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Langmuir

American Chemical Society (ACS)

Preprints posted in the last 90 days, ranked by how well they match Langmuir's content profile, based on 36 papers previously published here. The average preprint has a 0.02% match score for this journal, so anything above that is already an above-average fit.

1
Excited state Relaxation Activation Energy (ESRAct) of Di-4-ANEPPDHQ Maps Nanoscale Molecular Organization in Biomembranes

Medda, D.; Tripathy, A.; Bag, N.

2026-07-17 biophysics 10.64898/2026.07.17.739057 medRxiv
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Live cell plasma membranes show spatially heterogeneous liquid-ordered (Lo)-like and liquid-disordered (Ld)-like regions similar to the co-existing Lo/Ld phases observed in lipid vesicles. The Lo-like regions are relatively less hydrated and less polar due to tight packing of the membrane components compared to the Ld-like regions. The steady-state fluorescence spectra of Di-4-ANEPPDHQ (Di-4), a widely used polarity-sensitive probe, is blue or red shifted when solvated in less polar (Ld- like) or more polar (Lo-like) regions respectively. However, quantification of Di-4 fluorescence in blue and red channels for the evaluation of membrane phase state suffers from the lack of specific wavelength choice for these two channels and Di-4s relatively higher concentration in Ld phase (red channel) due to its partitioning preference. To address these issues, we employed fluorescence lifetime of Di-4, a concentration independent photophysical parameter, to understand membrane biophysical properties. The fluorescence lifetime of Di-4 in lipid vesicles exhibits Arrhenius-like temperature dependence. Centred around this energetic feature of Di-4 photophysics, we developed a novel analytical module, namely excited state relaxation activation energy (ESRAct), that serves as an intrinsic descriptor of the membrane nano-environment sensed by this probe. We show that the ESRAact value scales with increasing disorder in nanoscale phase separation (i.e., ESRAct of pure Ld > mixed Ld/Lo > pure Lo phase). We then extended its applications to giant plasma membrane vesicles (GPMVs) isolated from MCF-7 cells and found that these vesicles exhibit nanoscale Lo/Ld co-existing phase within 16-37{degrees}C. We envisage wide applications of ESRAct to delineate plasma membrane phase behavior as well as general photophysical studies on other newly designed polarity-sensitive probes.

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Stability and Compressibility of Tear Film Lipid Layer: Impact of Benzalkonium Chloride Presence

Chen, J.; Zhang, Y.; Nguyen, T. M. H.; Tsukruk, V. V.

2026-06-17 biophysics 10.64898/2026.06.13.731656 medRxiv
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PURPOSEBenzalkonium chloride (BAK), a common preservative in eye drops, has a major side effect of dry eye. The mechanisms are typically attributed to BAK cytotoxicity. However, due to its surfactant properties, BAK can disrupt the tear film lipid layer (TFLL), leading to dry eye. This study examined the stability and compressibility of the TFLL and the impact of the presence of BAK. METHODSMeibomian gland secretion (meibum, source of the TFLL) was collected from sacrificed cows eyelids. Lipids were extracted by dissolving meibum in chloroform to a final concentration of 1 mg/mL, with one solution additionally containing 0.1 mg/mL BAK. Each solution was overlaid on a water subphase in a Langmuir Trough-Blodgett trough. The changes of surface pressure ({pi}) with area (A) for the lipid film upon compression were monitored, and the corresponding compression modulus (Cs-1) at each data point was determined. RESULTSThe {pi}-A isotherms for meibum lipid monolayers exhibited near-reversible behavior with a smooth profile with a maximum {pi} of approximately 32 mN/m. The Cs-1-{pi} isotherms of the meibum lipid monolayer show that the films are gel-like with a constant compressive modulus of 24-32 mN/m within the surface pressure range of 8-30 mN/m. In contrast, adding BAK dramatically decreased the maximum surface pressure to only 10 mN/m and the compressive modulus to only 2-10 mN/m. CONCLUSIONSThis study demonstrated that BAK disrupts the meibum lipid layer by forming a monolayer with decreased stability and reduced compressive resistance, a mechanism that may underlie its dry-eye side effect yet has largely been neglected.

