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Theranostics

Ivyspring International Publisher

Preprints posted in the last 7 days, ranked by how well they match Theranostics's content profile, based on 33 papers previously published here. The average preprint has a 0.05% match score for this journal, so anything above that is already an above-average fit.

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Distinct Metabolic Signatures Distinguish Lung, Colorectal and Ovarian Cancer

Tsiara, I.; Vouzaxaki, E.; Ekström, J.; Rameika, N.; Yang, F.; Jain, A.; Iglesias Alonso, A.; Sjöblom, T.; Globisch, D.

2026-04-13 oncology 10.64898/2026.04.08.26350309 medRxiv
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Cancer-related casualties are the most common cause of death worldwide. The discovery of biomarkers is of utmost importance for diagnosis and disease monitoring. Herein, we performed a comprehensive metabolomics biomarker discovery effort in plasma from 615 lung, ovarian and colorectal cancer patients at diagnosis and 95 non-cancerous control subjects. This pan-cancer investigation identified specific panels of metabolites in the entire sample cohort with a high discriminating power and demonstrated by combined ROC AUC values of up to 0.95. The identified metabolites are mainly associated with lipid and amino acid metabolism as well as xenobiotic transformation. These metabolite panels of high predictive power provide new metabolic insights in these cancers and demonstrate the potential of metabolomics for improved diagnosis and monitoring disease progression.

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Imaging Mass Cytometry (IMC) as a Tool to Characterize Circulating Tumor Cells (CTCs) in Preclinical Mouse Models

Pore, M.; Balamurugan, K.; Atkinson, A.; Breen, D.; Mallory, P.; Cardamone, A.; McKennett, L.; Newkirk, C.; Sharan, S.; Bocik, W.; Sterneck, E.

2026-04-16 cancer biology 10.64898/2025.12.18.695262 medRxiv
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Circulating tumor cells (CTCs), and especially CTC-clusters, are linked to poor prognosis and may reveal mechanisms of metastasis and treatment resistance. Therefore, developing unbiased methods for the functional characterization of CTCs in liquid biopsies is an urgent need. Here, we present an evaluation of multiplex imaging mass cytometry (IMC) to analyze CTCs in mice with human xenograft tumors. In a single-step process, IMC uses metal-labeled antibodies to simultaneously detect a large number of proteins/modifications within minimally manipulated small volumes of blood from the tail vein or heart. We used breast cancer cell lines and a patient-derived xenograft (PDX) to assess antibodies for cross-species interpretation. Along with manual verification, HALO-AI-based cell segmentation was used to identify CTCs and quantify markers. Despite some limitations regarding human-specificity, this technology can be used to investigate the effect of genetic and pharmacological interventions on the properties of single and cluster CTCs in tumor-bearing mice.

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GPR143, a novel immunohistochemical marker for renal tumors with FLCN/TSC/MTOR-TFE alterations

Li, Q.; Singh, A.; Hu, R.; Huang, W.; Shapiro, D. D.; Abel, E. J.; Zong, Y.

2026-04-13 pathology 10.64898/2026.04.06.26350070 medRxiv
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Although several ancillary tests are available in limited laboratories, diagnosis of microphthalmia (MiT)/TFE family translocation renal cell carcinoma (tRCC) could be challenging due to diverse and overlapping tumor morphology and the lack of reliable biomarkers. GPNMB has been recently identified as a diagnostic marker for various renal neoplasms with FLCN/TSC/mTOR-TFE alterations. However, the sensitivity and specificity of GPNMB immunostain are suboptimal and the result interpretation in ambiguous cases could be difficult. To search additional biomarkers that could improve the screening sensitivity and predict genetic aberrations in FLCN/TSC/mTOR-TFE pathway in renal tumors, we performed bioinformatic analysis of publicly available cancer databases and found GPR143, a transmembrane protein regulated by MiT transcription factors, was highly expressed in a subset of renal cell carcinomas (RCCs). In two the Cancer Genome Atlas (TCGA) kidney cancer cohorts, RCCs with high levels of GPR143 expression were enriched for renal neoplasms with FLCN/TSC/mTOR-TFE alterations. Similar to GPNMB labeling, GPR143 immunostain was positive in the majority of tRCC cases and renal tumors with FLCN/TSC/mTOR alterations, suggesting that GPR143 could function as another surrogate marker for FLCN/TSC/mTOR-TFE alterations in certain renal tumors. Interestingly, despite the concordant GPR143 and GPNMB immunoreactivity in most renal neoplasms with FLCN/TSC/mTOR-TFE alterations, diffuse GPR143 immunostain was observed in some cases with negative or focal GPNMB labeling. Taken together, our results indicate GPR143 could serve as a useful adjunct marker to improve the sensitivity for screening renal tumors with FLCN/TSC/mTOR-TFE alterations.

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Virtual Spectral Decomposition with Dendritic Binary Gating Detects Pancreatic Cancer Tissue Transformation on Standard CT: Multi-Institutional Validation Across Three Independent Datasets with a 3.8-Year Pre-Diagnostic Detection Window

Chandra, S.

