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Virulence

Informa UK Limited

Preprints posted in the last 30 days, ranked by how well they match Virulence's content profile, based on 25 papers previously published here. The average preprint has a 0.02% match score for this journal, so anything above that is already an above-average fit.

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Neurotropic strains of Listeria monocytogenes preferentially invade enteric glial cells

Donkin, R. W.; Benda, C.; Krick, K. E.; Amelunke, B.; Cho, J.; Sams, E. L.; Albrecht, T. M.; Pena Rosado, A.; Senay, T. E.; Puderbaugh, A. C.; Nowacki, J. S.; D'Orazio, S. E. F.

2026-08-07 microbiology 10.64898/2026.08.03.742483 medRxiv
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Certain strains of the facultative intracellular bacterial pathogen Listeria monocytogenes are thought to invade cranial nerves in the gut and disseminate directly to the brainstem to cause rhombencephalitis in both humans and ruminants. Bacteria with actin tails were previously observed within neurons of naturally infected sheep, but the mechanism for how these neurotropic strains access the nervous system has not been well characterized. Using a foodborne mouse model of listeriosis, we show here that bypassing the gut phase of infection prevents colonization of the brain, confirming that invasion of the nervous system happens in the intestinal tract. L. monocytogenes did not efficiently invade neuronal cell lines, although they could replicate exponentially in the cytosol and form actin tails. Instead, the neurotropic strains displayed a preferential ability to invade enteric glial cells, a specialized subset of glia that support neurons and are critical for intestinal homeostasis. Using an in vitro co-culture system, we demonstrated that neurotropic L. monocytogenes could readily invade enteric glial cells and use ActA-mediated actin-based motility to spread to adjacent neurons. These results suggest that invasion of enteric glial cells is a novel virulence strategy that can promote brainstem infection following foodborne transmission of L. monocytogenes. IMPORTANCEThis study provides further evidence for dissemination of neurotropic strains of L. monocytogenes from the gut directly to the brain via axonal migration using foodborne mouse model of listeriosis. It is the first report showing that enteric glial cells, a specialized subset of cells in the gut that support intestinal neurons, are susceptible to pathogenic bacterial infection.

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15-deoxy-Δ12,14-prostaglandin J2 limits Salmonella infection through regulation of host TLR4 signaling and inflammasome activation

Magalhaes, N. S.; Feofanova, V.; Nguyen, V.; Pauer, H.; Ferreira, L.; Chianca, G. C.; Antunes, C.

2026-08-25 microbiology 10.64898/2026.08.24.746850 medRxiv
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Enteric infections caused by Salmonella enterica remain a major global health concern and are increasingly associated with antimicrobial resistance. Therefore, new strategies to combat this important pathogen are needed. The interactions between S. enterica and the human host have been the subject of intense investigation over the last several decades, yet new findings continue to emerge. We previously showed that 15-deoxy-{Delta}12,14-prostaglandin J2 (15d-PGJ2) reduces Salmonella colonization of macrophages, but the mechanisms underlying this protective effect were still unknown. Here, we demonstrate that 15d-PGJ2 limits Salmonella infection by suppressing TLR4 signaling and inflammasome activation. Treatment with 15d-PGJ2 reduced TLR4 expression, NF-{kappa}B activation, iNOS, COX-2, nitric oxide production, IL-1{beta} release, and inflammasome-related targets, including NLRP3 and caspase-1 activity, while only partially reversing macrophage polarization. Combined treatment with the TLR4 antagonist TAK-242 further reduced bacterial colonization of and IL-1{beta} release by macrophages, supporting the involvement of TLR4 signaling in the effects of 15d-PGJ2. During mouse infections, 15d-PGJ2 reduced bacterial burdens in a tissue-dependent manner. Together, these findings demonstrate that 15d-PGJ2 limits Salmonella infection through selective modulation of TLR4 signaling and inflammasome activation.

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Core genome MLST reveals genetic and BafA-associated phenotypic diversities in Bartonella henselae strains

Nomura, Y.; Wada, A.; Motooka, D.; Suzuki, M.; Kabeya, H.; Maruyama, S.; Sato, S.; Tsukamoto, K.