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Ionizable Lipids Promote Curvature Remodeling and Altered Fluctuation Dynamics in Endosomal Membranes

Kumarage, T.; Li, Y.; Sengul, B. S.; Mustafa, M. B.; Lou, J.; Best, M. D.; Schroeder, C. M.; Leal, C.

2026-08-20 biophysics 10.64898/2026.08.17.745287 medRxiv
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Inefficient endosomal escape is a crucial barrier to intracellular delivery of nucleic acid therapeutics using lipid nanoparticles (LNPs). The use of ionizable lipids (ILs) has significantly improved cargo delivery efficiency, yet the physical basis of their interaction with endosomal membranes and their role in endosomal escape remain unclear. It has been suggested that, as ILs become cationic during endosomal acidification, electrostatic affinity promotes fusion of the LNPs with the endosome. In this paper, we propose an additional mechanism in which ILs are redistributed from LNPs to host membranes, modulating the elastic properties and curvature of the membrane, lowering the energetic threshold for endosome disruption. To test this, we quantified the spontaneous curvature of clinically relevant ILs and ATP-binding lipids and measured the membrane mechanics of giant unilamellar vesicles (GUVs) with an endosome-relevant composition at endosome-relevant pH. Small-angle X-ray scattering (SAXS) measurements reveal that the incorporation of ILs and ATP lipids into endosome-mimetic membranes shifts the spontaneous curvature towards more negative values. Micropipette aspiration experiments indicated a decrease in the apparent area compressibility modulus of membranes doped with ILs and ATP lipids. In addition, membranes showed enhanced fluctuation amplitudes and altered relaxation behavior, consistent with membrane perturbations associated with lipid insertion and pH- or ATP-driven destabilization. Under conditions promoting the partitioning of ILs or ATP-binding lipids, we further observed reduced bending rigidity and increased heterogeneity in membrane tension. Together, these results support a model in which ILs (as well as newly developed ATP-binding lipids) partition into endosomal membranes, softening the membrane and generating local curvature frustration that facilitates endosomal disruption during the natural acidification process. By quantitatively linking lipid composition with changes in membrane elasticity and fluctuation dynamics, this work provides a biophysical framework for understanding how lipid redistribution may contribute to endosomal escape and improve delivery efficiency.

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Surface Functionality and pH Govern Structural Dynamics and Drug Binding in PETIM and PAMAM Dendrimers

Garg, A.; Mogurampelly, S.; Kanchi, S.