2026-04-12 oncology 10.64898/2026.04.08.26350418 medRxiv
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Background. Pancreatic ductal adenocarcinoma (PDAC) has a five-year survival rate of approximately 12%, largely because it is typically diagnosed at an advanced stage. CT-based computational methods for early detection exist but rely on black-box deep learning or large texture feature sets without tissue-specific interpretability. Methods. We developed Virtual Spectral Decomposition (VSD), which applies six parameterized sigmoid functions S(HU) = 1/(1+exp(-alpha x (HU - mu))) to standard portal-venous CT, decomposing each pixel into tissue-specific response channels for fat (mu=-60), fluid (mu=10), parenchyma (mu=45), stroma (mu=75), vascular (mu=130), and calcification (mu=250). Dendritic Binary Gating identifies structural content per channel using morphological filtering, enabling co-firing analysis and lone firer identification. A 25-feature signature was extracted per patient. Three independent datasets were analyzed: NIH Pancreas-CT (n=78 healthy), Medical Segmentation Decathlon Task07 (n=281 PDAC, paired tumor/adjacent tissue), and CPTAC-PDA from The Cancer Imaging Archive (n=82, multi-institutional, with DICOM time point tags). The same six sigmoid parameters were used across all datasets without retraining. Results. VSD achieved AUC 0.943 for field effect detection (healthy vs cancer-adjacent parenchyma) and AUC 0.931 for patient-stratified tumor specification on MSD. On CPTAC-PDA, VSD achieved AUC 0.961 (6 features) and 0.979 (25 features) for distinguishing healthy from cancer-bearing pancreas on scans obtained prior to pathological diagnosis. All significant features replicated across datasets in the same direction: z_fat (d=-2.10, p=3.5e-27), z_fluid (d=-2.76, p=2.4e-38), fire_fat (d=+2.18, p=1.2e-28). Critically, VSD severity did not correlate with days-from-diagnosis (r=-0.008, p=0.944) across a range of day -1394 to day +249. Patient C3N-01375, scanned 3.8 years before pathological diagnosis, had VSD severity 1.87, well above the healthy mean of 0.94 +/- 0.33. The tissue transformation signature was temporally stable, indicating an early, persistent tissue state rather than a progressively worsening process. Conclusions. VSD with Dendritic Binary Gating detects a stable pancreatic tissue composition signature on standard CT that is present years before clinical diagnosis, validated across three independent datasets without parameter adjustment. The six sigmoid channels map to biologically meaningful tissue components through a fully transparent interpretability chain. The temporal stability of the signal implies a detection window of 3-7 years, consistent with known PanIN-3 microenvironment transformation timelines. VSD functions as a single-scan screening tool applicable to any abdominal CT performed during the pre-clinical window.

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Virtual Spectral Decomposition with Dendritic Tile Selection: An Explainable AI Framework for Multimodal Tissue Composition Analysis and Immune Phenotyping Across Pancreatic, Lung, and Breast Cancer

Chandra, S.

2026-04-13 oncology 10.64898/2026.04.11.26350689 medRxiv
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Background: Current deep learning models in computational pathology, radiology, and digital pathology produce opaque predictions that lack the explainable artificial intelligence (xAI) capabilities required for clinical adoption. Despite achieving radiologist-level performance in tasks from whole-slide image (WSI) classification to mammographic screening, these models function as black boxes: clinicians cannot trace predictions to specific biological features, verify outputs against established morphological criteria, or integrate AI reasoning into precision oncology workflows and tumor board decision-making. Methods: We present Virtual Spectral Decomposition (VSD), a modality-agnostic, interpretable-by-design framework that decomposes medical images into six biologically interpretable tissue composition channels using sigmoid threshold functions - the same mathematical structure as CT windowing. Unlike post-hoc xAI methods (Grad-CAM, SHAP, LIME) applied to black-box deep learning models, VSD channels have pre-defined biological meanings derived from tissue physics, providing inherent explainability without sacrificing quantitative rigor. For whole-slide image (WSI) analysis in digital pathology, we introduce the dendritic tile selection algorithm, a biologically-inspired hierarchical architecture achieving 70-80% computational reduction while preferentially sampling the tumor immune microenvironment. VSD is validated across three cancer types and imaging modalities: pancreatic ductal adenocarcinoma (PDAC) on CT imaging, lung adenocarcinoma (LUAD) on H&E-stained pathology slides using TCGA data, and breast cancer on screening mammography. Composition entropy of the six-channel vector is computed as a visual Biological Entropy Index (vBEI) - an imaging biomarker quantifying the diversity of active biological defense systems. Results: In pancreatic cancer, the fat-to-stroma ratio (a novel CT-derived radiomics biomarker) declines from >5.0 (normal) to <0.5 (advanced PDAC), enabling early detection of desmoplastic invasion before mass formation on standard imaging. In lung cancer, composition entropy from H&E whole-slide images correlates with tumor immune microenvironment markers from RNA-seq (CD3: rho=+0.57, p=0.009; CD8: rho=+0.54, p=0.015; PD-1: rho=+0.54, p=0.013) and predicts overall survival (low entropy immune-desert phenotype: 71% mortality vs 29%, p=0.032; n=20 TCGA-LUAD), providing immune phenotyping for checkpoint immunotherapy patient selection from a $5 H&E slide without molecular assays. In breast cancer, each lesion type produces a characteristic six-channel fingerprint functioning as an interpretable computer-aided diagnosis (CAD) system for quantitative BI-RADS assessment and subtype classification (IDC vs ILC vs DCIS vs IBC). A five-level xAI audit trail provides complete traceability from clinical decision support output to specific biological structures visible on the original images. Conclusion: VSD establishes a unified, interpretable-by-design mathematical framework for explainable tissue composition analysis across imaging modalities and cancer types. Unlike black-box deep learning and post-hoc xAI approaches, VSD provides inherently interpretable, clinically verifiable cancer detection and immune phenotyping from standard clinical imaging at existing costs - without requiring foundation model infrastructure, specialized hardware, or molecular assays. The open-source pipeline (Google Colab, Supplementary Material) enables immediate reproducibility and extension to additional cancer types across the pan-cancer TCGA atlas.

