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Neurophotonics

SPIE-Intl Soc Optical Eng

Preprints posted in the last 7 days, ranked by how well they match Neurophotonics's content profile, based on 37 papers previously published here. The average preprint has a 0.03% match score for this journal, so anything above that is already an above-average fit.

1
Analytical Choices Impact the Estimation of Rhythmic and Arrhythmic Components of Brain Activity

da Silva Castanheira, J.; Landry, M.; Fleming, S. M.

2026-04-11 neuroscience 10.1101/2025.09.24.678322 medRxiv
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Brain activity comprises both rhythmic (periodic) and arrhythmic (aperiodic) components. These signal elements vary across healthy aging, and disease, and may make distinct contributions to conscious perception. Despite pioneering techniques to parameterize rhythmic and arrhythmic neural components based on power spectra, the methodology for quantifying rhythmic activity remains in its infancy. Previous work has relied on parametric estimates of rhythmic power extracted from specparam, or estimates of rhythmic power obtained after detrending neural spectra. Variation in analytical choices for isolating brain rhythms from background arrhythmic activity makes interpreting findings across studies difficult. Whether these current approaches can accurately recover the independent contribution of these neural signal elements remains to be established. Here, using simulation and parameter recovery approaches, we show that power estimates obtained from detrended spectra conflate these two neurophysiological components, yielding spurious correlations between spectral model parameters. In contrast, modelled rhythmic power obtained from specparam, which detrends the power spectra and parametrizes brain rhythms, independently recovers the rhythmic and arrhythmic components in simulated neural time series, minimising spurious relationships. We validate these methods using resting-state recordings from a large cohort. Based on our findings, we recommend modelled rhythmic power estimates from specparam for the robust independent quantification of rhythmic and arrhythmic signal components for cognitive neuroscience.

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Individualised evoked response detection based on the spectral noise colour

Undurraga Lucero, J. A.; Chesnaye, M.; Simpson, D.; Laugesen, S.

2026-04-13 health informatics 10.64898/2026.04.11.26350685 medRxiv
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Objective detection of evoked potentials (EPs) is central to digital diagnostics in hearing assessment and clinical neurophysiology, yet current approaches remain time-intensive and sensitive to inter-individual noise variability. Many existing detection methods rely on population-based assumptions or computationally demanding procedures, limiting robustness and efficiency in real-world clinical settings. We present Fmpi, a digital EP detection framework enabling individualised, real-time response detection through analytical modelling of the spectral colour and temporal dynamics of background noise within each recording. Using extensive simulations and large-scale human electroencephalography datasets spanning brainstem, steady-state, and cortical EPs recorded in adults and infants, we demonstrate performance comparable or superior to state-of-the-art bootstrapped methods while operating at a fraction of the computational cost and maintaining well-controlled sensitivity with improved specificity. Importantly, Fmpi incorporates a futility detection mechanism enabling early termination of uninformative recordings, reducing testing time without compromising diagnostic reliability.

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Development of a transformation model to analyze horizontal saccades using electrooculography through correlation between video-oculography and electrooculography

Kim, D. Y.; Kim, T.-J.; Kim, Y.; Yoo, J.; Jeong, J.; Lee, S.-U.; Choi, J. Y.

2026-04-16 neurology 10.64898/2026.04.14.26350920 medRxiv
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Saccadic eye movements are established biomarkers in neuroscience and clinical neurology, where video-oculography (VOG) remains the gold standard. However, VOG's high cost, bulky equipment, and poor portability restrict its clinical utility. Electrooculography (EOG) offers a promising alternative by detecting cornea-retinal potential changes during eye movements. To enable quantitative saccadic analysis using EOG as a VOG alternative, this study develops and validates a mathematical transformation model converting EOG data into VOG-equivalent values. A prospective observational study was conducted on 4 healthy adults without neurological or sleep disorders. Horizontal saccades were recorded simultaneously using EOG and VOG during controlled gaze shifts. EOG peak saccadic velocity was derived from voltage change rate, whereas VOG was calculated from angular displacement over time. A derivation dataset of fixed horizontal saccades ({+/-}20{degrees}) formulated the transformation model, achieving a strong correlation coefficient (r = 0.95 rightward, r = 0.93 leftward, p < 0.0001). Multiple filter settings were evaluated, and 0.3 Hz high-pass and 35 Hz low-pass filtering were identified as optimal. The fixed horizontal saccades derived model was applied to a validation dataset of random horizontal saccades, confirming robustness across saccades without significant differences from VOG measurements. These findings establish EOG's feasibility for quantitative analysis of horizontal saccades and provide a validated transformation model. By systematically optimizing filtering parameters, this approach enables EOG as a cost-effective VOG alternative while maintaining high-precision measurement accuracy.

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AENEAS Project: First real-time intraoperative application of machine vision-based anatomical guidance in neurosurgery

Sarwin, G.; Ricciuti, V.; Staartjes, V. E.; Carretta, A.; Daher, N.; Li, Z.; Regli, L.; Mazzatenta, D.; Zoli, M.; Seungjun, R.; Konukoglu, E.; Serra, C.