2026-08-07 biophysics 10.64898/2026.08.04.742721 medRxiv
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1.Surface functionality and pH play a decisive role in governing the structural dynamics, hydration, and drug-binding behaviour of dendrimers. Here, all-atom molecular dynamics (MD) simulations were performed on five generations of PAMAM (G1-G5) and PETIM (G2-G6) dendrimers with O-core and N-core architectures, functionalized with amine, carboxylic acid, or sugar terminal groups under different protonation states. Protonation of the tertiary branch-point amines expands the dendrimer structure, increases internal porosity and hydration, and enhances structural fluctuations across both families. In contrast, non-protonated amine -NH2 (NP) and carboxylic acid -COOH (NP) terminated dendrimers, together with deprotonated carboxylate-COO- (DeP) systems, retain comparatively compact conformations. Sugar-functionalized dendrimers ({beta}-galactose-terminated PETIM and D-glucose-terminated PAMAM) are most hydrated and structurally rigid, whereas amine-terminated dendrimers exhibit the greatest conformational dynamics. PAMAM dendrimers with -NH2, -NH3+, and -COO- terminal groups are generally more hydrated than their PETIM counterparts. However, {beta}-galactose-terminated PETIM dendrimers are more hydrophilic than D-glucose-terminated PAMAM dendrimers. N-core PETIM dendrimers also adopt more compact and spherical conformations than equivalent O-core PETIM dendrimers. Drug-binding MD simulations show that curcumin binding is dominated by van der Waals (vdW) interactions, whereas doxorubicin complexation is primarily driven by electrostatic interactions. Among the investigated surface functionalities, -NH2 (NP), -NH3+ (P), -COOH (NP), and -COO- (DeP) terminations exhibit the most favourable drug-binding characteristics. Except for deprotonated carboxylate systems, curcumin binds more strongly than doxorubicin. Overall, these findings establish molecular-level relationships between surface functionality, protonation state, dendrimer architecture, and drug-binding behaviour, providing design principles for pH-responsive dendrimer nanocarriers with enhanced drug-loading and controlled-release performance. TOC O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=75 SRC="FIGDIR/small/742721v1_ufig1.gif" ALT="Figure 1"> View larger version (35K): org.highwire.dtl.DTLVardef@119bf29org.highwire.dtl.DTLVardef@1554d86org.highwire.dtl.DTLVardef@154a254org.highwire.dtl.DTLVardef@16d5c5b_HPS_FORMAT_FIGEXP M_FIG C_FIG

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Lipid anchor engineering controls cell-penetrating arginine-rich peptide presentation for efficient siEGFR liposomal delivery to triple-negative breast cancer cells

Bialecki, P.; Braccia, S.; Makowski, T.; Piorecka, K.; Falcigno, L.; Bellavita, R.; Falanga, A.; Bryszewska, M.; Robaszkiewicz, A.; Galdiero, S.; Pedziwiatr-Werbicka, E.

2026-08-25 biophysics 10.64898/2026.08.20.745705 medRxiv
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Understanding the physicochemical factors that govern siRNA nanocarrier assembly is essential for the rational design of effective delivery systems. By optimizing various lipid compositions, cholesterol content and PEG length we created a peptide-functionalized cationic liposomal platform made of DOPE/TAP lipids with cholesterol-anchored nona-arginine (R9-Chol) for siRNA complexation, intracellular transport and effective silencing of the target EGFR gene. Analysis of {zeta}-potential and dynamic light scattering allowed to rationally design formulation of stable, monodisperse nanoscale lipoplexes with a positive surface charge. With fluorescence polarization, circular dichroism and agarose gel electrophoresis we found an optimal siRNA:liposome complexation ratio of 1:77, which protected siRNA from ribonuclease-mediated degradation. Morphological imaging confirmed a shift from discrete vesicular structures to organized multilamellar lipoplexes, consistent with electrostatically driven self-assembly. In cellular studies, the optimized nanocarrier promoted efficient uptake of fluorescent siRNA in MDA-MB-231 cells and achieved functional delivery of anti-EGFR, leading to substantially reduced expression of the target gene at both transcript and protein levels. This work offers mechanistic understanding of peptide-assisted lipid:siRNA assembly and positions R9-functionalized DOPE/TAP liposomes as a promising platform for siRNA delivery.

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Lipid Headgroup Hydration Regulates Distinct Remodeling of the Membrane Interface by Polyethylene Glycol and Dextran

Bhunia, S.; Lin, J.; Nykypanchuk, D.; Sun, S.

