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Virulence

Informa UK Limited

Preprints posted in the last 90 days, ranked by how well they match Virulence's content profile, based on 21 papers previously published here. The average preprint has a 0.02% match score for this journal, so anything above that is already an above-average fit.

1
Establishment of Galleria mellonella as a Model for Achromobacter xylosoxidans Infection

Lam, H. N.; Lloyd, C.; Wimbush, B.; Lam, N. T.; Adams, P.; Acharya, P.

2026-01-27 microbiology 10.64898/2026.01.27.702115 medRxiv
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Achromobacter xylosoxidans (Ax) is an emerging pathogen with a strong capacity to adapt to different niches, but its pathogenesis is poorly understood. To investigate the virulence of this versatile bacterium, alternative infection models are valuable. Galleria mellonella wax moth presents cost and ethical advantages as an in vivo infection model. Here, we investigate the utility of Galleria as a model of Ax infection and demonstrate that mortality following Ax infection in Galleria recapitulates survival outcomes observed in infected mice. We further show that the Galleria infection model can be used to examine antimicrobial activity against Ax. Visualization of hemocytes suggested that Ax was internalized into immune cells, similar to what is observed in vertebrate models. Overall, our work establishes Galleria mellonella as a model of Ax infection that mirrors disease severity and innate immune cell interactions in murine models.

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Characterization of programmed cell death pathways activated in Mycobacterium tuberculosis-infected human macrophages

Ding, G.; Augenstreich, J.; Poddar, A.; Ganesh, A.; David, L.; Fisher, R.; Briken, V.

2026-02-02 cell biology 10.64898/2026.01.30.702894 medRxiv
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Mycobacterium tuberculosis (Mtb) primarily infects human lung macrophages, which serve as its major replication niche. Mtb can manipulate host macrophage cell death pathways to its advantage by inhibiting apoptosis and inducing necrotic cell death. However, the specific necrotic cell death pathway activated in human macrophages after Mtb infection remains unclear. Here, we used the THP-1 cell line and primary human monocyte-derived macrophage (hMDM) to analyze multiple programmed cell death pathways during days 1-3 after Mtb infection. Confocal microscopic analysis demonstrates that Mtb-infected THP-1 cells or hMDMs rarely exhibited apoptosis. Immunoblotting shows that Mtb induces significant CASP3 and GSDME activation in THP-1 cells, but not in hMDMs. We show that Mtb, in THP-1 cells but not hMDM, induces a significant increase in GSDMD cleavage, a hallmark of pyroptosis. MLKL phosphorylation was not observed in THP-1 cells or hMDMs during Mtb infections, indicating an absence of necroptosis. No changes in ferroptosis markers such as GPX4 expression or lipid peroxidation levels were detected. Time-lapse live-cell imaging revealed no lysosomal membrane permeabilization prior to plasma membrane rupture (PMR). However, we observed DNA release from Mtb-infected THP-1 cells and hMDMs after PMR. The DNA released from THP-1 cells exhibits low levels of myeloperoxidase and histone H3 citrullination. High-resolution confocal imaging shows that Mtb is associated with the released DNA. We demonstrate that pyroptosis induction in THP-1 cells is dispensable for the DNA release and cell death induction. In conclusion, our results reveal that Mtb-triggered cell death in hMDMs bypasses canonical cell death pathways like apoptosis, pyroptosis, necroptosis, and ferroptosis. Instead, cell death in both THP-1 cells and hMDMs correlates with DNA release, potentially through a pathway similar to NETosis in neutrophils.

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Blockade of Tim-3 pathway in a mouse model of Toxoplasmosis: impact on brain leukocyte infiltration, parasite burden, and neuroinflammation

Xiao, J.; Viscidi, R. P.; Huang, J.; Li, Y.; Severance, E. G.

2026-04-08 microbiology 10.64898/2026.04.06.716688 medRxiv
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Cell-mediated immune responses are crucial for protecting the host against Toxoplasma gondii infection. However, impaired immunity, such as T-cell exhaustion, is a common phenomenon during chronic infection. This may represent a strategy employed by T. gondii to evade host defenses. T-cell immunoglobulin and mucin-domain containing 3 (Tim-3) is an important regulatory molecule involved in cell-mediated immunity. This study examined the expression of Tim-3 and the effects of its blockade in a mouse model of toxoplasmosis. In mice with chronic T. gondii infection, we found that Tim-3 is highly expressed in both cyst-bearing and non-cyst-bearing tissues, and its expression correlates with the parasite burden. Blocking the Tim-3 pathway with an anti-Tim-3 antibody enhances the immune response, resulting in elevated levels of cytokines (IFN-{gamma}, IL-12p70, IL-2, IL-9) and the chemokine CXCL1 in the serum, increased leukocyte infiltration (CD3+, CD14+ cells) in the brain, and downregulation of Tim-3 expression in microglial cells. As a result, the anti-Tim-3 treatment resulted in a 62% reduction in the number of tissue cysts and a trend towards an increase in the homeostatic signature, P2RY12, in microglia. Our study provides proof of concept for an anti-Tim-3 approach in treating chronic T. gondii infection and potentially other brain-residing pathogens.