2026-08-27 microbiology 10.64898/2026.08.27.747447 medRxiv
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Bartonella henselae is a zoonotic pathogen associated with cat-scratch disease. Although multilocus sequence typing (MLST) has been used for strain classification, its resolution for distinguishing between B. henselae isolates remains limited. We herein developed a B. henselae-specific core genome MLST (cgMLST) scheme based on whole-genome sequencing data and examined the genetic and phenotypic diversities of 80 strains derived from cats, humans, mongooses, and masked palm civets. Using the conventional MLST scheme, the 80 strains were classified into nine sequence types (STs), while cgMLST subdivided them into 72 cgSTs, demonstrating a marked improvement in discriminatory power. The cgMLST scheme comprised 1,183 core genes and showed high applicability across the 80 strains. A phylogenetic analysis revealed that ST1, which has been associated with cat-scratch disease, was further subdivided into three major clusters and two singletons, indicating high genetic heterogeneity within this ST. We also found that the bafA subtypes clustered in a manner that was largely consistent with the cgMLST-based phylogenetic structure, suggesting a close relationship between bafA variations and the genomic background of B. henselae strains. In a human umbilical vein endothelial cell proliferation assay, strains belonging to distinct cgSTs exhibited strain-dependent differences in proliferative capacity, which were associated with the bafA subtype classification. Some strains induced focal cell fragmentation and a reduced cell density at a high multiplicity of infection, indicating strain-dependent differences in endothelial cell injury. Collectively, the present results establish a high-resolution cgMLST framework for B. henselae and demonstrate that genetically distinct strains have diverse endothelial cell phenotypes.

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Euo is Essential for Transcriptional Priming of Chlamydia trachomatis Elementary Bodies to Facilitate Secondary Infection.

Appa, C.; Grieshaber, N.; Monahan, C.; Blum, C. D.; Omsland, A.; Grieshaber, S. S.

2026-08-26 microbiology 10.64898/2026.08.22.746413 medRxiv
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The phylum Chlamydiota comprises obligate intracellular bacteria characterized by a highly conserved, biphasic developmental cycle. This cycle involves the transition between the infectious, metabolically quiescent elementary body (EB) and the non-infectious, replicative reticulate body (RB). While the morphological transitions of the developmental cycle are well-documented, the regulatory mechanisms governing these phenotypic shifts remain poorly understood. A primary candidate for this regulation is Euo, a conserved, phylum-specific helix-loop-helix transcription factor hypothesized to repress late-cycle genes and prevent premature differentiation. In this study, we employed CRISPR interference (CRISPRi) to knockdown euo expression in Chlamydia trachomatis to further elucidate its role in developmental regulation. Unexpectedly, euo knockdown did not significantly disrupt the primary developmental cycle; progression through RB replication, the formation of intermediate bodies (IBs), and the kinetics of late-gene expression remained largely comparable to wild-type. However, we observed a significant reduction in the production of infectious progeny. Detailed analysis revealed that while EBs were still produced and capable of entering host cells after knock down of euo, these EBs exhibited dysregulated gene expression during the germination phase of a new infection cycle. Consequently, these bacteria failed to establish a productive secondary infection. These results suggest that rather than acting as a developmental switch for differentiation during the initial infection, Euo is essential for the proper programming of EBs, ensuring transcriptional competence upon re-infection of a host cell.

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Impact of cathelicidin cleavage by SpeB on Streptococcus pyogenes CovRS signaling

Guerra, S.; Qu, C.; LaRock, C.

2026-08-12 microbiology 10.64898/2026.08.12.744433 medRxiv
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Cathelicidins are a class of antimicrobial peptides (AMPs) that are part of the first line of defense of the innate immune system. While cathelicidin-derived peptides such as LL-37 can be directly bactericidal, Streptococcus pyogenes (Spy; Group A Streptococcus) is highly resistant to killing. Furthermore, Spy detects LL-37 through the CovRS two-component system to regulate its virulence factors. One effect of this signaling is the repression of expression of the bacterial protease SpeB. Prior work has also shown that SpeB, along with other bacterial proteases can cleave LL-37. However, it is unclear if SpeB cleavage of LL-37 impacts antimicrobial function and CovRS signaling activity. Using a genetic approach, we show that the presence SpeB did not significantly impact the killing of Spy by LL-37 relative to other known resistance factors. Furthermore, while SpeB cleaves LL-37, CovRS maintains sensitivity to LL-37 fragments. These results indicate that SpeB cleavage of LL-37 does not negatively impact virulence factor regulation in Spy.

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Size Matters: Small Cell Variants of Coxiella burnetii Initiate Replication Early in Primary Macrophages

Sims, L. A.; GrandPre, P. A.; Reed, S. C. O.; Di Russo Case, E.

