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FACETS

● Canadian Science Publishing

Preprints posted in the last 90 days, ranked by how well they match FACETS's content profile, based on 14 papers previously published here. The average preprint has a 0.01% match score for this journal, so anything above that is already an above-average fit.

1
Mapping Coastal Forest Retreat Using Convolutional Neural Networks and Different Satellite Imagery

Tajudeen, T. T.; Ardon, M.; Tulbure, M.; Martin, K. L.

2026-08-22 ecology 10.64898/2026.08.18.745552 medRxiv
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Coastal forests are increasingly threatened by saturated soil and elevated salinity levels resulting from sea level rise, saltwater intrusion, and storm surges. In response to rising salinization and flooding, healthy coastal forests that rely on freshwater (both wetland forests and low-elevation upland forests) are transitioning into landscapes dominated by dead or dying trees, known as ghost forests. Situated among salt-tolerant shrubs and grasses, ghost forests eventually become marshes or open water. Here, our main objective was to quantify the dynamics and pathways of these forest landscape conversions, as well as the factors contributing to the changes, which is vital for understanding the progression of coastal ecosystem degradation and forecasting future changes. We focused first on identifying the best method to track forest landscape change by exploring the role of multiple remote sensing indices (i.e., multispectral, bi-seasonal, topographical, and phenological metrics) in enhancing the performance of deep learning models (convolutional neural networks, CNNs) for land cover classification in the coastal plain of North Carolina using surface reflectance of Landsat 8 and Sentinel-2 images. Then, we used the best available data (Landsat 8) to understand long-term change and identify patterns of land cover change from 1985 to 2021. Our study reveals that incorporating phenology and topographical indices enhances the separability of the ghost forests class from all other vegetation classes. In our assessment, the higher-resolution Sentinel-2 data (F1 Score = 96.3) outperformed Landsat images (F1 score = 93.4) for the 2021 co-available year. However, Landsat remains an important tool used due to its long-term data record. Therefore, we used Landsat to determine that 21% of forests were lost between 1985 and 2021, and that the rate of loss is increasing. Between 2010 and 2021, 23,876 ha of forest were converted to marsh, ghost forest, and shrub, which is 1.5 times higher than the 16,968 ha lost between 1985 and 2010. These conversions from forest to ghost forest and marshes were driven primarily by proximity to the channel, salinity, and the increasing rate of relative sea level rise (RSLR), which are the key environmental drivers of observed changes. By quantifying these changes, we highlight regions most vulnerable to environmental stressors, providing a basis for targeted conservation strategies.

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Pervasive effect of bottom trawling on benthic biodiversity unravelled by metabarcoding across the Tree of Life

Beaulieu, C.; Vaz, S.; Henault, T.; Labrune, C.; Barras, C.; Schweizer, M.; Rzeznik-Orignac, J.; Maillet, G.; Pruski, A.; Henry, N.; Arnaud-Haond, S.

2026-10-11 genetics 10.64898/2026.10.05.756630 medRxiv
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Bottom trawling is the most widespread human disturbance on the seafloor, known to affect seabed structure and benthic biota. Yet, its impact on benthic communities remains documented mainly for taxa identifiable through morphology, leaving microscopic benthic communities largely overlooked. The Gulf of Lion continental shelf has been trawled for decades by French and Spanish fleets, to the point that encountering untrawled reference areas became elusive. Here, we examined prokaryote, protist and Animalia benthic communities at eight stations, using eDNA metabarcoding of core sediment samples, with five primer-pairs. Benthic communities were cross-referenced with contrasted trawling impacts, integrated across three periods: over one month, three years or ten years preceding the sampling. The community composition was primarily structured by ecological habitats, yet, trawling pressure showed association with prokaryotes and Animalia diversity. Diversity was higher at sites trawled more intensively in the preceding month, whereas long-term trawling was associated with a significant erosion of Animalia alpha diversity. Unexpectedly, communities did not display consistent vertical structure and the relative contributions of trawling and hydrodynamic reworking remain unresolved due to the absence of untrawled sites. Overall, our results show that trawling effects extend to prokaryotic compartments rarely considered in impact assessments, providing a proof of concept for eDNA-based assessment, and underline a pervasive long-term effect on Animalia communities. This study also highlights the importance of the timescale used to quantify fishing pressure and underscores the complexity of impact assessment when monitoring begins too late to establish a clear baseline, particularly when no reference site remains.

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High cryptic diversity of invertebrates in varying nearshore habitats of the Beaufort Sea

Heiser, S.; Salel, L.; Schonberg, S.; Erdner, D. L.; Dunton, K. H.