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The tobacco hornworm as a novel host for the study of bacterial virulence

Spencer, E. K.; Miller, C.; Bull, J. J.

2026-04-05 microbiology 10.64898/2026.04.04.716455 medRxiv
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The tobacco hornworm moth (Manduca sexta) is evaluated as a model of bacterial virulence and host-pathogen dynamics. Infections of Pseudomonas aeruginosa were established by injection of 5th-instar larvae, and multiple assays of virulence were evaluated. Infected larvae exhibited dose-dependent mortality, reduced growth, melanization, behavioral changes, and altered frass constitution. Even low-dose infections that were not fatal exhibited impaired growth, but individual growth trajectories revealed considerable heterogeneity among worms given the same dose. Twice-daily antibiotic treatment with gentamicin or cefepime improved survival four- to five-fold but did not rescue 100%. Heat-killed cells and filtered culture supernatant alone induced significant morbidity and mortality, suggesting secreted bacterial products are important to pathogenesis. Bacterial burden analysis revealed a shifting bacterial distribution over time, with decreasing hemolymph titers and increasing localization in fat body, gut, and carcass. Hornworms thus offer a more sensitive analysis of bacterial infection dynamics and consequences than do larvae of the more commonly used wax moth.

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The Amt2 Gene is Key for Cryptococcus neoformans Transmigration Across The Blood-Brain Barrier and Closely Linked to Its Capsule Formation

Jamklang, M.; Rangdist, S.; Pakdeesiriwong, N.; Kanklang, E.; Penkhrue, W.; Wangboon, C.; Weeranantanapan, O.; Chumkiew, S.; Chantree, P.; Martviset, P.; Chayakulkeeree, M.

2026-01-30 microbiology 10.64898/2026.01.30.702728 medRxiv
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The cryptococcal Amt family of ammonium transporters have been identified from our previous studies as one of the most highly upregulated proteins during transmigration in an in vitro blood-brain barrier (BBB) model, however, the role of this gene family has never been reported. Therefore, this study aimed to investigate the role of the Amt2 gene in the transmigration of C. neoformans across the BBB, examine its association with other common virulence factors, and assess its relevance to morphological changes in C. neoformans. The results showed that the C. neoformans mutant strain lacking the Amt2 gene (amt2{Delta}) exhibited a significantly reduced ability to transmigrate across the BBB in an in vitro model. Our findings suggest that C. neoformans primarily utilizes a transcellular mechanism for invasion, as indicated by the FITC-dextran permeability assays. Additionally, the size of polysaccharide capsule was significantly smaller in the mutant strain compared to the wild-type. In conclusion, our study proposed that the Amt2 gene plays a crucial role in both the transmigration process and capsule production in C. neoformans, without affecting morphological changes. Our study provides a foundation for future research into the underlying mechanisms of the Amt2 gene in C. neoformans pathogenesis. Author summaryCryptococcus neoformans transmigrates the blood-brain barrier through various mechanisms, with transcellular migration being the major route leading to cryptococcal meningitis. In this study, we identified the Amt2 gene, a member of the Amt family of ammonium transporters, as playing a crucial role in the funguss transmigration process. Our findings indicate that the Amt2 gene promotes capsule production and facilitates the transmigration of C. neoformans, all while not causing damage to human endothelial cells.

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Virulence studies of the human gut pathobiont Bilophila wadsworthia using Galleria mellonella as model host

Matos, S.; Moniz, B.; Mil-Homens, D.; Pereira, I. C.; Pimenta, A. I.

2026-03-25 microbiology 10.64898/2026.03.24.714029 medRxiv
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Bilophila wadsworthia is a gut pathobiont implicated in dysbiosis-driven inflammation, yet its pathogenic mechanisms remain poorly investigated. Here, we evaluated the suitability of Galleria mellonella larvae as an in vivo model to study B. wadsworthia infection. Two infection routes were compared: oral inoculation to mimic gastrointestinal colonization and hemolymph injection to model systemic infection. Oral challenge had minimal impact on larval health, whereas hemolymph injection caused marked morbidity, including reduced mobility, impaired cocoon formation, and progressive melanization, indicating that access to the circulatory system is required for overt disease. Infection required live bacteria, with B. wadsworthia capable of intracellular replication within hemocytes, leading to transient depletion of circulating immune cells followed by compensatory hemocyte proliferation. These findings reveal tight coupling between bacterial proliferation and host immune dynamics. Comparison with other sulfidogenic bacteria suggests that Bilophila pathogenicity is likely to involve host-specific interactions. Overall, our results establish G. mellonella as a practical and ethically favorable model to investigate B. wadsworthia virulence, host-pathogen interactions, and mechanisms relevant to gut-associated infection.