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Hidden risk in normal myocardial perfusion scans: AI-detected proximal coronary calcium on CT attenuation maps improves prognosis

Zhou, J.; Miller, R. J.; Shanbhag, A.; Killekar, A.; Han, D.; Patel, K. K.; Pieszko, K.; Yi, J.; Urs, M. K.; Ramirez, G.; Lemley, M.; Kavanagh, P. B.; Liang, J. X.; Kamagate, A.; Builoff, V.; Einstein, A. J.; Feher, A.; Miller, E. J.; Sinusas, A. J.; Ruddy, T. D.; Knight, S.; Le, V. T.; Mason, S.; Chareonthaitawee, P.; Wopperer, S.; Alexanderson, E.; Carvajal-Juarez, I.; Rosamond, T. L.; Slipczuk, L.; Travin, M. I.; Packard, R. R.; Acampa, W.; Al-Mallah, M.; deKemp, R. A.; Buechel, R. R.; Berman, D. S.; Dey, D.; Di Carli, M. F.; Slomka, P. J.

2026-04-15 cardiovascular medicine 10.64898/2026.04.14.26350808 medRxiv
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Purpose: Spatial distribution of coronary artery calcium (CAC) may provide additional prognostic value in patients undergoing SPECT and PET myocardial perfusion imaging (MPI). We aimed to automatically identify CAC in proximal segments from attenuation correction CT (CTAC) scans using artificial intelligence (AI) and to evaluate prognostic significance in two large international multicenter registries. Methods: From hybrid MPI/CT imaging (N=43,099) across 15 sites, we included 4,552 most relevant patients with 1) no prior coronary artery disease; 2) AI-derived mild CAC scores (1-99); and 3) normal perfusion (stress total perfusion deficit <5%). The independent associations between AI-identified proximal CAC and major adverse cardiovascular events (MACE) and all-cause mortality (ACM) were evaluated using multivariable Cox regression, likelihood ratio test (LRT), and continuous net reclassification index (NRI). Results: Among the patients with mild CAC and normal perfusion (mean age 65{+/-}12 years, 51% male), 1,730 (38%) had proximal CAC. Over 3.6 (inter-quartile interval 2.1, 5.2) years follow up, 599 (13%) and 444 (10%) patients had MACE or ACM, respectively. Proximal CAC was associated with an increased risk of MACE (adjusted hazard ratio [HR] 1.24, 95% CI 1.03-1.48, P=0.02) and ACM (adjusted HR 1.25, 95% CI 1.01-1.53, P=0.04) after the adjustment of CAC score and density, clinical risk factors, and perfusion deficit. Proximal CAC improved the risk stratification of MACE (LRT P=0.02; NRI 12%) and ACM (LRT P=0.04; NRI 12%). Conclusion: In patients with mild CAC and normal perfusion, AI detection of proximal CAC identified a higher-risk group for adverse outcomes, highlighting its prognostic utility.

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Molecular signature of pediatric B-ALL determines outcomes post CD19 CAR-T cell therapy

Oszer, A.; Pastorczak, A.; Urbanska, Z.; Miarka, K.; Marschollek, P.; Richert-Przygonska, M.; Mielcarek-Siedziuk, M.; Baggott, C.; Schultz, L.; Moon, J.; Aftandilian, C.; Styczynski, J.; Kalwak, K.; Mlynarski, W.; Davis, K. L.

2026-04-13 oncology 10.64898/2026.04.11.26350681 medRxiv
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Chimeric antigen receptor T-cell (CAR-T) therapy targeting CD19 has transformed outcomes for children with relapsed or refractory (R/R) B-cell acute lymphoblastic leukemia (B-ALL), yet the influence of molecular subtype on outcomes remains unclear. We evaluated the impact of cytogenetic and molecular signatures on complete response (CR), overall survival (OS), and leukemia-free survival (LFS) after CD19 CAR-T therapy in eighty-six pediatric patients with R/R B-ALL treated with tisagenlecleucel. CR was assessed 30 days after infusion. Cytogenetic data were available for 84 patients and molecular profiling for 62. Survival analyses included 72 patients who received CD19 CAR-T as the sole cellular therapy. Seventy-seven patients achieved CR (89.5%). Pre-infusion bone marrow blasts of [&ge;]20% were associated with lower CR rates (53.8% vs 95.9%, p<0.0001) and significantly reduced OS and LFS (both p<0.0001). Among molecular markers, RAS mutations correlated with inferior OS (p=0.0222) and LFS (0.0402). In multivariate analysis, bone marrow blasts >20% and RAS mutations independently predicted inferior OS. Post CAR-T, CD19 negative relapses showed almost twice higher prevalence of RAS mutations (66% vs 37.5%). These findings highlight RAS mutations as a key molecular predictor of outcome after CD19 CAR-T therapy and suggest emergence of unique risk stratification for patients receiving CD19-targeting therapy.

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OCA-B/Pou2af1 Expression in T Cells Promotes PD-1 Blockade-Induced Autoimmunity but is Dispensable for Anti-Tumor Immunity

Du, J.; Manna, A. K.; Medina-Serpas, M. A.; Hughes, E. P.; Bisoma, P.; Evason, K. J.; Young, A.; Wilson, W. D.; Brusko, T.; Farahat, A. A.; Tantin, D.