2026-09-12 ecology 10.64898/2026.09.08.750166 medRxiv
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The Alaskan Beaufort Sea lagoon system supports a diverse invertebrate community shaped by a complex glacial and biogeographic history, yet it remains severely understudied relative to the rapid environmental changes it is experiencing. As Arctic amplification accelerates habitat loss, shifts dispersal pathways, and facilitates the introduction of boreal and invasive species, accurately documenting current biodiversity is increasingly urgent. In this study, we used DNA barcoding of the mitochondrial cox1 gene for various invertebrates, and the nuclear 28S rRNA gene for Porifera, to examine invertebrate genera across coastal sites in the Alaskan Beaufort Sea, including the unique Boulder Patch kelp community in Stefansson Sound. We sequenced specimens belonging to five phyla: Annelida, Arthropoda, Mollusca, Porifera, and Priapulida. Specimens were identified by morphology, and their cox1 or 28S rRNA gene sequences were matched against the GenBank and Barcode of Life Data Systems (BOLD) databases. Molecular identification revealed substantially higher species diversity than morphology alone in three of five phyla: Annelida (12 versus six species), Arthropoda (14 versus 11), and Mollusca (five versus four). In Porifera and Priapulida the number of species were the same for morphological and molecular identification; however, we still found different species identifications between the two methods. Other notable findings include the discovery of multiple cryptic species within Terebellides sp., Pontoporeia femorata, Onisimus litoralis, and Micronephthys minuta, as well as the first published sequences for Acanthostepheia incarinata, Haliclona gracilis, Onisimus affinis, and Saduria sibirica. Our results highlight the extent to which morphology-based surveys underestimate invertebrate diversity in Arctic ecosystems and underscore the need for comprehensive surveys and molecular reference databases to support future molecular-based biodiversity monitoring in this rapidly changing region.

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Multimorbidity and Medication Order Patterns in Skilled Nursing Facilities: A Real-World Evidence Study

Ashraf, H.; Tsasis, P.; Mathers, K. E.; DiSanto, L.; Wong, A.; Sharma, D.; Heffernan, J. M.; Wagner, B.; Saumur, T. M.

2026-09-23 geriatric medicine 10.64898/2026.09.22.26363593 medRxiv
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BackgroundMultimorbidity is common among U.S. skilled nursing facilities (SNFs) residents and complicates pharmacologic management, yet real-world evidence on treatment patterns in this population remains limited. This study evaluated medication order rates and identified resident- and facility-level factors among SNF residents with multimorbidity. MethodsRetrospective, observational study using electronic health record (EHR) data from PointClickCares Life Sciences database. Participants were 728,222 residents active in a U.S. SNF on April 30, 2025 with at least one documented diagnosis of hypertension, hyperlipidaemia, type 2 diabetes (T2D), depression, or Alzheimers disease and related dementias (ADRD). The outcome was presence of guideline-recommended medication order for each condition, modelled with modified Poisson regression to estimate adjusted prevalence risk ratios (RRs) and 95% confidence intervals. ResultsMedication order rates were 79% for ADRD, 79.1% for T2D, 87.7% for hypertension, 83.3% for hyperlipidaemia, and 90.8% for depression. Rates varied across comorbidity combinations: ADRD was associated with lower medication order prevalence, while cardiometabolic multimorbidity profiles associated with higher prevalence. Black/African American identity had the lowest likelihoods of a medication order for 3 of 5 conditions (RRs of 0.93 to 0.92), while having hypertension or hyperlipidaemia medication order was associated with higher likelihood of having orders for 3 of remaining 4 conditions (RRs of 1.02 to 1.19). ConclusionsMost SNF residents with multimorbidity had a medication order for common chronic conditions, although important variability and disparities remain. Differences by comorbidity profile and social context underscore the need for targeted strategies supporting equitable, integrated prescribing and person-centred care in SNFs.

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Characterizing benthic community structure across Western Pacific seamounts to ~5,000 m depth: Implications for conservation

Huang, J.; Lu, X.; Sun, D.; Fortin, M.-J.