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The Ser83, Arg85, Tyr88, Asn124, Lys192 of C-terminal Lipid-associated membrane hemagglutinin affecting Mycoplasma synoviae agglutination of erythrocyte

Duoduo, S.; Bao, S.; Guo, L.; Chen, X.-H.; Wong, F.-Q.; he, x. x.; Wang, Q.; Shi, Y.; He, S.; Li, J. d.

2026-04-09 microbiology 10.64898/2026.04.08.717210 medRxiv
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Mycoplasma synoviae is an avian pathogen that causes respiratory disease and synovitis, and its hemagglutinin plays a critical role in host cell adhesion. However, the key residues and structural mechanisms underlying hemagglutination remain unclear. In this study, domain analysis of the hemagglutinin family of Mycoplasma synoviae revealed that it contains long-chain and short-chain types, among which LAM HA (VY93_RS01465) was selected as the bait protein due to its complete C-terminal conserved domain. Through yeast two-hybrid screening, 18 host proteins interacting with LAM HA were identified. Furthermore, five key amino acid residues S83, R85, Y88, N124, and K192 were found to mediate hemagglutination activity. Deletion of these residues reduced the hemagglutination titer of LAM HA under acidic conditions. Secondary structure analysis showed that the deletion mutation decreased the -helix content while increasing the proportions of {beta}-sheet and random coil. Molecular dynamics simulations revealed that the mutant exhibited generally higher root mean square deviation and root mean square fluctuation values than the wild-type under different pH conditions, with a marked decrease in structural stability particularly at pH 5.0 and 6.0. These findings indicate that LAM HA, as a critical adhesin, exerts its hemagglutination function dependent on specific key residues and pH-sensitive conformational stability. IMPORTANCEMycoplasma synoviae (M. synoviae) causes significant economic losses to the poultry industry worldwide. Lipid-related membrane protein hemagglutinin (LAM HA) is a surface adhesin essential for host cell attachment, but its precise amino acid residues and structural features have not been defined. In this study, five key residues (S83, R85, Y88, N124, and K192) were identified as critical for LAM HA-mediated hemagglutination activity. Deletion of these residues altered the secondary structure composition, reduced conformational stability under acidic pH conditions, and decreased hemagglutination activity. These findings reveal a previously unknown structure-function relationship of M. synoviae LAM HA, demonstrating that its hemagglutination activity depends on specific residues and pH-sensitive structural integrity. This provides new insights into the molecular mechanisms of M. synoviae adhesion and offers potential targets for the development of novel intervention strategies against avian mycoplasmosis.

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Integrin beta 1 and mannose receptor 2 are involved in the antifungal activity of bronchial epithelial cells through Aspergillus fumigatus lectin FleA interactions

Millet, N.; Moreau, A.; Tarizzo, M.; Marti, L.; Varrot, A.; Gillon, E.; Richard, N.; Pionneau, C.; Chardonnet, S.; Varet, H.; Morichon, R.; Guitard, J.; Guillot, L.; Balloy, V.; Bigot, J.

2026-02-27 cell biology 10.64898/2026.02.26.708144 medRxiv
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Aspergillus fumigatus is a world-wide saprophyte filamentous fungus which released conidia, its infectious morphotype, in the atmosphere. These conidia are inhaled daily by humans and can colonize the respiratory tract, where they may develop into hyphae, the invasive morphotype. We previously showed that bronchial epithelial cells (BECs) restrict A. fumigatus virulence by inhibiting conidial germination and filament formation through a process requiring PI3K signaling and the conidial fucose-specific lectin FleA. In the present study, we are looking to identify host factors and cellular partners involved in the BEC antifungal response and to define the molecular interactions underpinning FleA recognition. For this, we analyzed transcriptome of BECs infected with A. fumigatus in the presence or absence of the PI3K inhibitor LY294002. Functional involvement of candidate genes was assessed by siRNA knockdown and readouts of fungal filamentation (microscopic scoring and galactomannan release). FleA-interacting host proteins were identified by biotin-FleA affinity co-precipitation coupled to Tandem mass spectrometry, and validated by surface plasmon resonance and biolayer interferometry. The spatiotemporal dynamics of FleA and candidate partners were analyzed by confocal microscopy and proximity ligation assay We demonstrated that BEC antifungal activity involves at least two complementary pathways: a PI3K/laminin-332 axis promoting conidial adhesion, and a FleA-dependent pathway engaging ITGB1 and MRC2 consistent with lectin uptake and trafficking toward LAMP1-positive compartments. These findings nominate FleA-host receptor interactions as attractive targets for anti-adhesive strategies against A. fumigatus. Author summaryFungal pathogens are an increasing threat to public health, as they are becoming more common and harder to treat due to rising drug resistance. Among them, Aspergillus fumigatus has been classified as a critical pathogen by the World Health Organization (WHO). This filamentous fungus delivers spores in the air daily, which are constantly inhaled by humans. In people with weakened immunity, these spores can cause a range of lung diseases known as aspergillosis, with severity ranging from mild to life-threatening. Lung epithelial cells are the first cells of the respiratory tract to encounter inhaled spores. In a previous study, we showed that bronchial cells can prevent spore from developing into filaments, the invasive form of A. fumigatus that is responsible for tissue damage. This protective effect depends of on the recognition of a fungal protein called FleA. In the present study, we identified host cell proteins that bind to FleA and transport it into intracellular compartments. Our findings suggest that these proteins help bronchial epithelial cells to internalize fungal spores, thereby blocking their transformation into the invasive filamentous form.