2026-07-22 biophysics 10.64898/2026.07.18.739366 medRxiv
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Water-soluble polymers commonly interact with cell membranes, but their interactions are poorly understood. Here, we investigate polyethylene glycol (PEG) and dextran (DEX) interactions with different model lipid membranes. Using total internal reflection fluorescence microscopy, we observe that PEG and DEX trigger strikingly different membrane responses - DEX induces extensive membrane remodeling, including localized multilamellar domain formation, while PEG does not. Combining fluorescence spectroscopy, fluorescence anisotropy, and vibrational sum frequency spectroscopy, we show that DEX perturbs lipid headgroup hydration by displacing interfacial water with minimal effects on lipid packing, while PEG largely preserves this hydration layer. We find that membrane binding affinity alone does not determine the extent to which hydrophilic polymers perturb membrane structure and interfacial properties; and that lipid headgroup hydration, rather than lipid charge, is a general regulator of hydrophilic polymer-membrane interactions. This work gives mechanistic insights into how neutral polymers interact with cells and vesicles, with relevance to cell biology and drug delivery. O_FIG O_LINKSMALLFIG WIDTH=169 HEIGHT=200 SRC="FIGDIR/small/739366v1_ufig1.gif" ALT="Figure 1"> View larger version (42K): org.highwire.dtl.DTLVardef@1d1c6corg.highwire.dtl.DTLVardef@135361corg.highwire.dtl.DTLVardef@73970corg.highwire.dtl.DTLVardef@c19615_HPS_FORMAT_FIGEXP M_FIG C_FIG

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3D Printed X-ray Compatible Microfluidics for Online Characterization of Hexosomes: A Synchrotron SAXS-on-Chip Study with Molecular Dynamics Insights

Babaie, Z.; Valerio, M.; Schuhmann, F.; Dimaki, M.; Rezaei, B.; Pezeshkian, W.; Keller, S. S.; Svendsen, W. E.; Souza, P. C. T. d.; Yaghmur, A.

2026-09-01 biophysics 10.64898/2026.08.31.748233 medRxiv
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Online structural characterization during microfluidic lipid self-assembly is important for understanding and controlling the formation of nonlamellar liquid crystalline nanodispersions. Here, we report a 3D-printed, X-ray-compatible hydrodynamic flow-focusing microfluidic chip with variable channel dimensions, integrated with synchrotron small-angle X-ray scattering (SAXS), for position-resolved SAXS-on-chip monitoring of Ca2+-triggered hexosome formation. Hexosomes were produced under continuous flow by mixing ethanolic solutions of docosahexaenoic acid monoglyceride (MAG-DHA), the negatively charged phosphatidylglycerol DOPG, and -tocopherol with Ca2+-containing PIPES buffer. Online SAXS-on-chip measurements detected three Bragg reflections characteristic of the internal inverse hexagonal (H2) phase on a tens-of-milliseconds residence-time scale, revealing rapid structural evolution during microfluidic mixing. Complementary ex situ SAXS identified the DOPG/Ca2+ molar ratio as a key parameter modulating the direct vesicle-to-hexosome transformation and the compactness of the internal H2 nanostructures. Dynamic light scattering showed that the flow-rate ratio modulated nanoparticle size, yielding hexosomes with mean hydrodynamic diameters in the range of approximately 120-175 nm and polydispersity index values down to 0.14 at a total flow rate of 200 {micro}L min-1. Cryo-TEM revealed coexistence of hexosomes and vesicular nanostructures, highlighting morphological heterogeneity, while Coarse-Grained Molecular Dynamics simulations supported a central role of Ca2+-DOPG association in promoting a direct lamellar-H2 phase transition. Overall, this work shows that 3D-printed SAXS-compatible microfluidics can integrate continuous production with online structural characterization, providing a basis for future formulation and process optimization of drug-loaded cubosomes, hexosomes, and related nonlamellar liquid crystalline nanodispersions.

8
A Bottom-Up Approach to Fungal Plasma Membrane Model: Lipid Mixture Design and Biophysical-Mechanical Characterization

Kucharski, M.; Kubicka, Z.; Drabik, D.