2026-07-31 ecology 10.64898/2026.07.30.741913 medRxiv
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AimSeamounts are key components of deep-sea ecosystems. Yet, their biodiversity patterns and conservation needs remain poorly understood, presenting a critical knowledge gap as they face multiple environmental stressors. Here, we aim to characterize benthic community structure across multiple seamounts along the Kyushu-Palau Ridge (KPR) and identify conservation priorities. LocationPhilippine Sea in the Western Pacific. Major taxa studiedDeep-sea benthos. MethodsWe surveyed six transects (13.3{degrees}N-22.9{degrees}N; 614-5,055 m depth; 165 kilometers in total length) using a towed camera system, yielding 31,342 images and 14,218 identified individuals. Community structure was assessed through species depth-range overlap analysis to distinguish nestedness versus turnover patterns. {beta}-diversity was partitioned into local contributions (LCBD) and species contributions (SCBD) to evaluate site-level uniqueness and species-level influence. Generalized linear mixed models were used to relate LCBD and SCBD to depth, slope, aspect, bathymetric position, and functional traits. ResultsCommunity structures varied among slopes and seamounts. Western, steeper slopes were dominated by nestedness, whereas gentler eastern slopes showed mixed patterns of nestedness and gradual turnover. Sessile species largely exhibited nestedness, while mobile taxa showed mixed structures. LCBD declined with depth overall but increased on north-facing slopes and sites with higher broad-scale bathymetric position. Wide-ranging generalist species, particularly among Echinoidea and Holothuroidea, contributed disproportionately to {beta}-diversity. Main conclusionsSeamount benthic communities along the KPR are structured by interactions between depth, geomorphology, and species ecological breadth. The dominance of nestedness on western slopes suggests that protecting shallow, species-rich habitats could capture much of the biodiversity therein. In contrast, the mixed structures on eastern slopes indicate the need for a hybrid conservation approach that includes both shallow summits and deeper, compositionally distinct zones. Our findings highlight the importance of slope-specific, depth-informed strategies to conserve these vulnerable marine ecosystems.

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Mapping scientific cosmopolitanism: scientists with publication records substantially split across multiple countries

Ioannidis, J.; Baas, J.

2026-10-06 scientific communication and education 10.64898/2026.10.01.755970 medRxiv
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We used Scopus data on 243949 top-cited scientists to map scientific cosmopolitanism defined as having at least two different countries that contribute alone at least 10 percent of an author published record as indexed in Scopus. 20.4 percent of the top-cited authors were cosmopolitan based on this definition. Based on current author affiliation, rates varied widely from 9% to 76% across countries with at least 250 top-cited authors. Countries with few top-cited authors had almost always high rates of cosmopolitanism. The proportion of top-cited authors who are cosmopolitan has steadily increased over time in younger generations among those who started publishing after 1965 reaching 43% recently. Large differences were also seen across scientific subfields from 1% in General Psychology and Cognitive Sciences to 46% in Econometrics. Across the 30 country pairs that were most over-represented, countries shared borders, languages, most common religion pairs, or any of these features in 15, 19, 26, and 29 cases, respectively. The map of cosmopolitan authors reveals a large and increasing proportion of the most influential scientists who share two or more scientific homes that each has made a substantial contribution to their career. Cosmopolitanism among scientists requires better study to help facilitate its potential positive contributions not only to individual scientists but to science and society more broadly.

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Predicting taxon-specific benthic cyanobacterial mat cover and anatoxin concentrations in northern California rivers

Zabrecky, J. M.; Elliott, T. A.; Hickey, M.; Bouma-Gregson, K.; Boyer, G. L.; Fadness, R.; Genzoli, L.; Goel, R.; Johnson, G.; Shriver, R.; Stancheva, R.; Thomas, M.; Triumph, Z.; Blaszczak, J. R.

2026-09-09 ecology 10.64898/2026.09.04.748937 medRxiv
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Ecological forecasts often rely on established relationships between the ecological process of interest and predictor variables that are more easily measured. Proliferations of benthic (i.e., bottom-dwelling) cyanobacteria have been increasingly observed in rivers globally and are an emerging ecological forecasting issue as they pose a public health threat due to the production of potent neurotoxins known as anatoxins. Controls on these benthic cyanobacteria are poorly understood, thus predicting or forecasting their extent and anatoxin production is a significant challenge. Here, we measured benthic cyanobacterial cover and anatoxin concentrations for two common taxa associated with anatoxins (Microcoleus and Anabaena) at biweekly to weekly intervals during June to September in 2022 and 2023 in three northern Californian rivers. We then built predictive models to test how incorporation of a biotic predictor (river reach-scale gross primary productivity [GPP]) affected predictive accuracy in addition to widely measured abiotic predictors (i.e., nutrients, discharge, and temperature). Temporal patterns in taxon-specific benthic cyanobacterial cover and anatoxin concentrations were highly variable among rivers and between taxa. While Microcoleus cover peaked in rivers during periods of relatively low GPP, there were no clear relationships between GPP and Anabaena cover nor anatoxin concentrations of either taxon among rivers. Among multiple reaches sampled weekly in the South Fork Eel River, magnitudes of taxon-specific benthic cyanobacterial cover and anatoxin concentrations differed, but the timing of peak taxon-specific cover and anatoxin concentrations were generally consistent. Furthermore, Anabaena displayed a hysteresis relationship where increases in cover were followed by increases in anatoxin concentrations while Microcoleus lacked such relationship. While incorporating GPP as a covariate improved our predictions of Anabaena cover, we had more success predicting Microcoleus cover than Anabaena cover due to its strong negative relationship with discharge. In contrast, our models predicting Anabaena anatoxin concentrations outperformed those predicting Microcoleus anatoxin concentrations due to the hysteresis relationship between Anabaena cover and anatoxins. Overall, our predictive modeling results highlight the application of ecological forecasting for benthic cyanobacterial cover and anatoxin concentrations in rivers and demonstrate the importance of incorporating taxon-specific predictors into future forecasts of benthic cyanobacteria.