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Characterisation of novel Campylobacter jejuni Type VI secretion system (T6SS) effectors and exploration of the roles of the C. jejuni T6SS in bacterial antagonism and human host cell interaction

Omole, Z.; Gupta, S.; Webster, M.; Liaw, J.; Hong, G.; Davies, C.; Elmi, A.; Corcionivoschi, N.; Wren, B. W.; Aksoy, E.; Inaoka, D.; Mallick, A. I.; Hachani, A.; Dorrell, N.; Gundogdu, O.

2026-03-26 microbiology 10.64898/2026.03.25.714310 medRxiv
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Campylobacter jejuni is a leading global cause of acute foodborne gastroenteritis however, C. jejuni lacks some of the classic virulence determinants associated with other common enteric bacterial pathogens. In recent years an increasing number of C. jejuni isolates have been identified to encode Type Six Secretion System (T6SS), an apparatus utilised by Gram-negative bacteria to secrete toxic bacterial effectors into neighbouring cells. Despite the prevalence of the T6SS and previous investigations, the roles of the C. jejuni T6SS are still not well characterised especially when compared to our knowledge of other clinically relevant T6SS-positive bacterial species. Additionally, as of yet, no C. jejuni T6SS cargo effectors have been characterised. In this study, we show the C. jejuni 488 strain T6SS displays contact-dependent antagonistic behaviour towards T6SS-negative C. jejuni, Campylobacter coli, Escherichia coli and Enterococcus faecium strains suggesting the presence of the T6SS contributes to the competitive capacity of this C. jejuni T6SS-positive strain. Moreover, this antagonistic activity is linked to the functionality of CJ488_0980 and CJ488_0982, two novel putative Tox-REase-7 domain-containing effectors, which were identified through bioinformatical analysis of the C. jejuni 488 strain genome. Additionally, our investigations propose the C. jejuni 488 T6SS contributes to interaction, invasion and intracellular survival in human intestinal epithelial cells (IEC). Collectively, these initial findings are the first examples of in vitro investigation of putative cargo effectors in Campylobacter spp. and provide valuable insights into the roles of C. jejuni T6SS effectors in bacterial competition and pathogenesis. This study highlights the importance of T6SS as an emerging virulence determinant in Campylobacter spp. warranting further investigation.

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Functional and transcriptomic analyses in Neurospora crassa reveal the crucial role of N-glycoprotein deglycosylation process in fungal homeostasis.

Samaras, A.; Hossain, T. J.; Karlsson, M.; Tzelepis, G.

2026-03-25 microbiology 10.64898/2026.03.25.714127 medRxiv
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N-glycosylation is an essential post-translational modification required for proper protein folding, stability, trafficking, and secretion in eukaryotes. In such organisms, an efficient endoplasmic reticulum (ER) quality control, such as the ER-associated degradation (ERAD) pathway, is critical for maintaining cellular homeostasis. During ERAD, terminally misfolded glycoproteins undergo N-deglycosylation prior to proteasomal degradation, a process typically mediated by peptide N-glycanase (PNGase). However, in the filamentous fungi, the PNGase seems to be catalytically inactive, indicating evolutionary divergence from the canonical PNGase pathway. Filamentous fungi also encode endo-{beta}-N-acetylglucosaminidases (ENGases), particularly members of glycoside hydrolase family 18 (GH18), which may compensate for the loss of canonical PNGase activity. Here, we investigated the roles of the cytosolic GH18 ENGase and a putative acidic PNGase in N. crassa using transcriptomic and functional approaches. Our results demonstrate that the cytosolic GH18 ENGase is an active deglycosylating enzyme likely associated with the ERAD pathway, whereas no deglycosylation activity was detected for the acidic PNGase. Deletion of the ENGase severely compromises tolerance to diverse stress conditions and induces substantial transcriptomic reprogramming, including upregulation of a GH20 exo-{beta}-N-acetylhexosaminidase under ER stress. These findings identify cytosolic ENGase as a key component of fungal proteostasis and suggest that N. crassa activates alternative compensatory mechanisms to maintain protein quality control when canonical deglycosylation pathways are impaired.