2026-04-16 immunology 10.1101/2025.10.22.683978 medRxiv
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The transcription coregulator OCA-B promotes CD4+ T cell memory recall responses and autoimmunity. OCA-B T cell deletion prevents spontaneous type-1 diabetes (T1D) onset in non-obese diabetic (NOD) mice and blunts T1D in a subset of more aggressive models. However, the role of OCA-B in diabetes induced by treatment with immune checkpoint inhibitors (ICIs), and the role of OCA-B in the control of tumors with and without ICI treatment, has not been studied. Here we show that islet and pancreatic lymph node T cells from T1D individuals express measurable POU2AF1 mRNA. Deletion of OCA-B in T cells fully insulates 8-week-old non-obese diabetic (NOD) mice against ICI-induced diabetes and partially protects 12-week-old mice. Salivary and lacrimal gland infiltration and inflammation were also reduced. Protection was associated with a block in the differentiation of progenitor exhausted CD8+ T cells (TPEX) into terminally exhausted CD8+ T cells (TEX). We show that OCA-B T cell loss preserves anti-tumor immune responses following PD-1 blockade in different tumors and mouse strains. These findings point to a potential therapeutic window in which pharmaceuticals targeting OCA-B could be used to block the emergence of both spontaneous and ICI-induced autoimmunity while sparing anti-tumor immunity. We develop first-in-class small molecule inhibitors of Oct1/OCA-B transcription complexes and show that administration into NOD mice also blocks diabetes emergence following PD-1 blockade. These results identify OCA-B as a promising therapeutic target for the prevention of autoimmunity and immune-related adverse events (irAEs).

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Validation of Immunoscore for Prognostic Stratification in HPV-associated Oropharyngeal Cancer: An International Multicenter Study

Nguyen, D. H.; Majdi, A.; Marliot, F.; Houtart, V.; Kirilovsky, A.; Hijazi, A.; Fredriksen, T.; de Sousa Carvalho, N.; Bach, A.- S.; Gaultier, A.- L.; Fabiano, E.; Kreps, S.; Tartour, E.; Pere, H.; Veyer, D.; Blanchard, P.; Angell, H. K.; Pages, F.; Mirghani, H.; Galon, J.

2026-04-11 oncology 10.64898/2026.04.08.26350238 medRxiv
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BackgroundTreatment optimization in HPV-associated oropharyngeal cancer (OPSCC) remains challenging, as recent de-escalation trials have shown limited success. Current patient selection strategies based on smoking history and TNM classification are insufficient, highlighting the need for robust, standardized prognostic biomarkers. We report the first validation of the Immunoscore (IS) for prognostic stratification in HPV-associated OPSCC. Patients and methodsWe analyzed 191 HPV-associated (p16+ and HPV DNA/RNA+) OPSCC patients from an international multicenter cohort (2015-2024), comprising a French monocentric retrospective training cohort (N = 48) and three validation cohorts: French monocentric retrospective (N = 48), French multicenter prospective (N = 50), and US multicenter retrospective (N = 45). IS is a standardized digital pathology assay quantifying CD3lJ and CD8lJ densities in tumor cores and invasive margins, with cut-offs defined in the training cohort and validated across cohorts. Associations with disease-free survival (DFS), time to recurrence (TTR) and overall survival (OS) were assessed, alongside 3RNA-seq and sequential immunofluorescence profiling of immune composition. ResultsMedian age 65; 80% male; 74% smokers; 66% T1-2; 82% N0-1 (AJCC8th). IS-High patients demonstrated superior 3-year DFS in the training and validation cohorts 1-3 (all log-rank P < 0.05). Multivariable analysis identified IS-Low as the strongest independent risk factor for DFS (HR 9.03; 95% CI: 4.02-20.31; P < 0.001). The model combining IS with clinical factors showed higher predictive accuracy for DFS (C-index 0.82) than clinical variables alone (0.7; P < 0.0001). Similar findings were observed for TTR and OS. IS-High tumors showed markedly higher enrichment of lymphoid and myeloid immune cell populations, contrasting with immune-poor signatures in IS-Low tumors. ConclusionsIS is a robust biomarker that outperforms standard clinical variables in both prognostic and predictive accuracy. The enriched cytotoxic immune infiltrate in IS-High tumors explains favorable outcomes and supports their suitability for treatment de-escalation. Prospective validation is warranted.

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The impact of non-invasive prehabilitation before surgery on emotional well-being in neuro-oncology patients: Insights from the Prehabilita project

Brault-Boixader, N.; Roca-Ventura, A.; Delgado-Gallen, S.; Buloz-Osorio, E.; Perellon-Alfonso, R.; Hung Au, C.; Bartres-Faz, D.; Pascual-Leone, A.; Tormos Munoz, J. M.; Abellaneda-Perez, K.; Prehabilita Working Group,

2026-04-12 oncology 10.64898/2026.04.08.26350382 medRxiv
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Prehabilitation (PRH) is a preoperative process aimed at optimizing patients functional capacity to improve surgical outcomes and overall well-being. While its physical and cognitive benefits are increasingly documented, its emotional impact, particularly in neuro-oncology patients, remains less explored. This study assessed the psychological effects of a PRH program on 29 brain tumor patients. The primary outcome, emotional well-being, was measured using quality of life and emotional distress metrices. Secondary outcomes included perceived stress levels and control attitudes. Additionally, qualitative data from structured interviews provided further insights into the psychological effects of the intervention. The results indicated significant improvements in quality of life and reductions in emotional distress, particularly among women. While perceived stress levels remained stable, control attitudes showed an increase. Qualitative analysis further highlighted the positive changes in the control sense and identified additional factors, such as the importance of social support sources during the PRH process. Overall, these findings suggest that PRH interventions play a significant role in enhancing emotional well-being among neuro-oncological patients in the preoperative phase. These results underscore the importance of implementing comprehensive and personalized PRH approaches to optimize clinical status both before and after surgery, thereby promoting sustained psychological benefits in this population. This study is based on data collected at Institut Guttmann in Barcelona in the context of the Prehabilita project (ClinicalTrials.gov identifier: NCT05844605; registration date: 06/05/2023).