2026-08-21 microbiology 10.64898/2026.08.17.744959 medRxiv
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Coxiella burnetii alternates morphologies to survive in two niches: the external environment and a degradative intracellular compartment. The small cell variant (SCV) is adapted for environmental persistence and transmission of Q fever to ruminants and humans. The large cell variant (LCV) is intracellular, and despite not being a major source of transmission, is infectious in vitro. When modeling infection, researchers typically apply a mixed population of these cell types as inocula. As this practice does not mimic natural infection, it may confound our understanding of early Q fever infection events. We separated SCV and LCV by density gradient centrifugation and compared their replication in primary murine macrophages and a fibroblast cell line. SCV inocula replicated more efficiently than LCVs in both host cell types. LCV replication was delayed for four days in macrophages compared with SCV inocula, which had completed logarithmic growth by that time point. We found no difference in pathogenic vacuole size, but there was a modest difference in their respective bacterial burdens. Interestingly, IL-6 and CXCL2 secretion was significantly elevated in LCV-infected macrophages as compared to SCV at 24 hours, suggesting a difference in the host response to each. This is the first study to demonstrate that C. burnetii developmental status influences the progression of infection.

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Myeloperoxidase (MPO) exacerbates dengue-associated liver injury and contributes to disease pathogenesis in mouse models

Victorio, C. B. L.; Teo, A.; Gupta, S.; Ganasarajah, A.; Ong, J. L.; SK, J.; Rabelo, K.; Alves, L. L.; Basilio-de-Oliveira, C. A.; Basilio-de-Oliveira, R. P.; Chia, P. Y.; Kuruppu, H.; Karunananda, M.; Idampitiya, D.; Wijewickrama, A.; Jeewandara, C.; Malavige, G. N.; Yeo, T. W.; Chacko, A.-M.

2026-08-27 pathology 10.64898/2026.08.23.746568 medRxiv
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Severe dengue can damage the liver through unestablished mechanisms. We investigated the role of myeloperoxidase (MPO), a neutrophil enzyme, in dengue through patients, fatal liver samples, and mouse infection models. Observations from two independent clinical cohorts revealed elevated plasma MPO levels in dengue and, in one cohort, MPO was further linked to liver injury markers during the critical phase of disease, whereas livers from dengue fatal cases revealed MPO build-up in the vicinity of CD177+ activated neutrophils. In mice, dengue led to MPO overexpression, oxidative damage, and broad activation of innate and systemic inflammatory pathways in livers. Blocking MPO activity alleviated these and improved survival in one model and delayed disease progression without preventing death in another. These findings establish MPO as a functional mediator of severe dengue-associated liver injury and inflammation, which warrants further preclinical investigation into its hepatic pathogenic mechanism and its validity as target for therapeutic intervention.

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Novel, highly divergent clones in Listeria monocytogenes serotype 4b in North America: Sublineages 782 and 1039, members of the hypervirulent clonal complex 2

Brown, P. E.; Kucerova, Z.; Perot, P.; Sadat, A.; Jackson, J. H.; Elhanafi, D.; Gadin, E.; Lecuit, M.; Kathariou, S.

2026-08-24 microbiology 10.64898/2026.08.21.744909 medRxiv
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Listeria monocytogenes is a Gram-positive bacterial foodborne pathogen responsible for the severe illness listeriosis. Of the 14 L. monocytogenes serotypes, serotype 4b is a major contributor to human listeriosis and encompasses all four leading hypervirulent clonal complexes (CCs), including the ancient, ubiquitous CC2. CC2 is globally dominated by sublineage (SL) 2, responsible for most human CC2-associated cases. Here we describe two other CC2 SLs, SLs 782 and 1039. These SLs are newly recognized, having been reported only since 2002, and to date are encountered exclusively in North America. Phylogenetic analysis revealed that they are strikingly divergent from each other as well as from SL2. SL782 and SL1039 have been implicated in human listeriosis and have also been repeatedly isolated from surface water and wildlife in North America, with several of these environmental strains exhibiting high genomic similarity ([≤]7 core genome allelic mismatches) to strains from human listeriosis. They share an unusual resistance profile towards a panel of Listeria wide-host-range-phages and exhibit several distinct lineage-specific traits. Specifically, SL782 universally lacks a gene otherwise unique to and conserved in serotype 4b and harbors the Listeria pathogenicity island LIPI-4, while SL1039 harbors LIPI-3 and is almost always resistant to tetracycline, harboring the novel Tn916-like transposon Tn916.1039. These and other traits may have driven clonal emergence of SL782 and SL1039, potentially via adaptations in natural ecosystems.

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Confocal and Transmission electron microscopy imaging of Orientia tsutsugamushi

Rana, M.; Mitra, S.; Hanumanthappa, M. K.; Sharma, N.; Biswal, M.