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Diverse Lyme disease spirochete species evade restriction by human complement

Golovchenko, M.; Krätzerova, L.; MacTavish, H.; Lloyd, V. K.; Rudenko, N.

2026-01-20 microbiology 10.64898/2026.01.20.700503 medRxiv
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Disseminated human Lyme borreliosis (LB) is traditionally associated with invasive spirochete species from the Borrelia burgdorferi sensu lato (s.l.) complex. The Borrelia burgdorferi sensu lato complex consists of 23 spirochete species worldwide, with additional species being proposed. Interactions between the host immune system and Borrelia species have been studied for a diverse range of vertebrate reservoirs of LB spirochetes, including lizards and snakes, as well as the widely recognized rodent and bird reservoirs. Humans are the vertebrate species most susceptible to B. burgdorferi s.l. spirochetes, as demonstrated by the increasing number of diagnosed LB cases worldwide. However, few studies have evaluated differences in the borreliacidal action of human complement against specific Borrelia species. Using the serum sensitivity test, we analyzed whether complement-mediated killing of 10 spirochete species from the B. burgdorferi s.l. complex varies among healthy human individuals of different ages and sexes. Our results show that the 10 genospecies exhibit varying sensitivities to human complement and can be classified into three statistically distinct groups: high, medium, and low sensitivity. Complement sensitivity did not correlate with the known human health impact of these genospecies; similar resistance to the killing effects of human serum was found among Borrelia species that are major causes of LB worldwide and species with unclear pathogenicity to humans. Additionally, females showed reduced complement-mediated Borrelia killing compared to males for all Borrelia species in almost all age groups. Age and biological sex interacted for the Borrelia species most sensitive to human complement. Overall, the effectiveness of complement-mediated killing of the different Borrelia species tended to decrease with age, with more complex age-dependent changes observed for some Borrelia species.

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Loss of sphingomyelin synthase-1 does not cause egg retention or locomotion defects in Caenorhabditis elegans

Wang, W.; Gao, X.; Pocock, R.

2026-02-12 genetics 10.64898/2026.02.10.705178 medRxiv
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Sphingomyelin is a critical sphingolipid found in plasma membranes of metazoa that provides structural and communicative functions. Sphingomyelin synthases are key enzymes that generate sphingomyelin but their precise functions in animal development and function are not fully understood. The Caenorhabditis elegans model encodes five sphingomyelin synthases (sms-1-5). Previously, egg-laying and locomotion phenotypes were observed in an sms-1(ok2399) deletion mutant. In this study, we attempted to replicate these findings to enable mechanistic dissection of sphingomyelin function. We indeed found that the sms-1(ok2399) mutant exhibited egg-laying and locomotion defects, however, we were unable to rescue this phenotype. Further, we generated two additional sms-1 deletion mutants (rp398 and rp399) and found that their egg-laying and locomotion behavior is not different to wild-type animals. We suggest that the sms-1(ok2399) contains a background mutation that causes behavioral deficits, and that SMS-1 loss does not overtly affect C. elegans egg-laying or locomotion.

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An ancient gene duplication is implicated in virulence in the human pathogen, Histoplasma

Sepulveda, V. E.; Li, J.; Turissini, D. A.; Rader, J. A.; Kompathoum, O.; Matute, D. R.

2026-02-25 microbiology 10.64898/2026.02.25.708051 medRxiv
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Histoplasma spp. is a dimorphic fungal primary pathogen that infects people worldwide and frequently affects immunosuppressed patients. Previous studies have identified the AMY1 gene product, the -amylase Amy1p, as essential for -glucan production and virulence in Histoplasma capsulatum. We identified two new genes (AMY2 and AMY3) in the Histoplasma genome that encode putative -amylases and made mutants using CRISPR/Cas9 technology, followed by evaluation of their role in -glucan biosynthesis and virulence. We also searched for AMY gene copies in 19 fungal genomes with the goals of identifying orthologs for AMY2 and AMY3, and establishing how many AMY copies existed across different fungi. We found that the number and type of -amylases vary depending on the fungal species; that all -amylases related to Histoplasma Amy1p belong to the GH13_5 subfamily, and all orthologs related to Histoplasmas Amy2p and Amy3p belong to the GH13_1 subfamily. We performed phylogenetic analyses of the three paralogs and revealed that the Histoplasma AMY duplications are ancient. We further established Amy2 is an ortholog of Aspergillus niger AgtA, and Aspergillus nidulans AmyD, and that it is partially involved in Histoplasma -glucan biosynthesis and virulence, while Amy3p is an ortholog of Aspergillus flavus Amy1, and it is dispensable for -glucan biosynthesis and virulence.