2026-04-11 surgery 10.64898/2026.04.09.26348607 medRxiv
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Background and Objectives: We report the first intraoperative deployment of a real-time machine vision system in neurosurgery, derived from our previous anatomical detection work, automatically identifying structures during endoscopic endonasal surgery. Existing systems demonstrate promising performance in offline anatomical recognition, yet so far none have been implemented during live operations. Methods: A real-time anatomy detection model was trained using the YOLOv8 architecture (Ultralytics). Following training completion in the PyTorch environment, the model was exported to ONNX format and further optimized using the NVIDIA TensorRT engine. Deployment was carried out using the NVIDIA Holoscan SDK, the system ran on an NVIDIA Clara AGX developer kit. We used the model for real-time recognition of intraoperative anatomical structures and compared it with the same video labelled manually as reference. Model performance was reported using the average precision at an intersection-over-union threshold of 0.5 (AP50). Furthermore, end-to-end delay from frame acquisition to the display of the annotated output was measured. Results: A mean AP50 of 0.56 was achieved. The model demonstrated reliable detection of the most relevant landmarks in the transsphenoidal corridor. The mean end-to-end latency of the model was 47.81 ms (median 46.57 ms). Conclusion: For the first time, we demonstrate that clinical-grade, real-time machine-vision assistance during neurosurgery is feasible and can provide continuous, automated anatomical guidance from the surgical field. This approach may enhance intraoperative orientation, reduce cognitive load, and offer a powerful tool for surgical training. These findings represent an initial step toward integrating real-time AI support into routine neurosurgical workflows.

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Wearable sleep staging using photoplethysmography and accelerometry across sleep apnea severity: a focus on very severe sleep apnea

Ogaki, S.; Kaneda, M.; Nohara, T.; Fujita, S.; Osako, N.; Yagi, T.; Tomita, Y.; Ogata, T.

2026-04-13 health informatics 10.64898/2026.04.09.26350266 medRxiv
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Study ObjectivesTo evaluate wearable sleep staging across sleep apnea severity, including very severe sleep apnea defined as an apnea-hypopnea index (AHI)[&ge;] 50 events/h, and to assess how training-set composition affects performance in this subgroup. MethodsWe analyzed 552 overnight recordings, 318 from the Sleep Lab Dataset and 234 from the Hospital Dataset. In the Hospital Dataset, 26.5% had very severe sleep apnea. We developed a deep learning model for sleep staging using RR intervals from wrist-worn photoplethysmography and three-axis accelerometry. Baseline performance was assessed by cross-validation under 5-stage and 4-stage staging. We examined night-level associations with AHI severity. We also compared the baseline model with an ablation model trained on the same number of recordings but with more Sleep Lab Dataset and lower-AHI Hospital Dataset recordings, evaluating both models in the very severe subgroup. ResultsIn 5-stage classification, Cohens kappa was 0.586 in the Sleep Lab Dataset and 0.446 in the Hospital Dataset. Under 4-stage staging, the gap narrowed, with kappa values of 0.632 and 0.525, respectively. In the Hospital Dataset, performance declined with increasing AHI severity. Among 62 recordings with very severe sleep apnea, reducing high-AHI representation in training lowered kappa from 0.365 to 0.303. ConclusionsWearable sleep staging performance declined across greater sleep apnea severity in this clinical cohort. Clinical utility may benefit from training data that better represent the target severity spectrum and from selecting staging granularity to match the intended use case. Statement of SignificanceRepeated laboratory polysomnography is impractical for long-term sleep apnea management. Wearable sleep staging could support scalable monitoring, yet its reliability in clinically severe sleep apnea has remained unclear. This study developed and evaluated a wearable sleep staging approach in both sleep-laboratory and hospital cohorts. The hospital cohort included many severe and very severe cases. Performance was lower in the hospital cohort and declined with greater sleep apnea severity. A coarser staging scheme reduced the gap between cohorts, and models trained without representative very severe cases performed worse in this target population. These findings highlight the value of severity-aware model development and motivate future multi-night home validation with reliability cues.

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A safer fluorescent in situ hybridization protocol for cryosections

Chihara, A.; Mizuno, R.; Kagawa, N.; Takayama, A.; Okumura, A.; Suzuki, M.; Shibata, Y.; Mochii, M.; Ohuchi, H.; Sato, K.; Suzuki, K.-i. T.