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SCOPE: Integrating Organoid Screening and Clinical Variables Through Machine Learning for Cancer Trial Outcome Prediction

Bouteiller, J.; Gryspeert, A.-R.; Caron, J.; Polit, L.; Altay, G.; Cabantous, M.; Pietrzak, R.; Graziosi, F.; Longarini, M.; Schutte, K.; Cartry, J.; Mathieu, J. R.; Bedja, S.; Boileve, A.; Ducreux, M.; Pages, D.-L.; Jaulin, F.; Ronteix, G.

2026-04-11 oncology 10.64898/2026.04.10.26350512 medRxiv
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Background: Predicting whether a treatment will demonstrate meaningful clinical benefit before committing to a large-scale trial remains a major unmet need in oncology. Patient-derived organoids (PDOs) recapitulate individual tumor drug sensitivity, but have not been used to forecast population-level trial outcomes. We developed SCOPE (Screening-to-Clinical Outcome Prediction Engine), a platform that integrates PDO drug screening with clinical prognostic modeling to predict arm-level median progression-free survival (mPFS) and objective response rate (ORR) without access to any trial outcome data. Patients and methods: SCOPE was trained on 54 treatment lines from patients with metastatic colorectal cancer (mCRC, n=15) and metastatic pancreatic ductal adenocarcinoma (mPDAC, n=39) with matched clinical data and PDO drug screening across 9 compounds. A Clinical Score module captures baseline prognosis; a Drug Screen Score module quantifies treatment-specific organoid sensitivity. To predict trial outcomes, synthetic patient profiles are generated from published eligibility criteria and matched to a biobank of 81 PDO lines. Predictions were externally validated against 32 arms from 23 published trials, treatment ranking was assessed across 8 head-to-head comparisons, and prospective applicability was tested for daraxonrasib (RMC-6236), a novel pan-RAS inhibitor in mPDAC. Results: Predicted mPFS strongly agreed with published outcomes (R2=0.85, MAE=0.82 months; Pearson r=0.92, P<0.001), approaching the empirical concordance between two independently measured clinical endpoints (ORR vs. mPFS, R2=0.87). ORR prediction was similarly robust (R2=0.71, MAE=7.3 percentage points). Integrating organoid and clinical data significantly outperformed either alone (P=0.001). SCOPE correctly identified the superior arm in 7 of 8 head-to-head comparisons (88%, P<0.05). Applied to daraxonrasib prior to phase 3 data availability, the platform predicted superiority over standard chemotherapy in KRAS-mutant mPDAC, consistent with emerging clinical data. Conclusion: By combining functional organoid drug screening with clinical modeling, SCOPE generates calibrated efficacy predictions for both established regimens and novel agents without prior clinical data. This approach could support clinical trial design, treatment arm selection, and go/no-go decisions, offering a new tool to improve the efficiency of gastrointestinal cancer drug development.

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Drug response profiling guides precision therapy in relapsed and refractory childhood acute lymphoblastic leukemia

Steffen, F. D.; Lissat, A.; Alten, J.; Kriston, A.; Scheidegger, N.; Eckert, C.; Bodmer, N.; Schori, L.; Schühle, S.; Arpagaus, A.; Gutnik, S.; Manioti, D.; Bruderer, N.; Zeckanovic, A.; Västrik, I.; Nyiri, G.; Kovacs, F.; Thorhauge Als-Nielsen, B. E.; Attarbaschi, A.; Rademacher, A.; Elitzur, S.; Jacoby, E.; De Moerloose, B.; Svenberg, P.; Ancliff, P.; Sramkova, L.; Buldini, B.; Balduzzi, A.; Boer, J. M.; Mielcarek, M.; Ceppi, F.; Ansari, M.; Halter, J.; Schmiegelow, K.; Locatelli, F.; DelBufalo, F.; Stanulla, M.; Kulozik, A. E.; Schrappe, M.; Rohrlich, P.; Cave, H.; Baruchel, A.; von Stack

2026-04-11 oncology 10.64898/2026.04.08.26350164 medRxiv
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Children with relapsed or refractory acute lymphoblastic leukemia (ALL) require more effective and less toxic therapies. We established a prospective, multicenter Drug Response Profiling (DRP) registry (NCT06550102) integrating functional testing into precision-guided treatment. DRP was performed for 340 patients from 17 European countries with a turn-around time of two-weeks. Image-based drug screening with over 135000 unique perturbations revealed a heterogeneous landscape of ex vivo responses to 88 drugs on average. Ranking drug responses across the patient cohort defined individual drug fingerprints, identifying "DRP twins" by similarity in sensitivity and resistance independent of genetic ALL subtypes. Of 239 high-risk patients with follow-up, DRP-informed interventions were reported for 63 patients (26%). Patients received combination therapies based on venetoclax, tyrosine kinase inhibitors, trametinib, bortezomib or selinexor, resulting in objective clinical responses in 43 cases (68%). Precision-guided treatments allowed bridging to cellular therapies in 42 patients among whom 28 (67%) were still alive with a median follow-up of 21 months after DRP (IQR: 14.7-26.6 months). Top responders to venetoclax, ranked within the first tertile of the cohort, had superior 1-year event-survival compared to venetoclax non-responders (0.57 [95% CI, 0.39-0.85] vs. 0.25 [95% CI, 0.11-0.58]). Collectively, these findings demonstrate the feasibility and clinical relevance of functional profiling within an international network. This scalable framework enables individualized therapy selection for enrolment in adaptive precision trials for high-risk pediatric ALL.