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Tools for genetic manipulation of the endemic fungal pathogen, Emergomyces africanus, and the application of a fluorescent reporter strain in infection models

Duvenage, L.; Chetty, A.; Thomson, D. D.; Ballou, E. R.; Govender, N. P.; Rappleye, C. A.; Hoving, J. C.

2026-03-06 microbiology 10.1101/2025.11.14.688410 medRxiv
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AbstractEmergomyces africanus is a thermally dimorphic fungal pathogen endemic to Southern Africa which can cause fatal systemic infections in persons with advanced HIV disease. Its mechanisms of pathogenesis are not well understood. Characterisation of virulence traits in this pathogen requires appropriate molecular tools for genetic manipulation. Molecular technologies developed for the transformation of H. capsulatum were adapted for use in E. africanus. Agrobacterium-mediated transformation was used to generate a reporter strain expressing green fluorescent protein (GFP). The E. africanus GFP reporter strain facilitated the study of yeast interaction with macrophages in vitro and allowed the identification of infected phagocyte cell types in the mouse lung by flow cytometry. E. africanus could also maintain episomal plasmids with telomere-like sequences, to introduce expression constructs without genome modification. Using this plasmid system, RNA interference constructs were used to knock down the expression of cell wall (1,3)-glucan by targeting the transcripts of the -glucan synthase (AGS1). An episomal CRISPR/Cas9 system was evaluated for E. africanus, which effectively disrupted GFP in a reporter strain and enabled the generation of a URA5 uracil auxotroph. These tools and strains will facilitate future studies to elucidate the mechanisms of pathogenesis of E. africanus. ImportanceEmergomyces africanus is an opportunistic fungal pathogen affecting persons with advanced HIV disease in South Africa. The biology and pathogenesis of E. africanus are not well understood, as the importance of the disease caused by this fungus (emergomycosis) has only been recognised in recent years and molecular studies have been impaired by the lack of genetic technologies. In this work, we describe tools and methods for the genetic modification of this pathogen, which will accelerate future studies investigating how the fungus causes disease in the human host. These essential tools include (1) the ability to create fluorescent reporter strains, such as the green fluorescent protein E. africanus strain described here, which facilitates tracking the spread of the fungus during infection and enhances microscopy studies, (2) methods for knocking down gene expression in E. africanus, and (3) the permanent disruption of genes through CRISPR/Cas9 gene editing.

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Metabolic plasticity and virulence of Cryptococcus neoformans are regulated by mitochondrial homeostasis

Patino-Medina, J. A.; Camacho, E.; Casadevall, A.

2026-02-10 microbiology 10.64898/2026.02.06.704083 medRxiv
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The mitochondrion is a versatile organelle involved in diverse processes, such as cell death, metal homeostasis, plasma membrane and cell wall integrity, stress response, oxygen concentration, temperature, and metabolic adaptation, in addition to its role in generating energy. Consequently, mitochondrial fitness is essential for the pathogenicity of various organisms, including fungi. Cryptococcus neoformans is a fungal pathogen responsible for over 180,000 HIV-related deaths each year. In this study, we analyzed C. neoformans metabolic plasticity when grown with non-fermentable carbon sources and their impact on virulence and mitochondrial homeostasis. Growth on non-fermentable carbon sources increased thermotolerance, glucuronoxylomannan (GMX) content in the capsule, melanization rate, urease activity, biofilm formation, and virulence. Moreover, cells grown on non-fermentable carbon sources manifested increased mitochondrial number and activity. Conversely, mutants of the master regulator of mitochondrial biogenesis, the Hap complex, the catalytic subunit 1 of protein kinase A, or media supplementation with antioxidants, decreased the use of alternative carbon sources, capsule formation, melanin synthesis, urease activity, mitochondrial number, and resistance to both fluconazole and macrophage killing. Our results implicate mitochondrial homeostasis in virulence regulation via the PKA pathway, suggesting that targeting fungal mitochondrial homeostasis could be a therapeutic approach for cryptococcosis.

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HAC1 contributes to stress adaptation and virulence in the emerging fungal pathogen Candida auris

Oiki, S.; Abe, M.; Hirasawa, A.; Koizumi, A.; Otani, A.; Shinohara, T.; Miyazaki, Y.