2026-04-16 molecular biology 10.1101/2025.05.25.655994 medRxiv
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Fluorescent in situ hybridization (FISH) enables highly sensitive, high-resolution detection of gene transcripts. Moreover, by employing multiple probes, this technique allows for multiplexed, simultaneous detection of distinct gene expression patterns spatiotemporally, making it a valuable spatial transcriptomics approach. Owing to these advantages, FISH techniques are rapidly being adopted across diverse areas of basic biology. However, conventional protocols often rely on volatile, toxic reagents such as formalin or methanol, posing potential health risks to researchers. Here, we present a safer protocol that replaces these chemicals with low-toxicity alternatives, without compromising the high detection sensitivity of FISH. We validated this protocol using both in situ hybridization chain reaction (HCR) and signal amplification by exchange reaction (SABER)-FISH in frozen sections of various model organisms, including mouse (Mus musculus), amphibians (Xenopus laevis and Pleurodeles waltl), and medaka (Oryzias latipes). Our results demonstrate successful multiplexed detection of morphogenetic and cell-type marker genes in these model animals using this safer protocol. The protocol has the additional advantage of requiring no proteolytic enzyme treatment, thus preserving tissue integrity. Furthermore, we show that this protocol is fully compatible with EGFP immunostaining, allowing for the simultaneous detection of mRNAs and reporter proteins in transgenic animals. This protocol retains the benefits of highly sensitive, multiplexed, and multimodal detection afforded by integrating in situ HCR and SABER-FISH with immunohistochemistry, while providing a safer option for researchers, thereby offering a valuable tool for basic biology.

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Spatial Decomposition of Longitudinal RNFL Maps Reveals Distinct Modes of Glaucomatous Progression with Structure Function and Genetic Signatures

Chen, L.; Zhao, Y.; Moradi, M.; Eslami, M.; Wang, M.; Elze, T.; Zebardast, N.

2026-04-11 health informatics 10.64898/2026.04.09.26350387 medRxiv
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Purpose: To determine whether spatial decomposition of longitudinal retinal nerve fiber layer (RNFL) change maps reveals distinct modes of glaucomatous progression masked by conventional averaging, and to validate these modes through structure function mapping and genetic association analysis. Methods: Pixel wise RNFL rates of change were computed from longitudinal optic disc OCT scans of 15,242 eyes (8,419 adults with primary open angle glaucoma [POAG]; Massachusetts Eye and Ear, 1998 to 2023). A loss only constraint zeroed all thickening values, reflecting the biological prior that adult RNFL does not regenerate. Nonnegative matrix factorization decomposed these maps into spatial progression components (80% training set). Components were evaluated in a heldout set (20%) for retinotopic structure function concordance, visual field (VF) progressor classification against global and quadrant RNFL rates, and enrichment of genetic association signals at established POAG loci. Results: Six anatomically distinct progression patterns emerged, including diffuse circumferential loss, focal peripapillary defects, and arcuate bundle degeneration. Pattern based models significantly outperformed global RNFL rate for classifying VF progressors (area under the curve, 0.750 [95% CI, 0.709 to 0.790] vs. 0.702; P = .0096) and explained additional variance in functional decline (Nagelkerke pseudoR2, 0.301 vs. 0.198; P = .0011). Structure function mapping confirmed retinotopic coherence. Spatial phenotypes recovered stronger genetic signals than global rates at 85.3% of established POAG loci, suggesting they capture more biologically homogeneous endophenotypes of progression. Conclusions: Glaucomatous structural progression occurs through spatially distinct modes with independent structure function and genetic signatures that conventional RNFL averaging obscures.

8
Apnea-hypopnea index estimation with wrist-worn photoplethysmography

Fonseca, P.; Ross, M.; van Meulen, F.; Asin, J.; van Gilst, M. M.; Overeem, S.

2026-04-11 health informatics 10.64898/2026.04.08.26350411 medRxiv
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ObjectiveLong term monitoring of obstructive sleep apnea (OSA) severity may be relevant for several clinical applications. We developed a method for estimating the apnea-hypopnea index (AHI) using wrist-worn, reflective photoplethysmography (PPG). ApproachA neural network was developed to detect respiratory events using PPG and PPG-derived sleep stages as input. The development database encompassed retrospective data from three polysomnographic datasets (N=3111), including a dataset with concurrent reflective PPG recordings from a wrist-worn device (N=969). The model was pre-trained with (transmissive) finger-PPG signals from all overnight recordings and then fine-tuned to wrist-PPG characteristics using transfer learning. Validation was performed on the test portion of the development set and on a fourth, external hold-out dataset containing both wrist-PPG and PSG data (N=171). Performance was evaluated in terms of AHI estimation accuracy and OSA severity classification. Main ResultsThe fine-tuned wrist-PPG model demonstrated strong agreement with the PSG-derived gold-standard AHI, achieving intra-class correlation coefficients of 0.87 in the test portion of the development set and 0.91 in the external hold-out validation set. Diagnostic performance was high, with accuracies above 80% for all severity thresholds. SignificanceThe study highlights the potential of reflective PPG-based AHI estimation, achieving high estimation performance in comparison with PSG. These measurements can be performed with relatively comfortable sensors integrated in convenient wrist-worn wearables, enabling long-term assessment of sleep disordered breathing, both in a diagnostic phase, and during therapy follow-up.

