group, responders had higher baseline expectation of improvement (median 100 [80-100] vs. 55 [50-81]; p=0.004), which correlated moderately with percentage pain reduction (rs=0.508; p<0.001). Neither finding was observed in the placebo group (p=0.211 and p=0.161, respectively), although the correlation did not differ significantly between groups (p for interaction=0.728). Other clinical, sociodemographic, psychological and psychophysical variables were not associated with response. In the subsample with peripheral neuropathic pain and structural MRI (n=37), lower left precentral cortex volume was associated with response to methadone (p=0.041), and lower right paracentral volume with response to placebo (p=0.003). Conclusions: Baseline expectation may influence treatment outcomes, supporting its inclusion as a covariate to improve the precision of treatment effect estimates in trials, and its use in clinical practice to help tailor treatment to individual patients. These exploratory findings require confirmation in larger studies.
Eisenstein, T.; Hu, M. T.; Klein, J. C.
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INTRODUCTION: The basal forebrain (BF) provides the principal cholinergic innervation to the cortex and the hippocampus and is among the earliest regions affected by neurodegenerative processes. Yet, whether its subnuclei differ in how their structural integrity changes with age and in their vulnerability to neurological and psychiatric disorders is unresolved. METHODS: Here, in 81,870 UK Biobank participants aged 45-87 years, we built age- and sex-specific normative models of grey-matter volume in the nucleus basalis of Meynert (Ch4) and the septal/diagonal-band (Ch1-3) compartments of the BF and derived individual deviation from these norms. We then tested the selectivity of their normative deviation profile across cross-sectional and longitudinal ageing, manifest neurological and psychiatric disorders, pre-diagnostic neurodegeneration, prospective disease incidence, and neuropsychiatric polygenic liability. RESULTS: The two compartments followed distinguishable age-related profiles across mid-to-late adulthood, which persisted when examined using longitudinal data. Deviation from norms was generally concentrated in Ch4 across neurological diseases and, in almost no condition, greater in the Ch1-3. The Ch4 deficit was further detectable years before diagnosis, was not substantially explained by common inherited genetic risk, and was linked with incident dementia and Parkinson's disease, whereas Ch1-3 carried no independent prospective structural vulnerability. DISCUSSION: These findings identify an anatomically specific age-related profile of the human BF, with structural vulnerability manifest and pre-diagnostic neurological disorders, which is not substantially explained by common inherited risk.