2026-03-19 microbiology 10.64898/2026.03.19.712804 medRxiv
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Candida auris (Candidozyma auris) is an emerging multidrug-resistant fungal pathogen that poses a significant global health threat. However, the molecular mechanisms underlying its virulence remain incompletely understood. In this study, we performed in vivo transcriptome analysis using an immunosuppressed mouse gastrointestinal infection model to identify genes associated with host-adaptation and virulence during infection. By comparing fungal transcriptomes obtained from colonization and dissemination sites with those from in vitro cultures, we identified genes that were consistently upregulated during infection. Among these genes, the unfolded protein response regulator HAC1 was selected as a candidate virulence-associated gene for further analysis. RT-PCR and sequencing analyses revealed that HAC1 mRNA in C. auris undergoes an unconventional splicing event of 287 bp that is enhanced under ER stress conditions. The excised region spans the annotated open reading frame boundary, suggesting that the translated region of HAC1 may require re-evaluation. Notably, a proportion of HAC1 transcripts appeared to be spliced even under non-stress conditions, indicating a detectable basal level of UPR activation. Differences in splicing dynamics were also observed among clade strains. Functional analyses demonstrated that deletion of HAC1 increased sensitivity to ER stress and heat stress. The HAC1 deletion mutant also exhibited reduced virulence in both Galleria mellonella and immunosuppressed mouse infection models, as evidenced by delayed host mortality and decreased fungal burdens, respectively. These findings indicate that HAC1 contributes to ER stress adaptation, thermotolerance, and survival in the host environment, and identify HAC1 as a virulence-associated gene in C. auris.

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Slow-growing human cell lines are a suitable alternative to rabbit Sf1Ep cells for in vitro cultivation of Treponema pallidum

Capuccini, K.; Govender, D.; Goulding, D.; Kyanya, C.; Pasricha, S.; Giacani, L.; Thomson, N. R.; Grillova, L.

2026-02-04 microbiology 10.64898/2026.02.04.703719 medRxiv
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Treponema pallidum subsp. pallidum, the causative agent of syphilis, remains difficult to study owing to long-standing limitations in in vitro cultivation. Although a rabbit epithelial cell co-culture system (Sf1Ep) enabled major advances in recent years, the lack of human cell-based models restricts clinical relevance and mechanistic insight into host-pathogen interactions. Here, we sought to establish a co-culture system that uses human epithelial cell lines capable of supporting T. pallidum growth in vitro. Six human epithelial or epithelial-like cell lines from diverse tissue origins were evaluated under microaerophilic conditions using the standard T. pallidum cultivation medium. Among these, CAL-39 (vulva) and HepG2 (liver) supported T. pallidum survival, replication, characteristic growth behaviours, and long-term passage at levels comparable to Sf1Ep cells. Growth kinetics, attachment dynamics, and motility of T. pallidum were quantified over extended culture periods. Using live-cell imaging in this co-culture system, for the first time we were able to define two distinct T. pallidum host-cell interaction behaviours; surface-associated crawling and stable single-polar attachment. Both behaviours were observed across all tested host cell lines and persisted over time only in cell lines permissive for sustained growth. Together, our findings establish clinically-relevant human epithelial co-culture models for T. pallidum, provide new insights into host-cell-dependent growth and motility, and create a platform for future mechanistic studies of syphilis pathogenesis and vaccine target discovery.

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Targeted mutagenesis in Ehrlichia canis deleting the phage head-to-tail connector protein gene and its assessment as a vaccine candidate preventing canine ehrlichiosis

Ferm, D.; Nair, A.; Ferm, J. D.; Liu, H.; Wang, Y.; Crosby, L. F.; McGill, J. F.; Latre de Late, P.; Stoll, I.; Chauhan, D.; Choudhury, D.; Madesh, S.; Ganta, S.; Burne, A.; Ozubek, S.; Ganta, R. R.

2026-01-30 microbiology 10.64898/2026.01.29.702648 medRxiv
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Ehrlichia canis is primarily a Rhipicephalus sanguineus tick-borne rickettsial pathogen initially identified as causing canine monocytic ehrlichiosis, and infections in people have also been reported in Venezuela, Mexico, and parts of Europe. It is of high importance to have a vaccine suitable in protecting the canine host, which will aid in lessening E. canis infections also in people. Gene inactivation mutations in the phage head-to-tail connector protein genes (phtcp) from E. chaffeensis and A. marginale caused attenuated growth, and prior infection with the mutated bacteria induced protective immunity against wild-type bacterial infections in natural hosts, independent of blood-borne infection or tick-transmission infection. In the current study, we describe the development of targeted mutagenesis for the first time in E. canis genome and with a novel modification to avoid introducing antibiotic resistance cassettes to delete the phtcp ortholog from E. canis. The mutated E. canis was then assessed for its in vivo growth and the induction of host immunity exerted following the mutant infection aiding to protect against wild-type infection challenge in the canine host. We assessed systemic pathogen loads, hematological parameters, IgG immune responses, and plasma cytokines following the mutant infection relative to uninfected dogs. Similarly, the assessments were carried out following wild-type pathogen infections in dogs with or without prior mutant infection challenges. The study demonstrates that prior infection of dogs with the mutant induces immunity to prevent infection establishment by wild-type E. canis. Similarly, the mutant infection resulted in clear biological differences compared to the wild-type infection. This study establishes that the molecular genetic methods are broadly applicable to pathogens belonging to the family Anaplasmataceae and that the modified live vaccines with phtcp gene orthologs are valuable in reducing the diseases caused by the tick-borne rickettsial pathogens belong to Anaplasmataceae, including E. canis.