9
Signal-to-noise evaluation of dynamic versus static 18FDG-PET in focal epilepsy via Bayesian regional estimated signal quality analysis

Quigg, M.; Chernyavskiy, P.; Terrell, W.; Smetana, R.; Muttikal, T. E.; Wardius, M.; Kundu, B.

2026-04-14 neurology 10.64898/2026.04.12.26350712 medRxiv
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Background and Purpose: 2-[18F] fluoro-2-deoxy-D-glucose positron emission tomography (static PET) has mixed specificity and sensitivity in targeting epileptic zones in the noninvasive stage of epilepsy surgery evaluations. We compared the signal quality of static PET compared to a method of interictal dynamic PET (iD-PET). Materials and Methods: We calculated the signal quality of static PET and iD-PET obtained from a cohort of patients with focal epilepsy. We developed a Bayesian regional estimated signal quality (BRESQ) technique to objectively compare signal-to-noise ratios (SNRs) by region of interest (ROI) within subjects. Results: Adjusted for ROI size and neighboring regions, iDPET was superior to sPET with probability >95% in 8/36 regions; >90% in 21/36 regions; >80% in 29/36 regions. The top five regions with the largest adjusted SNR differences (greatest magnitude of iDPET superiority) were the Temporal Mesial (Left and Right), Occipital Lateral (Left and Right), and the Left Frontal Inferior Base. Conclusions: We found that iDPET yielded a superior SNR in most ROI. BRESQ offers a scalable and generalizable method to quantify signal quality between brain mapping modalities.

10
Mechanistic Insights into Skin Sympathetic Nerve Activity Dynamics in Healthy Subjects Through a Two-Layer Signal-Analytical and Closed-Loop Physiological Modeling Framework

Lin, R.; Halfwerk, F. R.; Donker, D. W.; Tertoolen, J.; van der Pas, V. R.; Laverman, G. D.; Wang, Y.

2026-04-13 health informatics 10.64898/2026.04.11.26350680 medRxiv
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Objective: Skin sympathetic nerve activity (SKNA) has emerged as a promising non-invasive surrogate measure of sympathetic drive, but its relevant physiological characteristics remain ill-defined. This observational study aims to investigate its regulatory patterns during rest and Valsalva maneuver (VM) in healthy participants. Method: Using a two-layer strategy integrating signal analysis and physiological modelling, we analyzed data recorded from 41 subjects performing repeated VMs. The observational layer includes time-domain feature comparisons using linear mixed-effect models, and time-varying spectral coherence analysis. The mechanistic layer proposes a mathematical model to investigate whether baroreflex and respiratory modulation are sufficient to reproduce the observed HR and average SKNA (aSKNA) dynamics. Main Results: Mean integrated SKNA (iSKNA) showed more significant change than HRV for VM induced effects. We also found mean iSKNA increase during VM varies with BMI and sex. The coherence analysis indicated that iSKNA strongly synchronized with EDR under resting conditions. The proposed model successfully reproduced main characteristics of aSKNA dynamics, yielding a high median Pearson correlation coefficient of 0.80 ([Q1, Q3] = [0.60, 0.91]). In contrast, HR dynamics were only partially captured, with a median PCC of 0.37 ([Q1, Q3] = [0.16, 0.55]). These results likely suggest SKNA provides a more direct representation of sympathetic burst dynamics during VM in healthy subjects. Significance: This study provides convergent evidence that SKNA reflects known autonomic regulatory influences in healthy subjects. These findings strengthen the physiological interpretability of SKNA while clarifying its appropriate use as a practical biomarker of sympathetic function.

11
A standardized non-linear approach to studying menstrual cycle effects on brain and behavior

Perovic, M.; Mack, M. L.

2026-04-12 sexual and reproductive health 10.64898/2026.04.10.26350619 medRxiv
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Menstrual cycles are major biological events with extensive effects on the brain and cognition, experienced by half of the human population. To develop a comprehensive account of human cognition, it is necessary to successfully integrate and characterize menstrual cycle effects in cognitive science research. However, current approaches to menstrual cycle analysis suffer from low data resolution and are not well-equipped to capture the highly variable, non-linear changes in outcomes of interest across the cycle. We present a validated standardized method remedying these issues, demonstrate its utility using hormonal, behavioral, and neuroimaging data, and provide an open-source toolkit to facilitate its use.

12
In Their Own Words: Noise Complaint Data Reveals Impacts of Military Aviation

Huang, C.-H. S.; Kuehne, L. M.; Jacuzzi, G.; Olden, J. D.; Seto, E.