8
Inverted trophic pyramids and transient fish community reorganization in large reservoirs

Sepulveda Correa, A.; Turgeon, K.; Rodriguez, M.

2026-09-22 ecology 10.64898/2026.09.21.753197 medRxiv
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The rapid global expansion of dams has significantly reshaped freshwater ecosystems, yet long-term trophic dynamics and food-web stability within reservoirs remain underexplored. This study examines the reorganization of fish communities induced by the trophic surge following dam construction and river impoundment. We used the predator-to-consumer mass ratio (PCMR) as a proxy for trophic pyramid structure to track changes in fish biomass distribution across three large boreal reservoirs in Quebec, Canada, over 20 years, using data from before and after impoundment. We found transient top-heaviness events (i.e., PCMR values > 1; predator accumulation), characterized by a hump-shaped trajectory of the PCMR values in two reservoirs (Opinaca and Robert Bourassa). The third reservoir (Caniapiscau) showed a gradual increase in top-heaviness but did not exhibit a clear transient pattern. The magnitude and duration of top-heaviness varied across reservoirs, potentially due to differences in the system's capacity to receive and accumulate nutrients, which are driven by water residence time and reservoir size. This research provides a conceptual framework for understanding the long-term trophic dynamics of reservoirs, which can help inform the development of more effective management strategies to preserve ecological health in these ecosystems.

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A Bayesian hierarchical analysis of trends and risk to identify regional conservation priorities of Chinstrap Penguins

Kruger, L.; Adasme, L.; Montenegro, C.

2026-08-05 ecology 10.64898/2026.08.04.742810 medRxiv
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Chinstrap penguins (Pygoscelis antarcticus) in the Antarctic Peninsula and Scotia Arc regions (CCAMLR subareas 48.1 and 48.2) have experienced substantial declines, yet uncertainty remains about regional variation and conservation priorities. We applied a Bayesian hierarchical model to 1,072 nest counts from 194 colonies (1970 to 2024) to quantify population trends, estimate probabilities of exceeding IUCN Red List thresholds, and assess compensation potential across four locations. The regional population declined by 41.9% over three generations, with 91.4% probability of exceeding the 30% Vulnerable threshold but only 9.2% probability of exceeding the 50% Endangered threshold. Declines were spatially heterogeneous: South Shetland Islands (40.2% of regional population) declined by 74.7% with near-certainty of exceeding both thresholds, while South Orkney Islands showed stability with high uncertainty (median -5%, 95% CI: -31.5% to +36.8%). The probability of increasing colonies compensating for regional losses was only 7%. These results support a three-zone conservation strategy for CCAMLR's proposed Marine Protected Area: urgent protection for the South Shetland Islands, enhanced monitoring for South Orkney and Elephant Islands, and adaptive management for the Antarctic Peninsula. Our uncertainty-quantified framework provides evidence-based guidance for balancing krill fishery access with predator protection in a rapidly changing Southern Ocean.

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Guardians of our Rivers: transforming river health assessment through macroinvertebrate monitoring with citizen scientists

Lewis, R.; Dodd, K.; Macadam, C.; Matthews, I.; Pulver, S. R.

2026-08-27 ecology 10.64898/2026.08.26.739408 medRxiv
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Freshwater ecosystems in Scotland are increasingly threatened by multiple interacting stressors, including pollution, hydrological alteration, land use change, and climate-driven pressures. Scotland's rivers are amongst the most physically diverse and dynamic in the UK, contributing significantly to the country-s economy and natural heritage. Monitoring 125,000 km of waterways presents an issue, with limited funding and capacity of environmental agencies creating an environmental monitoring deficit at a time when robust data are essential for delivering national and global biodiversity targets. Citizen science offers a scalable, community driven approach to strengthening environmental evidence. This study evaluates the development, implementation, and outcomes of Guardians of our Rivers (GooR), a nationwide citizen science programme using macroinvertebrate-based river health assessments based on the Anglers' Riverfly Monitoring Initiative (RMI) established by the Riverfly Partnership. Between 2022 and 2025, GooR trained more than 850 volunteers, established 123 monitoring sites across Scotland, and generated over 860 surveys-surpassing the previous 16 years of aquatic invertebrate monitoring efforts. Standardised field training, full equipment provision, and structured support enabled high-quality data collection across diverse catchments. The establishment of nationally applied trigger and target thresholds created a consistent mechanism for detecting ecological deterioration and ensured that verified trigger breaches (n = 39 in 2025) resulted in formal investigation or follow-up. Analysis of national abundance patterns revealed ecological and biogeographic trends across the eight RMI taxa, confirming data sensitivity to habitat differences, water quality, and regional pressures. A detailed case study of the Lothian Esk catchment demonstrated the programme's capacity to detect seasonal macroinvertebrate dynamics and site level ecological trajectories over time. Overall, GooR illustrates how well-designed and well-supported citizen science can deliver high resolution spatiotemporal datasets, enhance early warning systems, empower communities, and make a meaningful contribution to promoting river health. Importantly, GooR forged a working partnership with Scottish Environmental Protection Agency (SEPA) that allowed communities to not only gather data but also transformed the way citizen science is recognized as contributing to freshwater conservation. Continued investment and long-term support will be essential to sustain these gains and realise the full potential of citizen-driven freshwater stewardship.

