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Common genetic variant of GC associated with vitamin D deficiency in a Chinese population in the Netherlands

Man, P. W.; Böhringer, S.; Houwink, E. J. F.; Lin, W.; Numans, M. E.; Lips, P.; Middelkoop, B.

2022-08-10 genetic and genomic medicine
10.1101/2022.08.08.22278561 medRxiv
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BackgroundGenome-wide association studies among European populations have identified four single nucleotide polymorphisms (SNPs) in genes involved in vitamin D transport and metabolism affecting 25-hydroxyvitamin D [25(OH)D] concentration: rs2282679 in GC, rs6013897 near CYP24A1, rs10741657 near CYP2R1, and rs12785878 near DHCR7. It is, however, unknown whether the association with 25(OH)D can also be observed in a Chinese population living in the Netherlands. MethodsObservational study. Analyses were performed under an additive (univariate and multivariate) and genotypic model using logistic regression. ResultsThe C allele (minor allele frequency 0.28) of rs2282679 in GC was associated with vitamin D deficiency as defined by the Health Council of the Netherlands: 25(OH)D <30 nmol/l (or <50 nmol/l for persons aged [&ge;]70 years). Univariate and multivariate odds ratios, 1.52 (95% CI 1.03, 2.24) and 1.57 (95% CI 1.04, 2.39), respectively, were not significant after Bonferroni correction. However, after extending the data by a meta-analysis, a significant association between C allele of rs2282679 and vitamin D deficiency (< 50 nmol/l) was observed (odds ratio 1.33; 95% CI 1.16, 1.52). ConclusionOur findings suggest that, apart from sun exposure, lifestyle, and environmental factors, a common variant of GC may be associated with vitamin D deficiency.

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