2026-04-16 occupational and environmental health 10.64898/2026.04.14.26350904 medRxiv
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Military aviation training noise remains understudied despite its widespread impacts across urban, rural, and wilderness areas. The predominance of low-frequency noise and repetitive training can create pervasive noise pollution, yet past research often fails to capture the full range of health and quality-of-life effects. This study analyzed two complaint datasets related to Whidbey Island Naval Air Station noise: U.S. Navy records (2017-2020) and Quiet Skies Over San Juan County data (2021-2023). We analyzed and mapped sentiment intensity from noise complaints relative to modeled annual noise exposure, developed a typology to classify impacts, and modeled the environmental and operational factors influencing complaints. Findings revealed widespread negative sentiment and anger, often beyond the bounds of estimated noise contours, suggesting that annual cumulative noise models inadequately estimate community impacts. Complaints consistently highlighted sleep disturbance, hearing and health concerns, and compromised home environments due to shaking, vibration, and disruption of daily life. Residents also reported significant social, recreational, and work disruptions, along with feelings of fear, helplessness, and concern for children's well-being. The number of complaints were strongly associated with training schedules, with late-night sessions being the strongest predictor. A delayed response pattern suggests residents reach a frustration threshold before filing complaints. Overall, our findings demonstrate persistent negative sentiment and diverse impacts from military aviation noise. Results highlight the need for improved noise metrics, modeling and operational adjustments to mitigate the most disruptive effects.

13
A Modified Percutaneous Spinal Cord Stimulation Implant Approach to Target the Ventral Spinal Cord

Valestrino, K. J.; Ihediwa, C. V.; Dorius, G. T.; Conger, A. M.; Glinka-Przybysz, A.; McCormick, Z. L.; Fogarty, A. E.; Mahan, M. A.; Hernandez-Bello, J.; Konrad, P. E.; Burnham, T. R.; Dalrymple, A. N.

2026-04-13 surgery 10.64898/2026.04.06.26350176 medRxiv
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ObjectivesEpidural spinal cord stimulation (SCS) is an emerging therapy for motor rehabilitation following spinal cord injury (SCI) and other motor disorders. Conventionally, SCS leads are placed along the dorsal spinal cord (SCSD), where stimulation activates large diameter afferent fibers, which indirectly activate motoneurons through reflex pathways. This leads to broad activation of flexor and extensor muscles and limited fine-tuned control of motor output. Targeting the ventral spinal cord (SCSV) may enable more direct activation of motoneuron pools, potentially improving the specificity of muscle activation; however, there is currently no established method to place leads ventrally. To address this, we evaluated the feasibility of four modified percutaneous implantation techniques to target the ventrolateral thoracolumbar spinal cord. Materials and methodsPercutaneous SCSV implantation was performed in three human cadaver torso specimens under fluoroscopic guidance. The following approaches were evaluated: sacral hiatus, transforaminal, interlaminar contralateral, and interlaminar ipsilateral. The leads in the latter 3 approaches were inserted between L1 and L5. Eighteen implants were attempted, with nine leads retained for analysis. Lead and electrode position were assessed using computed tomography (CT) with three-dimensional reconstruction, along with anatomical dissection to verify lead and electrode placement within the epidural space. ResultsSuccessful ventral epidural lead placement was achieved using all four implantation approaches. The sacral hiatus (16/16 electrodes) and transforaminal (8/8 electrodes) approaches resulted in exclusively ventrolateral placement. The interlaminar contralateral approach led to 27/32 electrodes positioned ventrolaterally and 5/32 dorsally. The interlaminar ipsilateral implantation approach led to 14/32 electrodes positioned ventrolaterally and 18/32 positioned ventromedially. ConclusionsThese findings demonstrate that ventral epidural SCS lead placement can be achieved using modified percutaneous implant techniques. The four approaches outlined here provide a clinically feasible pathway to SCSV and establishes a foundation for future clinical studies investigating SCSV for motor rehabilitation following SCI.

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Feasibility of Volumetric Analysis using Bedside Ultra-Low-Field Portable Magnetic Resonance Imaging in Patients receiving Extracorporeal Membrane Oxygenation

Stockbridge, M. D.; Faria, A. V.; Neal, V.; Diaz-Carr, I.; Soule, Z.; Ahmad, Y. B.; Khanduja, S.; Whitman, G.; Hillis, A. E.; Cho, S.-M.

2026-04-13 neurology 10.64898/2026.04.09.26350481 medRxiv
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The SAFE MRI ECMO (NCT05469139) study established the safety of ultra-low-field 64mT MRI in patients receiving extracorporeal membrane oxygenation (ECMO) in the setting of intensive care and demonstrated that these images were highly sensitive in detecting acquired brain injuries. This retrospective analysis of prospectively collected observational data sought to expand on these findings in light of the crucial need for neurological monitoring while patients receive ECMO by evaluating the feasibility of volumetric analyses derived from ultra-low-field MR images. T2-weighted scans from thirty patients who received ultra-low-field MRI while undergoing ECMO at Johns Hopkins Hospital were analyzed using a volumetric pipeline to determine whole brain volume and volumes of total grey matter, total white matter, subcortical grey matter, ventricles, left hemisphere, right hemisphere, telencephalon, left and right lateral ventricles, the total intracranial volume, and the cerebellum. Segmented brain volumes in patients undergoing ECMO were comparable to measurements obtained using conventional field and ultra-low-field MRI in the absence of ECMO instrumentation. The subgroup analysis demonstrated subtle volumetric differences between patients supported with venoarterial ECMO and those receiving venovenous ECMO. These data provide the first evidence that ultra-low-field MRI provides volumetric measurements comparable to conventional field-strength MRI, even in the presence of ECMO circuitry, supporting its feasibility for neuroimaging in critically ill patients.