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Revision of the Community Conservation Index

Macadam, C. R.

2026-09-03 ecology 10.64898/2026.08.30.748128 medRxiv
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The Community Conservation Index (CCI) developed by Chadd and Extence (2004) has been widely used to assess the conservation value of freshwater macroinvertebrate assemblages by integrating species rarity and community richness into a single metric. However, the original conservation scoring system was based largely on historical rarity designations and regional distribution data that no longer reflect current conservation assessments or recording coverage. This paper presents a comprehensive revision of the Conservation Scores underpinning the CCI. Species scores were updated using the latest IUCN-compliant Red List assessments for British freshwater invertebrates. For taxa classified as Least Concern, Data Deficient, or lacking a recent conservation assessment, scores were derived from national occurrence data across Great Britain for the period 1995-2024 using hectad occupancy. In addition, all non-native species were assigned a conservation score of zero to ensure they do not contribute positively to site conservation value. The revised dataset includes 1,680 taxa, compared with 1,117 in the original index, with 755 taxa receiving Conservation Scores for the first time. Thirty non-native taxa were assigned a score of zero. Among previously scored taxa, 165 received higher scores, 576 received lower scores, and 184 remained unchanged. The predominance of score reductions reflects improved knowledge of species distributions and the replacement of historical rarity classifications with contemporary assessments based on conservation status and national frequency of taxon occupancy. The revised CCI maintains the original strengths of combining rarity and richness while improving transparency, consistency and ecological relevance. By incorporating current Red List assessments, Great Britain-wide distribution data and revised treatment of non-native species, the updated index provides a more robust and nationally representative measure of freshwater macroinvertebrate conservation value. It offers an enhanced tool for biodiversity assessment, conservation prioritisation, site designation and environmental decision-making across freshwater ecosystems in Great Britain.

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Southern (California) Sea Otter Population Status and Trends at San Nicolas Island, 2023-Winter 2026

Tomoleoni, J. A.; Yee, J. L.; Seacord, E.; Staedler, M. M.; Hatfield, B. B.; Carswell, L.; Fujii, J.; Bentall, G. B.; Konrad, L.; Young, C.; Tinker, M. T.; Bowen, L.

2026-08-31 ecology 10.64898/2026.08.28.747881 medRxiv
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The southern sea otter (Enhydra lutris nereis) population at San Nicolas Island, California, has been monitored annually since the translocation of 140 sea otters to the island was completed in 1990. Monitoring efforts have varied in frequency and method across years. In 2017, in accordance with the National Defense Authorization Act for Fiscal Year 2016, the U.S. Navy and the U.S. Fish and Wildlife Service formally initiated a sea otter monitoring and research plan to determine the effects of military readiness activities on the growth or decline of the southern sea otter population at San Nicolas Island. The monitoring program, at its basic level, includes quarterly seasonal surveys of population abundance, distribution, and foraging activity. This report presents data from the program with a focus on the recent three years from winter 2023 through winter (February) 2026. From 2023 to 2026, we measured an 8.1-percent per annum decrease in population abundance (95-percent confidence interval =1.1-14.6 percent), with 106 total individuals counted as of February 2026. Historically, sea otter habitat usage at San Nicolas Island was concentrated on the west end of the island. Between 2017 and 2019, we observed increased seasonal usage of the north and south sides of the island, and in 2020-2022, a large (approximately 30-40 individuals) group of sea otters (raft) took up residence off the east end. During 2023-2026 the east end raft disappeared, and sea otters returned to their historical habitat usage patterns at the west end of the island. Foraging data were collected from summer 2023 to winter 2026 on a total of 461 foraging dives in 32 foraging bouts, and the majority of identified prey on successful dives (n=325) were sea urchins (124) followed by snails (48), bivalves (41) and crabs (23). One lobster and one octopus were also identified among the sea otter prey items. We combined these data with data from 2020-2022 to estimate overall energy intake rates that averaged 7.7 kilocalories per minute (95-percent credible interval =6.6-9.1 kilocalories per minute). These results can be useful to the planning of future monitoring and research of sea otters at San Nicolas Island.