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Genetic Architecture and Myocardial Fibrotic Remodeling in Mitral Valve Prolapse

Small, A. M.; Yu, M.; Berrandou, T. E.; Georges, A.; Huff, M.; Morningstar, J. E.; Rand, S. A.; Koyama, S.; Lee, J.; Vy, H. M.; Farber-Eger, E.; Jin, S.; Dieterlen, M.-T.; Kontorovich, A. R.; Yang, T.-Y.; Do, R.; Dressen, M.; Krane, M.; Feirer, N.; Doppler, S. A.; Schunkert, H.; Trenkwalder, T.; Wells, Q. S.; Berger, K.; Ostrowski, S. R.; Sorensen, E.; Pedersen, O. B.; Bundgaard, J. S.; Ghouse, J.; Bundgaard, H.; Ganna, A.; Erikstrup, C.; Mikkelsen, C.; Bruun, M. T.; Aagaard, B.; Ullum, H.; Abner, E.; Slaugenhaupt, S. A.; Nadauld, L.; Knowlton, K.; Helgadottir, A.; Sveinbjornsson, G.; Gudbjart

2026-04-13 cardiovascular medicine 10.64898/2026.04.09.26350328 medRxiv
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Mitral valve prolapse (MVP) is the most common cause of primary mitral regurgitation and is associated with the development of malignant arrhythmias, often in the context of myocardial fibrosis. The genetic architecture of MVP, and whether there are genetic factors explaining why only some individuals with MVP have adverse outcomes, remains poorly understood. We performed a meta-analysis of genome-wide association studies (GWAS) for MVP encompassing 21,517 cases among a total sample size of over 2.2 million individuals. We discovered 89 genomic risk loci for MVP, of which 72 were novel findings. Prioritization of causal genes and pathways using epigenetic and transcriptomic data from mitral valve and extra-valvular tissues replicated known gene associations to MVP including those involved in TGF-{beta} signaling and extracellular matrix biology, but additionally emphasized a role in MVP for biological pathways relevant to cardiomyocyte biology. Accordingly, we identified several MVP risk loci with pleiotropy to cardiomyopathies, especially hypertrophic cardiomyopathy, and demonstrated a significant genetic correlation between MVP and hypertrophic cardiomyopathy. Finally, we interrogated snRNA-seq data in human papillary muscle tissue from two individuals with severe MVP, characterizing genes associated with both risk of papillary muscle fibrosis and MVP.

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Wearable-derived physiological features for trans-diagnostic disease comparison and classification in the All of Us longitudinal real-world dataset

Huang, X.; Hsieh, C.; Nguyen, Q.; Renteria, M. E.; Gharahkhani, P.

2026-04-13 epidemiology 10.64898/2026.04.07.26350352 medRxiv
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Wearable-derived physiological features have been associated with disease risk, but most current studies focus on single conditions, limiting understanding of cross-disease patterns. This study adopts a trans-diagnostic approach to examine whether wearable data capture shared and condition-specific physiological signatures across multiple chronic conditions spanning physical and mental health, and then evaluates the utility of these features for disease classification. A total of 9,301 patients with at least 21 days of consecutive FitBit data from the All of Us Controlled Tier Dataset version 8 were analyzed. Disease subcohorts included cardiovascular disease (CVD), diabetes, obstructive sleep apnea (OSA), major depressive disorder (MDD), anxiety, bipolar disorder, and attention-deficit/ hyperactivity disorder (ADHD), chosen based on prevalence and relevance. Logistic regression and XGBoost models were fitted for each disease subcohort versus the control cohort. We found that compared to using just baseline demographic and lifestyle features, incorporating wearable-derived features enabled improved classification performance in all subcohorts for both models, except for ADHD where improvement was mainly observed for ROC-AUC in logistic regression model likely due to the smaller sample size in ADHD subcohort. The largest performance gains were observed in MDD (increase in ROC-AUC of 0.077 for Logistic regression, 0.071 for XGBoost; p < 0.001) and anxiety (increase in ROC-AUC of 0.077 for logistic regression, 0.108 for XGBoost; p < 0.001). This study provides one of the first comprehensive transdiagnostic evaluations of wearable-derived features for disease classification, highlighting their potential to enhance risk stratification in the real-world setting as a practical complement to clinical assessments and providing a foundation to explore more fine-grained wearable data. Author summaryWearable devices such as fitness trackers and smartwatches are becoming increasingly popular and affordable, providing continuous measurements of heart rate, physical activity, and sleep. Alongside the growing digitization of health records, this creates new opportunities for large-scale, real-world health studies. In this study, we analyzed wearable-derived physiological patterns across a range of chronic conditions spanning both physical and mental health to better understand how these signals relate to disease risk. We found that incorporating wearable-derived heart rate, activity and sleep features improved disease risk classification across several conditions, with particularly strong gains for major depressive disorder and anxiety. By examining how individual features contributed to model predictions, we also identified meaningful associations between physiological signals and disease risk. For example, both duration and day-to-day variation of deep and rapid eye movement (REM) sleep were associated with increased risk in certain conditions. Our study supports the development of real-time, automated tools to assess disease risk alongside clinical care.

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Frequency of bacterial STI testing amongst people accessing sexual health services in England, 2024: a cross-sectional analysis of national surveillance data

Baldry, G.; Harb, A.-K.; Findlater, L.; Ogaz, D.; Migchelsen, S. J.; Fifer, H.; Saunders, J.; Mohammed, H.; Sinka, K.