2026-08-17 biophysics 10.64898/2026.08.08.743690 medRxiv
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The rising incidence of invasive fungal diseases emphasizes the need for novel therapeutic strategies, including membrane-targeting antifungal agents, which require representative lipid models for detailed molecular-level studies. In this work, we propose a consensus quinary fungal plasma membrane model based on lipidomic literature data, specifically PC:PE:PI:PA:PS phospholipid model with ratio of 44:29:13:8:6. Using a bottom-up approach, we characterized the biophysical properties of this system - with particular emphasis on mechanical parameters such as bending rigidity and area compressibility - by combining molecular dynamics simulations with experimental flicker-noise and ATR-FTIR spectroscopies. Furthermore, we investigated the effect of two key non-phospholipid components: ergosterol and triacylglycerols. Biophysical analysis revealed that DPPI and its specific interactions with DSPS induced the most substantial deviations in baseline membrane parameters, particularly area per lipid, membrane thickness, and area compressibility, while DSPS influenced bending rigidity change and DLiPA primarily affected lipid packing defects. In addition, ergosterol and TGs were found to influence all of the investigated parameters to different degree. Notably, the overall biophysical profile of the proposed FPMM closely mimicked that of natural vesicles derived from yeast lipid extracts, establishing this model may provide a reliable platform for studying fungal membrane biophysics and lipid-targeting interactions.

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The comparative strengths and limitations of Nile Red and 9-(dicyanovinyl)-julolidine (DCVJ) fluorescent dyes for detecting microplastics and nanoplastics

Wallner, M.; Diaz, J.; Labbe, A. B.; Jacob, J. J.; Williams, Q.; Paytan, A.; Bagshaw, C. R.

2026-08-07 biophysics 10.64898/2026.08.03.742549 medRxiv
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Nile Red is widely used for the detection of microplastics because its fluorescence emission is sensitive to local polarity and can distinguish hydrophobic plastics from hydrophilic ones. The fluorescence of the molecular rotor, 9-(dicyanovinyl)-julolidine (DCVJ) is less sensitive to polarity but more to viscosity. DCVJ is less widely used for microplastic analysis, although it has been used to detect polystyrene nanobeads. Here, we compared these dyes with standard samples from the Hawaii Pacific University Polymer Kit 1.0 and confirmed that Nile Red, in general, was better for the detection and identification of microplastics. Fluorescence emission was analyzed using photography, as well as spectroscopy. The color and peak emission wavelength of some stained environmental microplastics were affected by additives. Raman spectroscopy was used to confirm the chemical identity of such samples. Although DCVJ emits green fluorescence on binding to some microplastics, a peak at 620 nm has been reported with polystyrene nanobeads, attributed to dimer/excimer formation. We confirmed this property and directly observed diffraction-limited spots using fluorescence microscopy, attributed to single or just a few nanobeads. Nile Red also stains polystyrene nanobeads and gave stronger signals than with DCVJ, but Nile Red was prone to false positives due to dye aggregation in aqueous solutions.

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RNA post hoc loading into empty lipid nanoparticles occurs on millisecond timescales during turbulent mixing

Aljabbari, A.; Binion, H.; Dasaro, S.; Mitra, H.; Bethiana, T.; Harris, G.; Zhou, X.; Baghbanbashi, M.; Barrio-Zhang, A.; Perez Herrera, D.; Figueiredo, M.; Wilson, B.; Ardekani, A. M.; Ristroph, K.

2026-06-27 bioengineering 10.64898/2026.06.26.732967 medRxiv
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Lipid nanoparticles (LNPs) are conventionally produced through mixing of lipids dissolved in ethanol against a buffer containing RNA. An alternative strategy offering improved cold-chain stability involves formulating empty LNPs (eLNPs), removing ethanol, and post hoc loading (PHL) RNA into the aqueous eLNPs. The kinetics of this approach remain unknown. Here, we employ a flowthrough small-angle X-ray scattering (SAXS) setup based on a confined impinging jets (CIJ) mixer to probe PHL kinetics. We show that RNA PHL in a scalable CIJ mixer is efficient and reproducible, and that SAXS data confirms that this process concludes within ~12 ms under favorable conditions in rapid turbulent micromixing, suggesting a diffusion-limited aggregation mechanism. Favorable conditions were identified as an acidic pH 5.5 buffer combined with turbulent CIJ mixing. In contrast, PHL performed with a neutral pH 7.4 buffer using a CIJ mixer or under laminar flow with a pH 5.5 buffer resulted in inefficient PHL.