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A systematic map of soil invertebrate biodiversity in Canada: Identifying spatial and taxonomic knowledge gaps

Dharmasiri, M. E.; Lindo, Z.; Cameron, E. K.

2026-09-23 ecology 10.64898/2026.09.22.753449 medRxiv
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Soil is one of the most biodiverse habitats on the planet, yet the extent of soil biodiversity knowledge in Canada is unknown. To better understand our knowledge, we systematically mapped soil invertebrate biodiversity knowledge from peer-reviewed literature to identify spatial and taxonomic gaps and to assess whether areas projected to experience different magnitudes of climate change are adequately sampled. A total of 1,176 Canadian sampling locations were identified from 427 articles. We found biases in sampling coverage spatially and in relation to current and projected climatic conditions. The geographic region above 60 degrees North is sparsely sampled. Colder regions (< -0.12 C) and regions receiving the least (< 646.47 mm), moderately high (2268.67 to 2809.40 mm), and high (2809.40 to 3350.14 mm) amounts of precipitation were under sampled. Regions projected to have the smallest (< 0.86 C) and greatest (> 1.59 C) magnitudes in temperature change and regions projected to have moderate (-2.06 to +2.69 mm) to large changes (+2.69 to +7.44 mm) in precipitation were underrepresented. The sampled locations also suffer from taxonomic biases which were skewed toward Nematoda (19%), Annelida (18%), Acari (15%), and Collembola (14%). Our results suggest that methods such as stratified sampling is essential to capture underrepresented regions, taxonomic groups, and an array of current and projected climatic conditions. Additionally, shifting to a multispecies sampling approach is essential for broader soil ecosystem knowledge. Importantly, data from well-sampled areas should be examined to determine how it can be leveraged to advance conservation management of soil invertebrates.

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Functional Diversity of Reef Fishes in the Veracruz Reef System National Park, SW Gulf of Mexico

Arias-Gonzalez, J. E.; Morales-Aranda, A. A.; Morales-de-Anda, D.; Horta-Puga, G.

2026-10-06 ecology 10.64898/2026.10.02.756167 medRxiv
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Reef fish assemblages in the Veracruz Reef System National Park (VRSNP) are strongly structured along a pronounced north-south gradient, where environmental conditions, urban proximity, and protection levels interact to shape functional diversity and ecosystem functioning. This gradient creates contrasting ecological conditions between northern and southern reefs, providing a natural framework for evaluating how spatial variation influences resilience. Using a stationary visual census across ten reefs distributed latitudinally, we quantified functional entities based on six ecological traits and calculated functional richness, redundancy, over-redundancy, vulnerability, specialization, and originality. A two-way permutational ANOVA and redundancy analysis were used to detect spatial and temporal patterns and to link functional indices with environmental features. The southern sector displayed the most intense functional shifts. Nearshore southern reefs, strongly exposed to sedimentation, nutrient loading, and physical disturbance, exhibited reduced functional richness, fewer functional entities, and high functional vulnerability, indicating strong environmental filtering. Over time, these reefs shifted toward generalist-dominated assemblages with rising redundancy, suggesting functional convergence. In contrast, southern offshore reefs supported higher taxonomic and functional richness, buffered by greater habitat complexity and distance from shore, although they showed declining redundancy, likely reflecting sensitivity to regional climatic disturbances. In the northern sector, the gradient was moderated by effective protection, which reshaped functional configurations. Nearshore protected reefs such as Isla Sacrificios and Isla de Enmedio maintained high redundancy, low vulnerability, and high biomass of large-bodied fishes, resembling offshore systems rather than disturbed southern nearshore reefs. The northern offshore reef (Isla Verde) shared some of these attributes but exhibited temporal declines in richness, signaling emerging vulnerabilities along the gradient. Functional originality and specialization aligned with benthic states across the gradient, particularly where macroalgal or calcareous substrates prevailed. Overall, the north-south gradient is the primary axis of functional organization in VRSNP, revealing that resilience emerges from the interplay among reef geomorphology, urban influence, and governance effectiveness.

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Life inside polymetallic nodules

Diaz-Recio Lorenzo, C.; Stratmann, T.; de Wilt, M. E.; Radhakrishnan, R.; Macheriotou, L.; Pape, E.; Hoogerdijk, L.; van den Hooven-Iza, N. J.; Krueger, J. T.; Kaspersmeier, L.; Neuser, M.; Kloeckner, M.; Lauth, M.; Schaper, M.; Patel, T.; Gollner, S.