2026-04-13 epidemiology 10.64898/2026.04.08.26349546 medRxiv
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ObjectivesWe determined the frequency of sexually transmitted infection (STI) testing among people accessing sexual health services (SHS) in England. MethodsWe assessed STI testing frequency in face-to-face and online SHSs in England using data from the GUMCAD STI surveillance system. We quantified different combinations of tests (e.g. single chlamydia test or full STI screen), number of tests completed in 2024 and test positivity by sociodemographic and behavioural characteristics, as well as clinical setting and outcomes. ResultsOverall, there were 2,222,028 attendances at SHS in England in 2024 that involved tests for chlamydia, gonorrhoea, syphilis and/or HIV. Most of these attendances involved tests for all four of these STIs. Most people accessing SHS in England tested once (80.1%), and a small minority (1.9%) tested at least quarterly (4+ times). Some groups had a comparably larger proportion of quarterly testers; these included gay, bisexual, and other men who have sex with men (GBMSM) (6.7%), London residents (3.6%), online testers (2.5%), people using HIV-PrEP (13%), and people with 5+ partners in the previous 3 months (10.6%). Only 10.5% of GBMSM reporting higher-risk sexual behaviours tested quarterly despite recommendations for quarterly testing in this group. ConclusionsThe majority of those who tested for STIs in England in 2024 only tested once. The minority who tested at least quarterly had a higher proportion of GBMSM, people using HIV-PrEP, London residents and people reporting higher risk behaviours. Quarterly testing often appears to be aligned with current testing recommendations in England; however, we also observed that only a low proportion of behaviourally high-risk GBMSM and HIV-PrEP users are meeting these recommendations. It is important to acknowledge groups with lower or higher testing frequency when developing interventions and updating guidelines related to STI testing. WHAT IS ALREADY KNOWN ON THIS TOPICThe effectiveness of asymptomatic testing for chlamydia and gonorrhoea in gay, bisexual and other men who have sex with men (GBMSM), and the potential impact of the consequent increased antibiotic use on rising antimicrobial resistance and individual harm has recently been questioned. Testing and treatment remains a key pillar of STI prevention and management; despite this, there is limited evidence of STI testing frequency within sexual services (SHS) on a national level. WHAT THIS STUDY ADDSThis analysis shows that the majority of people attending SHSs in England in 2024 tested once, and only a small proportion of behaviourally high-risk people tested frequently. HOW THIS STUDY MIGHT AFFECT RESEARCH, PRACTICE OR POLICYAwareness of groups that are behaviourally high risk but testing infrequently is important to guide interventions and messaging regarding STI testing. The low levels of frequent testing, even among those who would be recommended quarterly testing under UK guidelines, provides important context for wider discussion around asymptomatic STI screening.

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Feasibility of Endothelial Cell Isolation from Routine Coronary Function Testing in ANOCA Patients

de Jong, E. A. M.; Kapteijn, D.; Daniels, M.; Nijkamp, T.; Zalewski, P. D.; Beltrame, J. F.; Damman, P.; Civelek, M.; Benavente, E. D.; van de Hoef, T. P.; Den Ruijter, H. M.

2026-04-13 cardiovascular medicine 10.64898/2026.04.09.26350551 medRxiv
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Background | Angina with nonobstructive coronary arteries (ANOCA) is a heterogeneous condition encompassing distinct endotypes representing different underlying pathophysiological mechanisms. Endothelial dysfunction is considered a central hallmark of ANOCA. However, studying patient-derived endothelial cells (ECs) remains challenging due to the limited availability of disease-specific endothelial samples. We therefore aimed to assess the feasibility of isolating and culturing ECs from catheterization material obtained during routine coronary function testing in ANOCA patients. Methods | Catheterization material was collected from 79 ANOCA patients (84% female, age 58{+/-}10 years) undergoing coronary function testing. ECs were isolated, expanded and characterized using immunostaining, flow cytometry, gene expression profiling and functional assays. Results | EC isolation was successful in 43% of cases and resulted in 34 primary EC cultures that were expanded up to passage 10. Isolation success was independent of clinical or procedural characteristics. Isolated cells exhibited typical EC morphology and expressed EC markers confirmed by immunostaining, flow cytometry and gene expression analyses. EC marker gene expression remained largely stable over passages. However, stress- and defense-related gene expression programs increased over time, while proliferation-related processes decreased. Functional assays demonstrated that the coronary catheterization-derived ECs showed typical properties of wound healing, angiogenesis, activation responses upon stimuli and monocyte adhesion. Conclusions | This study demonstrates the feasibility of isolating and expanding ECs directly from catheterization material collected during routine coronary function testing in ANOCA patients. These patient-derived ECs retain characteristic endothelial features and functionality. This approach offers primary EC cultures to study the mechanisms underlying endothelial dysfunction in ANOCA.

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Time to diagnosis among children and adolescents with cancer in Quebec, Canada: a population-based study

Mullen, C.; Barr, R. D.; Strumpf, E.; El-Zein, M.; Franco, E. L.; Malagon, T.

2026-04-13 epidemiology 10.64898/2026.04.09.26350491 medRxiv
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BackgroundTimely cancer diagnosis in children and adolescents is critical to improving outcomes, yet substantial variation in diagnostic intervals persists across cancer types and care settings. We aimed to quantify time to diagnosis and assess variations by patient, demographic, and system-level factors. MethodsWe conducted a retrospective population-based study of children and adolescents aged 0-19 years diagnosed with one of 12 common cancers between 2010 and 2022 in Quebec, Canada. The diagnostic interval was defined as the time from first cancer-related healthcare encounter to diagnosis. We calculated medians and interquartile ranges (IQR) overall and by cancer type and used multivariable quantile regression to identify factors associated with time to diagnosis at the 25th, 50th, and 75th percentiles. ResultsAmong 2,927 individuals with cancer, diagnostic intervals varied by cancer type and age. Median intervals were longest for carcinomas (100 days; IQR 33-192) and shortest for leukemias (8 days; IQR 3-44). Compared with children living in Montreal, living in regional areas and other large urban centres was associated with longer 50th and 75th percentiles of time to diagnosis for hepatic and central nervous system (CNS) tumours. Diagnostic intervals were shorter in the post-pandemic period (2020-2022) across several cancer sites, with CNS tumours showing reductions across all quantiles. InterpretationDiagnostic timeliness differed by cancer type, age, and rurality, but not by sex, material, or social deprivation. The shorter diagnostic intervals observed in the post-pandemic period suggest that pandemic-related changes in care pathways may have expedited diagnosis for some cancers.