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Surface-specific film assembly of a Vibrio cholerae adhesin peptide modulated by environmental salts

Zhai, S.; Jaramillo Pinto, D. R.; Mendoza, N. L.; Adewole, A.; Heufner, B.; Merg, A. D.; Corrales, T. P.; Yan, J.; Andresen Eguiluz, R. C.

2026-06-23 biophysics 10.64898/2026.06.21.733527 medRxiv
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Underwater adhesion research increasingly draws on bioinspired systems to uncover the molecular mechanisms that enable strong interfacial binding in aqueous environments. The biofilm adhesin Bap1 from Vibrio cholerae contains a short peptide motif, SYWFFGWHTK (CP), which exhibits exceptional adhesive performance, surpassing mussel foot protein mfp5 under comparable conditions. Despite its promise, the roles of ionic environments and aggregation behavior in governing CP adhesion remain unclear. In this study, we investigate how ion identity influences CP aggregation, film formation, and interfacial properties. Using dynamic light scattering, we identify the formation of micron-scale assemblies of aggregated molecular clusters (AAMCs), with size distributions modulated by salt type. Quartz crystal microbalance with dissipation and liquid atomic force microscopy reveal that CP film formation is both surface- and ion-dependent. On gold substrates, AAMCs preferentially adsorb and collapse into rigid, smooth nanofilms, consistent with hydrophobic-driven compaction. In contrast, silicate surfaces inhibit such collapse, yielding distinct morphologies and interfacial energetics. These findings demonstrate that surface chemistry and ionic conditions jointly regulate peptide aggregation and adhesion. This work provides mechanistic insight into hydrophobic-rich peptide systems and informs the rational design of next-generation wet adhesives, with broader implications for biomaterials and peptide-based formulations. GRAPHICAL ABSTRACT O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=130 SRC="FIGDIR/small/733527v1_ufig1.gif" ALT="Figure 1"> View larger version (40K): org.highwire.dtl.DTLVardef@1bd012aorg.highwire.dtl.DTLVardef@1977892org.highwire.dtl.DTLVardef@16cf79borg.highwire.dtl.DTLVardef@f405bf_HPS_FORMAT_FIGEXP M_FIG C_FIG

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Critical Process Steps for Mechanical Agitation Driven Coated Nanobubble Self Assembly

Kosmides, T.; Wegierak, D.; Khan, A. H.; Bederman, I.; Kim, T. K. J.; Exner, A. A.

2026-07-21 bioengineering 10.64898/2026.07.20.736752 medRxiv
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The term nanobubble (NB) includes a wide range of gas core, submicron particles. A subgroup of NBs consists of phospholipid-shelled (or coated) nanoparticles stabilizing a perfluorocarbon gas core which have gained recent interest as ultrasound (US) contrast agents. Several methods are available to produce coated NBs. Among these, amalgamation driven self-assembly has been the most utilized. Amalgamation (also referred to as mechanical agitation) is a simple technique currently used for production of commercial and clinically relevant microbubble suspensions. When combined with size-isolation steps, it can also generate submicron NB suspensions with a narrow size distribution. While this technique has been used extensively, no prior work has systematically examined the critical manufacturing parameters needed to produce the optimal coated NB formulation. In this work, we investigate how the precursor lipid dispersion, perfluorocarbon gas to lipid ratio, and pressurized size isolation affect the formation and size isolation of stable, uniform NBs. Results show that the precursor lipid dispersions exhibiting a monomodal size distribution produced the most stable NBs. Additionally, perfluorocarbon volume in excess of lipid dispersion volume is required to form high concentration, stable NBs. Finally, pressurized size isolation resulted in high concentration, US stable NBs. These findings establish the understanding of the key process parameters which affect uniform size and stable NB production via mechanical amalgamation.