2026-08-04 ecology 10.64898/2026.08.02.742282 medRxiv
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Deep-sea abyssal plains harbour extensive biodiversity, much of which remains undocumented. Polymetallic nodules in the abyssal plains of the Clarion-Clipperton Zone (CCZ), Central Pacific, harbour diverse meiofaunal communities within their crevices, representing an understudied habitat. Given their high concentrations of nickel, copper, and cobalt, nodules are currently one of the primary targets for the extraction of deep-sea mineral resources. Here, we characterise the physical properties of polymetallic nodules, quantify their meiofaunal crevice communities, and compare them to those from the nearby sediments. We show that nodules contain internal cracks and microfossils, that their crevices harbour meiofaunal communities dominated by nematodes and copepods, and that faunal abundance increases significantly with nodule volume. Nodule-crevice nematode and copepod abundances were equivalent to approximately 10% and 25%, respectively, of those recorded in nearby sediments across the two exploration contract areas in the eastern CCZ. Based on 18S rRNA data, nematode and copepod assemblages recovered from nodule crevices differed from those recovered from nearby sediments collected during the same expedition and within the same exploration contract areas. Our findings, therefore, point to the possibility of nodule-associated crevice meiofauna communities and the consequent risk of biodiversity loss associated with nodule removal through potential future commercial mining.

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Limitation of External Nutrient Supply Effects by Iron-Driven Internal Phosphorus Cycling in Semi-Enclosed Coastal Waters: A Case Study of Mikawa Bay

Ippei, N.; Naruse, K.

2026-09-24 ecology 10.64898/2026.09.23.753643 medRxiv
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The decline in fishery yields in Japan's enclosed coastal seas has been accompanied by a reduction in phytoplankton biomass, suggesting a widespread decrease in ecosystem productivity. Oligotrophication in Mikawa Bay has caused substantial declines in phytoplankton biomass and Manila clam (Ruditapes philippinarum) production. To assess whether external nutrient enhancement could stimulate phytoplankton growth, a controlled demonstration experiment using treated effluent from two sewage treatment plants (WWTPs) was conducted (spanning fiscal years 2022 to 2024) based on analysis using a three-dimensional non-hydrostatic model. Although effluent DIP and nitrogen concentrations were increased, model results showed that WWTP-derived nutrients represent only a minor portion of the total nutrient budget. Field observations revealed limited increases in surface water phosphorus, strong seasonal variability, and only temporary rises in chlorophyll-a and clam harvests. Monthly TP data demonstrated that seasonal DIP pulses, especially spring phosphorus bursts, dominate nutrient dynamics and overshadow external loading effects. Laboratory experiments further showed that phosphate is efficiently fixed by Fe(III) under oxidizing conditions and rapidly released during reductive dissolution of [FeOOH-HPO4]2- complexes, confirming iron as the principal regulator of internal P cycling. Because current numerical models omit iron-driven internal cycling, they cannot accurately predict bioavailable P or ecosystem responses. Overall, the study indicates that localized nutrient enhancement is insufficient to counter long-term oligotrophication, and effective management must integrate nitrogen limitation, internal Fe and P cycling, oceanic exchange, and seasonal variability in Ise and Mikawa Bays.

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Land-use influence on benthic algal assemblage structure and biomass in Afrotropical headwater streams

Rioba, S. N.; Iteba, J. O.; Kuluo, G. L.; Jacobs, S. R.; Breuer, L.; Masese, F. O.

2026-07-24 ecology 10.64898/2026.07.24.740510 medRxiv
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Benthic algae integrate catchment-and reach-scale pressures in streams. We assessed land-use effects on benthic algal assemblage structure, chlorophyll-a, ash-free dry mass (AFDM), and autotrophic index across 24 headwater streams in the Sondu-Miriu River basin, Kenya, and explored wet-dry patterns in two monitoring streams. We sampled across four land-use categories: natural forest (NF), tea and tree plantations (TTP), smallholder agriculture (SHA), and smallholder tea (SHT). Synoptic sampling occurred in August 2025, and one NF stream and one SHA stream were sampled five times between November 2024 and May 2025. Shannon and Simpson diversity were highest in NF streams and lowest in SHT streams. Chlorophyll-a and AFDM were highest in SHA streams; chlorophyll-a was lowest in SHT, while AFDM and autotrophic index were lowest in NF. Relative abundance patterns showed that SHA streams were dominated by Lyngbya and Stigeoclonium, whereas SHT streams were dominated mainly by Stigeoclonium; NF streams supported persistent diatom-rich assemblages. Non-metric multidimensional scaling showed land-use separation of benthic algal assemblages, while redundancy analysis indicated weak, non-significant evidence of environmental associations in the synoptic dataset. Composition and biomass metrics tracked land-use gradients and wet-dry patterns, supporting periphyton-based bioassessment for monitoring disturbance in Afrotropical headwater streams.

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Investigating biotic, chemical, and physical drivers of periphyton and invertebrate biomass in boreal streams supporting juvenile Atlantic salmon

Ranta, M.; Leroux, S.; Adams, H.; Foote, K.; van Miltenburg, N.; Murphy, N.; Hart, A.; Purchase, C.