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Auxiliary Clinical Prompt Integration into Vision-Language Prompt SAM for Brain Tumor Segmentation

Hakata, Y.; Oikawa, M.; Fujisawa, S.

2026-04-17 health informatics 10.64898/2026.04.15.26351001 medRxiv
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Background. Adult diffuse glioma is a representative class of primary brain tumors for which accurate MRI-based tumor segmentation is indispensable for treatment planning. Conventional automated segmentation methods have relied primarily on image information and spatial prompts, and auxiliary clinical information that is routinely acquired in clinical practice has not been sufficiently exploited as an input. Objective. Building on a dual-prompt-driven Segment Anything Model (SAM) extension framework that fuses visual and language reference prompts, we propose a method that integrates patient demographics, unsupervised molecular cluster variables derived from TCGA high-throughput profiling, and histopathological parameters as learnable prompt embeddings, and we evaluate its effect on the accuracy of lower-grade glioma (LGG) MRI segmentation. Methods. An auxiliary prompt encoder converts clinical metadata into high-dimensional embeddings that are fused with the prompt representations of Segment Anything Model (SAM) ViT-B through a cross-attention fusion mechanism. The TCGA-LGG MRI Segmentation dataset (Kaggle release by Buda et al.; n = 110 patients; WHO grade II-III) was split at the patient level (train/val/test = 71/17/22) using three different random seeds, and the three slices with the largest tumor area were extracted from each patient. To avoid pseudo-replication arising from multiple slices per patient and repeated measurements across seeds, our primary analysis aggregated Dice and 95th-percentile Hausdorff distance (HD95) to the patient x seed unit (n = 66); secondary analyses at the unique-patient level (n = 22) and at the per-slice level (n = 198) are also reported. Pairwise comparisons used paired t-tests with Bonferroni correction (k = 3) and Wilcoxon signed-rank tests, and a permutation test (K = 30) served as an auxiliary check of effective use of the auxiliary information. Results. At the patient x seed level (n = 66), Proposed (full clinical) achieved a Dice gain of +0.287 over the zero-shot SAM ViT-B baseline (paired-t p = 4.2 x 10^-15, Cohen's d_z = +1.25, Bonferroni-corrected p << 0.001; Wilcoxon p = 2.0 x 10^-10), and HD95 improved from 218.2 to 64.6. Because zero-shot SAM is not designed for domain-specific medical segmentation, the large absolute HD95 gap largely reflects the expected domain gap rather than a competitive baseline. The additional contribution of the full clinical configuration over the demographics-only configuration was Dice = +0.023 (paired-t p = 0.057, Bonferroni-corrected p = 0.172), which did not reach statistical significance at the patient level and is reported as a directional trend. The permutation test (K = 30, seed 2025) yielded real-metadata Dice = 0.819 versus a shuffled-metadata mean of 0.773, giving an empirical p = 0.032 = 1/(K + 1), which is at the resolution limit of this test and should therefore be interpreted as preliminary evidence. Conclusions. Integrating auxiliary clinical information as multimodal prompts produced a large improvement over the zero-shot SAM baseline on this LGG cohort. More importantly, a robustness analysis showed that Proposed (full clinical) outperformed the trained Base (no auxiliary information) under all tested spatial-prompt conditions, including perfect centroid (+0.014), and that the advantage was most pronounced in the prompt-free regime (+0.231, p = 0.039), where the base model collapsed but the proposed model maintained meaningful segmentation by leveraging clinical metadata alone. The additional contribution of molecular and histopathological information beyond demographics was not statistically resolved at the patient level (+0.023, n.s.). Establishing clinical utility will require external validation on larger multi-center cohorts and direct comparisons with established segmentation methods. Keywords: brain tumor segmentation; Segment Anything Model (SAM); vision-language prompt-driven segmentation; auxiliary clinical prompts; multimodal learning; TCGA-LGG; deep learning

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A Replicable NeuroMark Template for Whole-Brain SPECT Reveals Data-Driven Perfusion Networks and Their Alterations in Schizophrenia

Harikumar, A.; Baker, B.; Amen, D.; Keator, D.; Calhoun, V. D.