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SARS-CoV-2 Introductions into Lao PDR Revealed by Genomic Surveillance, 2021-2024

Panapruksachat, S.; Troupin, C.; Souksavanh, M.; Keeratipusana, C.; Vongsouvath, M.; Vongphachanh, S.; Vongsouvath, M.; Phommasone, K.; Somlor, S.; Robinson, M. T.; Chookajorn, T.; Kochakarn, T.; Day, N. P.; Mayxay, M.; Letizia, A. G.; Dubot-Peres, A.; Ashley, E. A.; Buchy, P.; Xangsayarath, P.; Batty, E. M.

2026-04-13 epidemiology 10.64898/2026.04.09.26349480 medRxiv
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We used 2492 whole genome sequences from Laos to investigate the molecular epidemiology of SARS-CoV-2 from 2021 through 2024, covering the major waves of COVID-19 disease in Laos including time periods of travel restrictions and after relaxation of travel across international borders. We identify successive waves of COVID-19 caused by shifts in the dominant lineage, beginning with the Alpha variant in April 2021 and continuing through the Delta and Omicron variants. We quantify a shift from a small number of viral introductions responsible for widespread transmission in early waves to a larger number of introductions for each variant after travel restrictions were lifted, and identify potential routes of introduction into the country. Our study underscores the importance of genomic surveillance to public health responses to characterize viral transmission dynamics during pandemics.

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Understanding community knowledge, attitudes and practices related to participation in household transmission investigations during infectious disease outbreaks

Meagher, N.; Hettiarachchi, D.; Hawkins, M. R.; Tavlian, S.; Spirkoska, V.; McVernon, J.; Carville, K. S.; Price, D. J.; Villanueva Cabezas, J. P.; Marcato, A. J.

2026-04-13 epidemiology 10.64898/2026.04.08.26350464 medRxiv
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BackgroundThe World Health Organization has developed several global template protocols for epidemiological investigations, including for household transmission investigations (HHTIs). These investigations facilitate rapid characterisation of novel or re-emerging respiratory pathogens and support evidence-based public health actions. Beyond technical readiness, community buy-in is central to the feasibility and acceptability of HHTIs. Research is needed to determine the perceived legitimacy among the community to inform local protocol adaptation and development of implementation plans that consider community attitudes and needs. MethodsIn 2025, we conducted a convenience survey of community members living in Victoria, Australia to explore: their understanding of emerging respiratory diseases; their willingness to take part in public health surveillance activities such as HHTIs; the acceptability of clinical and epidemiological data collection and respiratory/blood sample collection as main components of HHTIs, and; participant comfort towards including their companion animals in HHTIs. ResultsWe received 282 survey responses, of which 235 were included in the analysis dataset. Compared to the general Victorian population, our participants included a higher proportion of participants who reported being female, tertiary-educated, of Aboriginal and/or Torres Strait Islander heritage, born in Australia and speaking only English at home. Participants indicated overall high levels of comfort and acceptability towards participation in HHTIs, particularly in relation to clinical and epidemiological data collection, with lesser but still high levels of comfort with providing multiple respiratory specimens in a 14-day period. Participants were least comfortable with other specimens such as urine and blood. Involving companion animals in HHTIs was similarly acceptable as human-focused components. ConclusionsDespite our survey population being non-representative of the general Victorian population, our findings provide valuable descriptive insights into the acceptability of HHTIs in Victoria, Australia from which to benchmark future local and international surveys and community engagement activities.

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WITHDRAWN: Detection of Measles Virus RNA in Wastewater: Monitoring for Wild-Type and Vaccine-Derived Strains in a National Preparedness Trial

Ahmed, W.; Gebrewold, M.; Verhagen, R.; Koh, M.; Gazeley, J.; Levy, A.; Simpson, S.; Nolan, M.

2026-04-13 epidemiology 10.64898/2026.04.09.26350527 medRxiv
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Wastewater surveillance (WWS) is established as a vital tool for monitoring polio and SARS-CoV-2 with potential to improve surveillance for many other infectious diseases. This study evaluated the feasibility of detecting measles virus (MeV) RNA in wastewater as part of a national WS preparedness trial in Brisbane, Australia, from March to June 2025. Composite and passive sampling methods were employed in parallel at three wastewater treatment plants serving populations between 230,000 and 584,000. Nucleic acids were extracted and analyzed using RT-qPCR targeting MeV N and M genes to distinguish wild-type and vaccine strains. MeV RNA were detected in both 24-hour composite and passive samples on May 26 to 27, 2025 from the largest catchment of 584,000 which also included an international airport. No measles cases were reported in this city or region within 4 weeks of the WS detections. These were confirmed as vaccine-derived measles virus (MeVV) strain via specific RT-qPCR assay. Extraction recoveries varied (11.5% to 70.5%), with passive sampling showing higher efficiency. This is the first report of use of passive samples for detection of MeV. These findings are consistent with other studies reporting WWS results of both MeVV genotype A and wild type genotype B and/or D. It demonstrates the potential for sensitive MeV WWS with rapid differentiation of MeVV from wild type MeV shedding, including in airport transport hubs and with different sample types. Use of WWS could strengthen measles surveillance by enabling rapid detection of MeV RNA and supporting outbreak preparedness and response. This requires optimised methods which are specific to or differentiate wild-type MeV from MeVV. Furthermore, the successful detection of MeV using passive sampling in this study highlights its potential for deployment in diverse global contexts which may include non-sewered settings.