2026-08-24 microbiology 10.64898/2026.08.24.746599 medRxiv
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Scrub typhus, caused by Orientia tsutsugamushi, is an obligate intracellular gram-negative pathogen that remains a cause of acute febrile illness in India. Culture isolation of Orientia tsutsugamushi clinical isolates is infrequent because it is technically more challenging than PCR-based molecular identification. In this report, we describe the culture isolation of Orientia from the whole blood of a 64-year-old farmer with acute febrile illness. Whole blood was inoculated onto an 80% confluent L929 cell line. Real-time PCR targeting the 47-kDa and 56-kDa genes, combined with Sanger sequencing, confirmed the isolate. Transmission electron microscopy of infected L929 cells revealed multiple oval-shaped bacteria within the host cytoplasm. Confocal microscopy demonstrated progressive accumulation of CFSE-labelled bacteria within infected cells over time. These findings support the successful isolation and visualization of a blood-derived O. tsutsugamushi isolate and provide a platform for downstream assays of host-pathogen interactions, antimicrobial susceptibility testing, and vaccine development.

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Antifungal Resistance and Adhesin-Mediated Phenotypic Plasticity Among Genomically Diverse Candida auris Clinical Isolates

Wang, T.; Ma, T.; Zhou, C.; Gonzalez Martinez, R.; Putnam, N. E.; Johnson, J. K.; Jabra-Rizk, M. A.

2026-08-31 microbiology 10.64898/2026.08.26.747207 medRxiv
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Candida auris (currently Candidozyma auris) is an emerging fungal pathogen responsible for dramatic global increase in invasive candidiasis with high mortality. Most concerning, C. auris has a high propensity to colonize patients and persist and develop multidrug resistance to main classes of antifungals. In this study, we investigated the genetic and phenotypic diversity and resistance mechanisms of C. auris clinical isolates recovered from hospitalized infected patients. A total of 53 isolates from 38 unique patients were recovered from various clinical sources and evaluated for susceptibility to routine antifungal drugs. Whole genome sequencing (WGS) and single nucleotide polymorphism (SNP) analysis were performed to generate a phylogenetic network to infer population structure and identify mutations associated with drug resistance development. Isolates were also phenotypically evaluated for ability to form biofilms and aggregate, and cell wall adhesins gene expression studies were performed to provide mechanistic insights into C. auris phenotypic plasticity. Except for one clade III isolate, all isolates belonged to clade I and all were resistant to fluconazole with incidence of resistance to amphotericin B, echinocandins or both. Non-synonymous SNPs were found in genes associated with antifungal resistance including ERG11, TAC1B, CDR1 and FKS1. Phenotypically, isolates varied in their ability to form biofilm and aggregate which correlated with expression of the Scf1 and Als4112 cell wall adhesins genes highlighting C. auris phenotypic plasticity in circulating clinical strains. These findings underscore the growing clinical threat posed by C. auris and reinforce the need for optimized surveillance and treatment strategies for controlling its spread.

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Effect of Temperature on Gene Expression of Escherichia marmotae

Oladipo, P. M.; Jomaa, A.; Zhang, X.; Withey, J. H.; Ram, J. L.

2026-08-28 genomics 10.64898/2026.08.25.747177 medRxiv
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Increased temperature is one of the first environmental cues encountered by bacteria upon entering a mammalian host. Here, we investigated the effects of temperature on the transcriptome and proteome of Escherichia marmotae and E. coli. Previous studies demonstrated that temperature affects motility in E. marmotae; therefore, we examined how temperature alters gene expression at 37 {degrees}C versus 28 {degrees}C and whether this response is conserved in E. coli. Strains were grown under static conditions at both temperatures, and gene expression and protein abundance were assessed by RNA transcriptome analysis and global proteomics. Temperature altered the expression of 111 genes (2.7%) in E. marmotae and 99 genes (2.5%) in E. coli (adjusted p < 0.05, [&ge;]2-fold change), with changes concentrated within specific functional pathways. In E. marmotae, flagellar and chemotaxis genes and operons involved in cellulose-dependent biofilm formation and nitrate respiration were markedly downregulated at 37 {degrees}C. In contrast, genes associated with fimbrial adhesion and immune evasion, including fimA/fimB, ompT, and prophage-associated loci, were upregulated. Proteomic analysis corroborated these trends, showing reduced flagellar and chemotaxis proteins and increased stress-adaptation and host-interaction proteins. E. coli showed a distinct response, with stronger enrichment of metabolic and amino-acid biosynthesis pathways and minimal changes in motility regulation. Together, these findings demonstrate that E. marmotae motility is temperature-dependent and may represent a mechanism for immune evasion within the host.

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The RND family efflux pump FemT contributes to lipid homeostasis in Staphylococcus aureus

Thukral, A.; Bonn Dunbar, C. M.; Halucha, J.; Schneider, J. E.; Pereira, T. R.; McCormick, J. K.; Heinrichs, D. E.; McGavin, M. J.