2026-04-12 psychiatry and clinical psychology 10.64898/2026.04.08.26349985 medRxiv
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Single photon emission computed tomography (SPECT) is a highly specialized imaging modality that enables measurement of regional cerebral perfusion and, in particular, resting cerebral blood flow (rCBF). Recent technological advances have improved SPECT quantification and reliability, making it increasingly useful for studying rCBF abnormalities and perfusion network alterations in psychiatric and neurological disorders. To characterize large scale functional organization in SPECT data, data driven decomposition methods such as independent component analysis (ICA) have been used to extract covarying perfusion patterns that map onto interpretable brain networks. Blind ICA provides a data driven approach to estimate these networks without strong prior assumptions. More recently, a hybrid approach that leverages spatial priors to guide a spatially constrained ICA (sc ICA) have been used to fully automate the ICA analysis while also providing participant-specific network estimates. While this has been reliably demonstrated in fMRI with the NeuroMark template, there is currently no comparable SPECT template. A SPECT template would enable automatic estimation of functional SPECT networks with participant-specific expressions that correspond across participants and studies. The current study introduces a new replicable NeuroMark SPECT template for estimating canonical perfusion covariance patterns (networks). We first identify replicable SPECT networks using blind ICA applied to two large sample SPECT datasets. We then demonstrate the use of the resulting template by applying sc-ICA to an independent schizophrenia dataset. In sum, this work presents and shares the first NeuroMark SPECT template and demonstrating its utility in an independent cohort, providing a scalable and robust framework for network-based analyses.

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The single item physical activity (SIPA) measure: a major role for global surveillance and community program evaluation

Bauman, A.; Owen, K.; Messing, S.; Macdonald, H.; Nettlefold, L.; Richards, J.; Vandelanotte, C.; Chen, I.-H.; Cullen, B.; van Buskirk, J.; van Itallie, A.; Coletta, G.; O'Halloran, P.; Randle, E.; Nicholson, M.; Staley, K.; McKay, H. A.

2026-04-16 public and global health 10.64898/2026.04.14.26350895 medRxiv
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Military aviation training noise remains understudied despite its widespread impacts across urban, rural, and wilderness areas. The predominance of low-frequency noise and repetitive training can create pervasive noise pollution, yet past research often fails to capture the full range of health and quality-of-life effects. This study analyzed two complaint datasets related to Whidbey Island Naval Air Station noise: U.S. Navy records (2017-2020) and Quiet Skies Over San Juan County data (2021-2023). We analyzed and mapped sentiment intensity from noise complaints relative to modeled annual noise exposure, developed a typology to classify impacts, and modeled the environmental and operational factors influencing complaints. Findings revealed widespread negative sentiment and anger, often beyond the bounds of estimated noise contours, suggesting that annual cumulative noise models inadequately estimate community impacts. Complaints consistently highlighted sleep disturbance, hearing and health concerns, and compromised home environments due to shaking, vibration, and disruption of daily life. Residents also reported significant social, recreational, and work disruptions, along with feelings of fear, helplessness, and concern for children's well-being. The number of complaints were strongly associated with training schedules, with late-night sessions being the strongest predictor. A delayed response pattern suggests residents reach a frustration threshold before filing complaints. Overall, our findings demonstrate persistent negative sentiment and diverse impacts from military aviation noise. Results highlight the need for improved noise metrics, modeling and operational adjustments to mitigate the most disruptive effects.

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Probabilistic Cerebral Blood Flow Trajectories Across the Adult Lifespan Using Quantitative Water PET

Johansson, J.; Palonen, S.; Egorova, K.; Tuisku, J.; Harju, H.; Kärpijoki, H.; Maaniitty, T.; Saraste, A.; Saari, T.; Tuomola, N.; Rinne, J.; Nuutila, P.; Latva-Rasku, A.; Virtanen, K. A.; Knuuti, J.; Nummenmaa, L.

2026-04-11 radiology and imaging 10.64898/2026.04.08.26350393 medRxiv
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BackgroundQuantitative cerebral blood flow (CBF) measured with [15O]water positron emission tomography (PET) is the reference standard for quantifying brain perfusion. However, clinical interpretation of individual CBF measurements is limited by the absence of large normative datasets accounting for physiological variability across the adult lifespan. Long-axial field-of-view PET enables high-sensitivity quantitative [15O]water perfusion imaging without arterial blood sampling, allowing normative characterization of cerebral perfusion at unprecedented scale. The aim of this study was to establish normative and covariate-adjusted models of cerebral blood flow across the adult lifespan using total-body [15O]water PET. MethodsQuantitative CBF measurements were obtained in 302 neurologically healthy adults (age 21-86 years) using total-body [15O]water PET. Linear mixed-effects models were used to evaluate the effects of age, sex, body mass index (BMI), and blood hemoglobin concentration on CBF and to generate normative prediction models across the adult lifespan. Between-subject and within-subject variability were estimated from repeated scans in a subset of participants (n=51). ResultsMean grey matter CBF was 46.1 mL/(min*dL), with substantial inter-individual variability but high within-subject reproducibility (intraclass correlation coefficients 0.78-0.89). Advancing age was associated with a decline in CBF of approximately 7% per decade (p_FDR < 10-12). Higher BMI was associated with lower CBF (approximately -6% per 10 kg/m2; p_FDR < 0.01). Women exhibited higher CBF than men (approximately 7.5%), but this difference was largely explained by lower blood hemoglobin concentration in women. Covariate-adjusted models were used to generate normative predictions and prediction intervals describing expected CBF across adulthood. ConclusionThis study establishes a normative database of quantitative cerebral blood flow across the adult lifespan using high-sensitivity [15O]water PET. Age, BMI, and hemoglobin are major determinants of inter-individual variability in CBF. The resulting generative models provide a quantitative reference framework for interpreting cerebral perfusion measurements and may enable automated detection of abnormal brain perfusion in clinical PET imaging.