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Recapitulating whipworm development in vitro using caecaloids

Tran, D.; Tolley, C.; Morris, T.; Hart, E.; Berriman, M.; Doyle, S.; Duque-Correa, M. A.

2026-03-17 microbiology 10.64898/2026.03.16.712207 medRxiv
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Whipworms (Trichuris spp.) are intracellular intestinal parasites that develop within the host caecal epithelium, yet the host signals that regulate their growth and developmental progression remain poorly understood. Progress in studying these processes has been limited by the lack of physiologically relevant in vitro systems capable of supporting sustained whipworm development. Here, we established an in vitro infection system using caecal organoids (caecaloids) and evaluated their capacity to support sustained growth and morphological development of Trichuris muris larvae. To rigorously validate this system, we generated a comprehensive and up-to-date anatomical and biometrical reference dataset describing the whole-body growth and tissue-level morphogenesis of T. muris throughout its life cycle in vivo. Quantitative analysis across larval and adult stages confirmed that the trajectory of parasite growth is largely conserved across host mouse strains and provided a detailed contextualised description of the development of key anatomical structures of T. muris. Using this reference framework, we evaluated parasite growth and development in long-term T. muris-caecaloid co-cultures. Larvae invading the caecaloid epithelium remained intracellular within syncytial tunnels and exhibited sustained growth over extended culture periods. in vitro parasites developed increasing anatomical complexity, including formation of the bacillary band, stichosome, intestine, and rectum. Importantly, quantitative comparisons revealed that larvae developing within caecaloids follow growth trajectories and morphological developmental patterns closely resembling those observed in vivo. This study therefore presents the first detailed anatomical and morphometric framework for validating whipworm development in an organoid system and provides concrete evidence that the caecaloid epithelium is sufficient to trigger and sustain whipworm growth and morphogenesis, establishing caecaloids as a powerful experimental platform for investigating Trichuris infection and development.

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Making the best of a sticky situation: Infection-mediated endothelial activation promotes new interactions with adhesins of the host-adapted Lyme disease spirochete

Alvarez Olmedo, D.; Tan, X.; Scott, C.; Shcherbakova, A.; Chaconas, G.

2026-02-21 microbiology 10.64898/2026.02.20.707099 medRxiv
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Lyme disease, caused by the spirochete Borrelia burgdorferi and closely related Lyme Borrelia, is the most prevalent tick-borne illness in the northern hemisphere. An important pathway for B. burgdorferi dissemination is its interaction with, and traversal of the vascular endothelium, a process that is not well understood and is mediated by spirochete surface adhesins. We show here that infection-induced activation of the endothelium in BALB/c mice results in new B. burgdorferi-endothelial interactions, indicating the presence of spirochete factors that interact specifically with activated endothelial cells. We show that these interactions are mediated by spirochetal surface proteins whose synthesis is dependent upon B. burgdorferi host adaptation. We used intravital microscopy and a functional gain approach to assess the binding of spirochetes that withstand the shear force of blood flow in post-capillary venules of living mice. We identified five previously undescribed, shear force-resistant adhesins that selectively mediate binding to activated endothelium (BBA66, P66, BBA36, BBA07 and DbpA) and interact with activation-induced endothelial surface changes. Two of these adhesins (P66 and DbpA) have been implicated in the spirochete extravasation process. We also identified seven previously undescribed shear force-resistant adhesins that target pre-activated endothelium (BBA04, BBK53, BBK07, BBA65, BB0844, ErpK and OspC). Three of these (BBK53, ErpK and OspC), display reduced binding to activated endothelium, a property that may facilitate the multi-step pathway of vascular transmigration. In particular, OspC has been previously implicated in spirochete extravasation. In summary, our results reveal a dynamic interaction network between the spirochete and the endothelium where the spirochete capitalizes on activation of the endothelium to establish new interactions and at the same time disrupt others. We propose that this scenario is part of a sequential interaction network leading to transendothelial migration of the spirochetes and subsequent tissue invasion. This work opens a new area of study focusing on eleven new adhesins described here and their vascular interactions and role in spirochete extravasation.