2026-08-11 microbiology 10.64898/2026.08.10.744025 medRxiv
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The RND efflux pump FemT encoded by SAUSA300_2213 of Staphylococcus aureus USA300 is co-transcribed with femX which has an essential role in synthesizing the Lipid II precursor of peptidoglycan. Anticipating that this arrangement reflects a critical accessory role for femT, we constructed USA300{Delta}femT to assess its function. Although growth of USA300{Delta}femT in tryptic soy broth (TSB) was not impaired, transcriptomic data revealed a mild cellular stress response, accompanied by reduced expression of ohyA and crt genes involved in fatty acid metabolism and carotenoid lipid synthesis respectively. Accordingly, USA300{Delta}femT exhibited impaired growth on exposure to saturated and unsaturated fatty acids, and exposure to subinhibitory 50 {micro}M palmitic acid promoted accumulation of reactive oxygen species, reduced respiratory activity, and altered membrane function and morphology. The transcriptome of cells grown under this condition revealed strongly attenuated expression of ohyA and crt, and several genes required for oxidative and anaerobic respiration, concomitant with strongly enhanced expression of several stress response pathways. Cellular metabolites were also profoundly altered. Finally, lipidomic analysis of USA300{Delta}femT exposed to oleic acid revealed increased incorporation of oleic acid into phosphatidylglycerol, accompanied by a significant reduction in undecaprenol C55 lipid carrier, and respiratory quinones MK-7 and MK-8. Our data are consistent with a role for FemT in maintaining cellular lipid homeostasis by promoting efflux of isoprenoid and carotenoid lipids that are prone to oxidative damage, including C55 and menaquinones that undergo cyclic reactions in peptidoglycan synthesis and electron transport. IMPORTANCEThe FemT efflux pump of S. aureus is co-expressed in an operon with femX encoding an essential enzyme needed to complete the synthesis of peptidoglycan precursor Lipid II. Although this alluded to a specific role for FemT in supporting peptidoglycan synthesis, our data are instead consistent with a general role in efflux of cellular isoprenoids and carotenoid lipids that are susceptible to oxidation during routine cellular functions. Consequently, S. aureus became strongly dependent on FemT function when exogenous host-derived fatty acids were being actively metabolized. This represents a significant advance in our understanding of the role of an RND efflux pump in supporting routine growth-related functions of S. aureus and exposes a function that could be targeted to impair S. aureus growth on exposure to host-derived fatty acids.

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Vacuolar type H+ ATPase is involved in stress responses in Leishmania mexicana by regulating the lysosomal pH

Gluenz, E.; Alagoez, C.; Wendt, A.

2026-08-21 cell biology 10.64898/2026.08.21.746154 medRxiv
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Vacuolar H+ ATPases (v-ATPases) are conserved proton pumps that support diverse biological functions through acidification of cellular organelles. The protozoan parasite Leishmania requires its v-ATPase for survival in the sand fly vector and mammalian host, but genetic mutants remain viable in vitro. To gain further insight into this conditionally lethal phenotype, we first mapped organellar localization of the v-ATPase by co-localisation imaging of fluorescently tagged v-ATPase subunits and organelle markers. The v-ATPase signal was strongest in the flagellar pocket region, consistent with enrichment in the contractile vacuole complex (CVC). To define the conditions that require a functional v-ATPase, deletion mutants were exposed to different stresses (pH, temperature, osmolality, dense culture). All tested deviations from standard culture conditions affected the mutants' growth rate, viability or both. Despite differences in phenotype severity, all stressors triggered the formation of a large autolysosome, positive for the autophagy marker protein ATG8 and the lysosomal enzyme cysteine peptidase A, indicating an arrest at the final step of autophagy. Measurements with the pH sensor pHLuorin2 showed that the luminal pH of the lysosomes was 5.6 in unperturbed promastigotes and 7.1 in v-ATPase mutants. These data support a canonical function for the Leishmania v-ATPase in lysosome acidification and autophagy, which is essential for parasite differentiation, and identify the poorly characterized Leishmania CVC as another major site of v-ATPase concentration.

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Tripartite host-parasite-virus interactions reshape chronic visceral leishmaniasis through persistent Leptomonas seymouri co-infection

Das, S.; Dey Sarkar, P.; Chhajer, R.; Biswas, S.