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A multimodal AI model for modeling the genetic risk factor of Alzeihmer's disease

Nguyen, T. M.; Woods, C.; Liu, J.; Wang, C.; Lin, A.-L.; Cheng, J.

2026-04-15 health informatics 10.64898/2026.04.13.26350803 medRxiv
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The apolipoprotein E {varepsilon}4 (APOE4) allele is the strongest genetic risk factor for late-onset Alzheimer's disease (AD), the most common form of dementia. APOE4 carriers exhibit cerebrovascular and metabolic dysfunction, structural brain alterations, and gut microbiome changes decades before the onset of clinical symptoms. A better understanding of the early manifestation of these physiological changes is critical for the development of timely AD interventions and risk reduction protocols. Multimodal datasets encompassing a wide range of APOE4- and AD-associated biomarkers provide a valuable opportunity to gain insight into the APOE4 phenotype; however, these datasets often present analytical challenges due to small sample sizes and high heterogeneity. Here, we propose a two-stage multimodal AI model (APOEFormer) that integrates blood metabolites, brain vascular and structural MRI, microbiome profiles, and other clinical and demographic data to predict APOE4 allele status. In the first stage, modality-specific encoders are used to generate initial representations of input data modalities, which are aligned in a shared latent space via self-supervised contrastive learning during pretraining. This objective encourages the learning of informative and consistent representations across modalities by leveraging cross-modality relationships. In the second stage, the pretrained representations are used as inputs to a multimodal transformer that integrates information across modalities to predict a key AD risk genetic variant (APOE4). Across 10 independent experimental runs with different train-validation-test splits, APOEFormer predicts whether an individual carries an APOE4 allele with an average accuracy of 75%, demonstrating robust performance under limited sample sizes. Post hoc perturbation analysis of the predictive model revealed valuable insights into the driving components of the APOE4 phenotype, including key blood biomarkers and brain regions strongly associated with APOE4.

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Variation in Haemostasis and VTE Prophylaxis in Elective Adult Cranial Neurosurgery: A Global Survey of Perioperative Practice

Pandit, A. S.; Chaudri, T.; Chaudri, Z.; Vasilica, A. M.; Dhaliwal, J.; Sayar, Z.; Cohen, H.; Westwood, J. P.; Toma, A. K.

2026-04-16 surgery 10.64898/2026.04.14.26350905 medRxiv
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Background Venous thromboembolism (VTE) remains a major cause of perioperative morbidity in cranial neurosurgery, yet clinical practice varies widely, and formal guidelines are inconsistent. Understanding internationally sampled neurosurgical practice is essential for informing consensus and future trials. Methods An international, 2-stage cross-sectional, internet-based survey was conducted. Practising neurosurgeons performing elective adult cranial surgery were eligible. Descriptive statistics were used to summarise practice. Responses covered patterns of pre-operative haemostasis decision making, use and timing of mechanical and/or chemical prophylaxis, use of perioperative imaging prior to anticoagulation, and frequency of clinical assessment for VTE. Associations with geographical income status, subspecialty, and years post-certification were statistically tested. Practice heterogeneity was quantified and contextual influence was summarised using mean effect sizes across stratifying variables in order to determine domains of true equipoise. Results Of 585 responses, 456 (78%) met criteria for inclusion: representing 322 units across 78 countries (71% high-income). Thirteen per cent reported no departmental VTE plan; 23% followed no guidelines and 12% used multiple. Routine pre-operative testing almost universally included haemoglobin/platelets/haematocrit, with fibrinogen more common in high-income settings. Compared with high-income country respondents, low- and middle-income respondents reported higher haemoglobin transfusion thresholds (>90 g/dL; p<0.001) and shorter antiplatelet interruption (p[&le;]0.03), and less frequent outpatient VTE assessment (p<0.001). Mechanical prophylaxis was common (TEDs 81%, IPC 62%), typically started pre- or intra-operatively. Among those completing the chemoprophylaxis section (n=310), 57% required a CT or MRI scan before LMWH which was then initiated on average 31.4 hours after surgery. 1% of respondents did not routinely use LMWH. Many clinical decisions demonstrated statistical equipoise ie. high heterogeneity with low contextual influence. Conclusion Peri-operative haemostasis and VTE prophylaxis practices in adult elective cranial neurosurgery vary substantially worldwide, with some decisions reflecting geographical or socioeconomic differences and many others reflecting true clinical equipoise rather than contextual determinants. By mapping contemporary real-world practice across diverse health-system contexts, this study provides a necessary empirical foundation for rational trial design and future guideline development.