2026-09-18 ecology 10.64898/2026.09.16.752060 medRxiv
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3.2%
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1. Atlantic salmon (Salmo salar) are an anadromous fish with a broad distribution from eastern North America to western Europe, with ecological, economic, and cultural significance. Despite their expansive range, wild populations across the North Atlantic have experienced decline. Survival to reproductive age is a management concern, with a focus on identifying factors affecting the juvenile freshwater life stage. Specifically, research is needed to identify potential bottlenecks limiting freshwater productivity. 2. We addressed this research gap with a case study on the Exploits River, Newfoundland - a watershed that receives one of the largest anadromous Atlantic salmon returns in North America. We aimed to identify biotic, chemical, and physical predictors of food resources for juvenile salmon (i.e., invertebrates) and food resources for invertebrates (i.e., periphyton). To test our hypotheses, we collected data on a suite of biotic (e.g., invertebrates and periphyton), chemical (e.g., total dissolved N), and physical (e.g., wetted width) variables at 42 sites within and around this watershed. 3. We observed evidence for relationships between invertebrate biomass and biotic and temporal variables. Specifically, invertebrate biomass was higher at sites with high periphyton biomass that were sampled later in the season. In addition, we observed that periphyton biomass was related to biotic, chemical, and physical variables. Here, we present evidence for bottom-up control, with increased periphyton biomass supporting increased invertebrate biomass. 4. We expect knock-on effects where increased invertebrate biomass results in increased juvenile Atlantic salmon biomass. Our large sample size revealed some predictors of invertebrate biomass and periphyton biomass. However, we found no evidence of correlation between invertebrate biomass and chemical or physical variables. The low productivity of our maritime boreal forest system could be an outlier in expected biotic, chemical, and physical relationships in streams. 5. Our findings provide an important step forward in furthering boreal stream ecology, producing novel invertebrate and periphyton knowledge for watershed managers.

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Finding dugongs through environmental DNA: a complementary tool for population surveillance

Aul, L.; Clegue, C.; Burrows, D.; Martin, J. L.; Mathews, D.; Widdicombe, S.; Stahl, H.; Strugnell, J.; Havermans, C.; Villacorta-Rath, C.

2026-10-01 genetics 10.64898/2026.09.30.755531 medRxiv
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Detecting dugongs at low densities remains a major challenge for conservation monitoring, particularly in remote or turbid coastal habitats where conventional surveys are difficult. Environmental DNA (eDNA) offers a complementary approach, but robust species-specific tools are needed before it can be confidently applied to dugong surveillance. We developed and analytically validated a quantitative PCR TaqMan assay for detecting dugong (Dugong dugon) eDNA and evaluated its performance across controlled aquarium conditions in Australia and Abu Dhabi, and wild populations in northern Australia and the Arabian/Persian Gulf. The assay detected dugong eDNA in aquarium and field samples, with Sanger sequencing confirming amplification of dugong mitochondrial DNA from positive field detections. Our assay provides a robust and geographically transferable tool for targeted dugong eDNA detection, performing reliably across contrasting coastal environments and widely separated populations. This approach can strengthen local-scale surveillance of low-density or difficult-to-detect dugong populations.

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Beyond Single-Metric Assessments: Uncovering Masked Butterfly Declines via Multi-Scalar Analysis in Central Alberta

Lewis, D.; Lifshitz, N.

2026-09-03 ecology 10.64898/2026.08.27.747689 medRxiv
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1. This study analyzed 21 years (2000-2025) of butterfly count data from Central Alberta, integrated with intensive 5-year (2021-2025) high-resolution intra-seasonal sampling. 2. Long-term macro-scale analysis revealed a significant decline in Shannon Diversity, a change that remained obscured when relying solely on traditional metrics of species richness and evenness. 3. This diversity decline was primarily driven by the severe, long-term collapse of the native Common Ringlet (Coenonympha tullia). 4. Four other dominant species--Cabbage White (Pieris rapae), Clouded Sulphur (Colias eriphyle), European Skipper (Thymelicus lineola), and Common Wood Nymph (Cercyonis pegala)--maintained long-term population stability, though their abundances were significantly constrained by extreme winter minimum temperatures and rapid spring warming. 5. High-resolution intra-seasonal analysis (2021-2025) demonstrated that community indices and species-specific abundances were strongly limited by daily weather, particularly wind velocity and temperature. 6. These findings illustrate that while traditional metrics like richness and evenness are fundamental to community ecology, they provide incomplete insights when applied in isolation; they are most effective when utilized as part of a complementary, multi-scalar framework. 7. This study highlights the necessity of coupling multi-decadal historical datasets with high-frequency, fine-scale sampling to accurately identify the mechanisms of community turnover that simpler metrics may overlook. 8. The results underscore the critical importance of standardized citizen science monitoring in quantifying environmental impacts and establishing conservation priorities for terrestrial insect groups.