Back

Machine learning and data-driven inverse modeling of metabolomics unveil key process of active aging

Li, J.; brenner, m.; pierides, i.; wessner, b.; franzke, b.; strasser, e. m.; Waldherr, S.; wagner, k. h.; Weckwerth, W.

2024-08-28 systems biology
10.1101/2024.08.27.609825 bioRxiv
Show abstract

Physical inactivity and a weak fitness status have become a global health concern. Metabolomics, as an integrative systematic approach, might link to individuals fitness at the molecular level. In this study, we performed blood samples metabolomics analysis of a cohort of elderly people with different treatments. By defining two groups of fitness and corresponding metabolites profiles, we tested several machine learning classification approaches to identify key metabolite biomarkers, which showed robustly aspartate as a dominant negative marker of fitness. Following, the metabolomics data of the two groups were analyzed by a novel approach for metabolic network interaction termed COVRECON. Where we identified the enzyme AST as the most important metabolic regulation between the fit and the less fit groups. Routine blood tests in these two cohorts validated significant differences in AST and ALT. In summary, we combine machine learning classification and COVRECON to identify metabolomics biomarkers and causal processes for fitness of elderly people.

Matching journals

The top 5 journals account for 50% of the predicted probability mass.

1
Metabolomics
14 papers in training set
Top 0.1%
23.2%
2
Metabolites
53 papers in training set
Top 0.1%
12.4%
3
Scientific Reports
3612 papers in training set
Top 6%
8.2%
4
Bioinformatics
1204 papers in training set
Top 4%
5.7%
5
Computational and Structural Biotechnology Journal
242 papers in training set
Top 1%
3.3%
50% of probability mass above
6
iScience
1154 papers in training set
Top 8%
2.9%
7
Experimental Gerontology
12 papers in training set
Top 0.1%
2.7%
8
The Journals of Gerontology, Series A: Biological Sciences and Medical Sciences
26 papers in training set
Top 0.2%
2.5%
9
Biogerontology
10 papers in training set
Top 0.1%
2.5%
10
npj Systems Biology and Applications
125 papers in training set
Top 0.8%
2.2%
11
Bioinformatics Advances
203 papers in training set
Top 2%
2.2%
12
eLife
5828 papers in training set
Top 43%
2.2%
13
Briefings in Bioinformatics
354 papers in training set
Top 5%
1.6%
14
PLOS Computational Biology
1863 papers in training set
Top 15%
1.6%
15
Heliyon
152 papers in training set
Top 4%
1.4%
16
Aging
75 papers in training set
Top 1%
1.4%
17
Frontiers in Aging Neuroscience
74 papers in training set
Top 1%
1.2%
18
International Journal of Molecular Sciences
494 papers in training set
Top 10%
1.2%
19
BMC Bioinformatics
457 papers in training set
Top 5%
1.2%
20
PLOS ONE
5266 papers in training set
Top 57%
1.1%
21
Imaging Neuroscience
282 papers in training set
Top 4%
1.0%
22
Frontiers in Molecular Biosciences
102 papers in training set
Top 2%
0.9%
23
Chemosphere
17 papers in training set
Top 0.3%
0.6%
24
GeroScience
109 papers in training set
Top 2%
0.6%
25
Communications Biology
993 papers in training set
Top 33%
0.6%
26
Nature Communications
5641 papers in training set
Top 58%
0.6%
27
Frontiers in Physiology
106 papers in training set
Top 4%
0.5%
28
Molecular Omics
23 papers in training set
Top 0.6%
0.5%
29
FASEB BioAdvances
18 papers in training set
Top 0.6%
0.5%
30
Frontiers in Genetics
230 papers in training set
Top 7%
0.5%