2026-08-26 microbiology 10.64898/2026.08.25.747179 medRxiv
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Background Visceral leishmaniasis (VL), caused by Leishmania donovani (LD), is increasingly associated with the insect-restricted trypanosomatid Leptomonas seymouri (LS), which harbours the RNA virus Leptomonas seymouri narna-like virus 1 (Lepsey NLV1). Our recent study demonstrated that LS co-infection with LD enhances survival of murine (RAW 264.7) and mammalian (THP-1) macrophages and augments LD and LS persistence compared to LD or LS mono-infection in vitro. However, the in vivo fate of LS and its viral endosymbiont during chronic VL remains poorly understood. This study investigated the long-term dynamics of parasite persistence, tissue dissemination and viral maintenance during experimental mono- and co-infection. Methods and Findings BALB/c mice were infected with LD, Lepsey NLV1-positive LS, virus-positive AG83 isolate, or LD: LS co-infections (2:1, 5:1 and 10:1) and monitored for up to seven months. Parasite burden, species composition and viral load were quantified using ITS1 qPCR, densitometry, nested RT-PCR and qRT-PCR, supported by microscopy and immunofluorescence assay. LS established productive visceral infection independently, with parasite burdens exceeding the infecting inoculum, indicating active in vivo replication. Co-infection, particularly at a 10:1 LD: LS ratio, promoted the greatest long-term parasite persistence in visceral organs. Temporal analysis revealed early predominance of LS followed by progressive recovery of LD during chronic infection. Lepsey NLV1 was detected in visceral organs and blood for at least up to five months. Morphological analyses demonstrated intracellular LS amastigote-like forms in murine macrophages and transformation of splenic parasites into promastigotes, confirming parasite viability within mammalian tissues. Conclusions These findings demonstrate sustained visceral persistence of Lepsey NLV1-positive LS in mice and identify dynamic host-parasite-virus interactions that reshape infection during chronic co-infection. This work challenges the conventional view of VL as a strictly mono-parasitic disease and highlights a previously underappreciated tripartite interaction with potential implications of LS and its virus endosymbiont for VL pathogenesis.

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Characterisation and genomic analysis of bacterial nutritional endosymbionts in Australian ticks from shotgun metagenomic sequencing

Leclerc, L.; Meltzer, J.; Vazquez-Campos, X.; Duron, O.; Amoros, J.; Burns, B. P.; Lo, N.

2026-08-13 microbiology 10.64898/2026.08.12.744556 medRxiv
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Ticks are obligate hematophagous arthropods and feed exclusively on blood. As blood is nutrient-poor, ticks rely on bacterial endosymbionts to synthesise nutrients, yet the diversity and functional roles of these symbionts in Australian ticks remain largely uncharacterised. This is critical to address as these ticks are of high medical importance in Australia. In this study, shotgun metagenomic sequencing was performed on Bothriocroton concolor, Bothriocroton hydrosauri, Haemaphysalis longicornis and Ixodes holocyclus, enabling the recovery of six complete or partial metagenome-assembled genomes (MAGs). These comprised Coxiella-like endosymbionts (CLE), a facultative Rickettsia symbiont, and two Midichloria mitochondrii strains (Ixholo1 and Ixholo2). Functional annotation of these taxon-specific symbionts revealed the absence of virulence factors and the presence of B-vitamin and/or heme biosynthesis genes, indicative of nutritional mutualism, which is essential for tick hematophagy. The CLEs additionally harbour genes of the shikimate pathway, which modulate blood feeding in ticks by regulating serotonin biosynthesis. Furthermore, functional annotation and pangenomic analysis of Midichloria spp. found evidence that the genus may encompass multiple species, as well as the retention of genes potentially associated with an intramitochondrial lifestyle in M. mitochondrii Ixholo2. Tick microbiomes are dominated by non-pathogenic microorganisms, which are often overshadowed by pathogens. These include the endosymbionts, which can influence host biology and pathogen transmission, and are fundamental for the development of diagnostic tools and taxon-specific tick biocontrols.

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A cornea-specific role for the Aspergillus fumigatus carbon catabolite repressor, CreA, in tissue penetration and infection establishment.

Wells, B. L.; Tang, S. Y.; Kamath, M. M.; Adams, E. M.; Lightfoot, J. D.; Ramakrishnan, G. S.; Zhao, C.; Fuller, K. K.

2026-08-13 microbiology 10.64898/2026.08.13.744696 medRxiv
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PurposeElucidate the influence of glucose metabolic pathways on A. fumigatus lung and corneal infection. MethodsThe A. fumigatus acuF and creA genes were deleted in an mcherry-expressing strain. The mutants were tested for alterations in radial growth, cell wall composition by fluorescence staining assays, and antifungal sensitivity through broth microdilution assays. Hyphal penetration of the strains through explanted porcine corneas was tracked by confocal microscopy using the mCherry signal. Virulence was evaluated in established models of invasive pulmonary aspergillosis (IPA) and fungal keratitis (FK) using C57BL/6J mice. ResultsDeletion of the A. fumigatus phosphoenolpyruvate carboxykinase (acuF) resulted in a dependency on exogenous glucose to support growth in vitro, but did not impact virulence in either the IPA or FK models. Loss of the carbon catabolite repressor CreA resulted in a broad dysregulation of carbon metabolic pathways and altered cell wall homeostasis. Surprisingly, whereas the{Delta} creA remained fully virulent in the lung, the mutant was unable to establish infection in the FK model. This in vivo phenotype corresponded to an inability of{Delta} creA to physically invade porcine corneal explants, which we attributed to a marked reduction in cell wall chitin content. ConclusionsGluconeogenesis is dispensable for A. fumigatus lung and corneal infection, suggesting tissue-derived glucose supports fungal growth in both environments. Loss of CreA disrupts glucose assimilation, its synthesis into chitin and, consequently, cell rigidity and hyphal invasion into the dense corneal stroma. Thus, CreA and other cell wall regulatory proteins may serve as targets for novel FK antifungals.

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Functional and evolutionary insights into the emerging tet(X4)-carrying non-O1/O139 Vibrio cholerae from retail pork

Hui, M.; Huang, X.; Li, B.; Ding, F.; Liao, X.; Lu, H.; Shi, X.; Liang, L.; Chen, K.; Li, X.; Si, H.; Xu, C.; Zeng, P.; Chen, S.; Dong, N.; Cheng, Q.

2026-08-12 microbiology 10.64898/2026.08.12.744420 medRxiv
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The tigecycline resistance gene tet(X4) is prevalent in Enterobacteriaceae, particularly in Escherichia coli. To our knowledge, no study has reported the dissemination dynamics of tet(X4) in Vibrio spp. Herein, we isolated and characterized a first tet(X4)-positive non-O1/O139 Vibrio cholerae isolate from retail pork. Genomic sequencing identified a novel tet(X4) variant in the V. cholerae chromosome, harboring a G568A nucleotide substitution that resulted in an Ala190Thr (A190T) amino acid substitution in Tet(X4). While this Tet(X4)-A190T variant conferred lower phenotypic resistance to tetracyclines (including tigecycline) than the wild-type Tet(X4), its overall catalytic efficiency against these antibiotics was paradoxically enhanced despite a reduced substrate affinity. Genomic comparisons revealed that two copies of ISCR2 flanked the variant gene, and the structure was ISCR2-hp-hp-abh-tet(X4)G568A -ISCR2, which is highly homologous to the reported E. coli plasmids carrying tet(X4). In addition, it confirmed the presence of an ISCR2-mediated circular intermediate, proving this modules capacity for horizontal transfer of the tet(X4)G568A variant. Furthermore, the ISCR2-tet(X4) genetic structure carrying the G568A substitution was integrated within a chimeric SXT/R391-like integrative and conjugative element (ICE), which is also serving as a vehicle for genetic dissemination. As per our knowledge, this is the first report on the emergence of SXT/R391-like ICE carrying tet(X4) in Vibrio strains. Our finding demonstrates that the clinically relevant tigecycline resistance gene tet(X4), previously confined mainly to Enterobacterales from humans and livestock, is now actively spreading into environmental Vibrio populations. This cross-species transfer highlights a previously underappreciated ecological and public health concern in aquatic ecosystems. ImportanceTigecycline serves as a vital last-resort antibiotic against severe multidrug-resistant bacterial infections, but its clinical efficacy is currently threatened by the rapid global dissemination of resistance genes like tet(X4). While land-based agriculture is a well-recognized reservoir for these genes, the role of aquatic ecosystems and environmental pathogens, such as V. cholerae, in harboring tet(X) determinants remains largely unexplored. In this study, we characterize a non-O1/non-O139 V. cholerae isolate from retail pork that harbors a naturally occurring, chromosomally integrated tet(X4)G568A variant. This novel variant exhibits elevated catalytic efficiency against tetracycline antibiotics. The tet(X4)G568A allele is embedded in a highly conserved structural module (ISCR2-tet(X4)-abh-hp-hp-ISCR2) flanked by two ISCR2 repeats, which is integrated into an SXT/R391-like ICE at the chromosomal prfC locus. These findings provide the first high-confidence genomic evidence of tet(X4) in V. cholerae, highlighting aquatic Vibrio species as critical environmental reservoirs for clinically significant antimicrobial resistance genes and emphasizing the urgent need for continuous genomic surveillance.

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Optimization of conidial production in the thermally dimorphic fungal pathogen Histoplasma

English, B. C.; Kalem, M. C.; Voorhies, M.; Sil, A.

2026-08-20 microbiology 10.64898/2026.08.20.745944 medRxiv
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Sporulation is an integral process in the lifecycle of many fungal pathogens, including Histoplasma, a primary human pathogen that causes respiratory infections. Histoplasma conidia, or asexual spores, are the primary infectious particle but very little is known about them, in part due to the need for Biosafety Level 3 containment and inconsistency in generating viable conidia under laboratory conditions. Here, we identify media that consistently promote Histoplasma conidiation, yielding both micro- and macroconidia, and conditions that promote high levels of germination. We show that conidiation media and duration affect the proportion of macroconidia produced, and we demonstrate that Histoplasma strains vary in their response to these conidiation parameters. Finally, imaging studies of chitin, exposed chitin, and cell wall mannoproteins show that while micro- and macroconidia have similar cell wall compositions, strain type and conidiation media variation result in qualitative differences in staining. These optimized methods for Histoplasma conidial preparations will enable more detailed investigations into this understudied aspect of the biology of an important human fungal pathogen.

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Defining the role of aerobic respiration in the metabolism and bioenergetics of Enterococcus faecalis

Paxie, O.; Nijagal, B.; Todd Rose, F. O.; Gastrell, S.; Su, S.; Saleh, A.; Grimshaw, J. W.; Rhee, K.; Strahl, H.; Cook, G. M.; Darnell, R. L.

2026-08-31 microbiology 10.64898/2026.08.30.748090 medRxiv
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Enterococcus faecalis is an opportunistic pathogen and facultative anaerobe that primarily relies on fermentative metabolism to colonize a wide range of aerobic and anaerobic environments. In the presence of exogenous heme, E. faecalis can assemble a minimal electron transport chain consisting of membrane-associated primary dehydrogenases, demethylmenaquinone, and the terminal cytochrome bd oxidase (CydAB). This respiratory chain is thought to generate a proton motive force to drive ATP synthesis via the F-type ATP synthase, thereby improving energy conservation under aerobic conditions. However, a cytosolic NADH oxidase (Nox) also consumes NADH and oxygen, potentially competing with the electron transport chain for reducing equivalents and terminal electron acceptors; but the relative physiological contributions of these two oxygen-reducing pathways remain poorly understood. To define the roles of CydAB and Nox under normoxic and hypoxic conditions, we constructed {Delta}cydAB and {Delta}nox mutants. Real-time, in situ measurements revealed {Delta}cydAB had no significant effect on oxygen utilization while in the {Delta}nox it was significantly reduced; revealing Nox as the major consumer of oxygen. Semi-untargeted metabolomic analysis further revealed oxidase-specific alterations in central metabolism with the {Delta}nox causing pronounced shifts in the ATP and NADH ratios; highlighting Nox as a key determinant of intracellular redox and energy homeostasis. Finally, single-cell fluorescence microscopy showed that membrane potential, a component of proton motive force, was substantially diminished only in the absence of both CydAB and Nox, or the F-type ATP synthase. These findings indicate that the F-type ATP synthase is a major generator of proton motive force, even upon aerobic growth, and demonstrate a complementary role for the electron transport chain and Nox in the bioenergetics of E. faecalis.

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Differential Biofilm Susceptibility and Potent Isavuconazole Post-Antifungal Effect Distinguish Cutaneotrichosporon dermatis from Trichosporon asahii

Yoshinouchi, T.; Nakamura, T.; Mori, D.; Yasunaga, J.-i.; Tanaka, Y.

2026-08-31 microbiology 10.64898/2026.08.30.748177 medRxiv
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Cutaneotrichosporon dermatis (formerly Trichosporon dermatis) is a basidiomycetous yeast-like fungus known to cause summer-type hypersensitivity pneumonitis, although its virulence in humans remains poorly understood. We performed morphological and molecular identification of an isolate from the sputum and blood cultures of an immunocompromised patient, together with pathogenicity assessment using a Galleria mellonella model, biofilm formation/eradication assays, antifungal susceptibility testing, drug combination effects, and the post-antifungal effect (PAFE), compared with Trichosporon asahii. The isolate was identified as C. dermatis by ITS/IGS1 sequencing, supported by phylogenetic analysis. Growth of C. dermatis increased more at 37 than at 25. In the Galleria mellonella assay, C. dermatis, T. asahii, and Candida albicans each showed dose-dependent pathogenicity at sufficiently high inocula, although Rhizopus oryzae was the most potent pathogen on a per-CFU basis. C. dermatis formed biofilms that were more completely inhibited by terbinafine (TRB) and amphotericin B (AmB) than azole agents, which showed only partial inhibitory activity even at high concentrations. Susceptibility testing showed relatively strong susceptibility to AmB and azole agents. In the TRB and azole combination assay, the fractional inhibitory concentration index (FICI) was below 0.5, indicating synergy. Isavuconazole (ISC) showed a markedly stronger PAFE than the other azole agents tested. These findings indicate that although azoles show only partial efficacy against its biofilm, C. dermatis can still cause invasive infection, and that azole monotherapy or TRB and azole combination therapy, aided by the potent PAFE of ISC, may represent effective treatment options.