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Electroadhesion of polymer networks by polycation interfacial bridging: sticky electrophoresis, ionic complexation, and chain entanglement

Ying, B.; Yu, K.-H.; Yang, S.; Yang, J.

2026-06-10 bioengineering 10.64898/2026.06.05.730541 medRxiv
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An e-GLUE is a polymer network containing interpenetrating polycations, which can bond the anionic network of mucosa through interfacial polycation bridging under an electric field. Such an electroadhesion involves electrophoresis of polycations, ionic complexation between polycations and the anionic network, and polycation-network entanglement, yet their quantitative understanding is lacking. Here, we formulate a theoretical model to describe electroadhesion of polymer networks by polycation interfacial bridging. We use a diffusion-drift model coupled with a Bell-like field-dependent chain friction to describe the sticky electrophoresis of polycations in an anionic sea. The formation of ionic bonds is determined by local availability of cations and anions over the penetration depth. To debond, a force must either pull polycations out from the e-GLUE network or first dissociate them from ionic complexes and then pull out from the anionic network. We model chain pullout from the bulk networks to the interface as a viscous drag against water. The adhesion strength is calculated by summing the debonding force for each polycation per unit area across all chains. Our model quantitatively links electric field strength, applied duration, polycation chain length, and cation concentration to polycation electrophoresis kinetics, ionic bond formation, and adhesion strength. We further conduct electroadhesion tests, and our model predicts well with the experimental data. Lastly, we discuss the use of the model to guide the e-GLUE design. TOC graphic O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=90 SRC="FIGDIR/small/730541v1_ufig1.gif" ALT="Figure 1"> View larger version (45K): org.highwire.dtl.DTLVardef@16524c6org.highwire.dtl.DTLVardef@15163aeorg.highwire.dtl.DTLVardef@673949org.highwire.dtl.DTLVardef@e207a0_HPS_FORMAT_FIGEXP M_FIG C_FIG For Table of Contents use only

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Programmable Assembly of DNA Tetrahedra Bearing Atomically Precise Gold Nanoclusters: Stoichiometric Control and Molecular-Level Characterization

MANCEAU, M.; ALHALABI, A.; SAINT-PIERRE, C.; BOERI-ERBA, E.; LE GUEVEL, X.; GASPARUTTO, D.

2026-06-09 biophysics 10.64898/2026.06.06.730428 medRxiv
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Atomically precise gold nanoclusters (AuNCs) are ultra-small particles composed of ten to hundreds gold atoms and exhibit unique photophysical properties. Significant progress has been made in tuning and extending their luminescence in the near-infrared window through the design of AuNC assemblies. Herein, we report a straightforward method for synthesizing highly pure, programmable DNA tetrahedra functionalized with a controlled number of AuNCs (from one up to four AuNCs). Using ligand exchange chemistry, AuNCs bearing a single grafted ssDNA onto them were produced. These constructs then served as building blocks for synthesizing tetrahedra through DNA hybridization. Products obtained at each stage of the synthesis were thoroughly characterized using a range of complementary technics. Notably, mass spectrometry in native mode provided novel insights into the accurate composition and stoichiometry of these architectures. This study paves the way for the synthesis and the characterization of a variety of new three-dimensional, DNA-guided AuNC assemblies that may serve as powerful theranostics and biophotonic tools.

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Snake Venom Fluidic Properties and Design of Venom Mimics as Rheological Surrogates

Forstner, M.; Holding, M. L.; Li, Y.; Moore, T. Y.; Pena-Francesch, A.

2026-06-22 bioengineering 10.64898/2026.06.19.733472 medRxiv
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Snake venom composition and its contribution to toxic effects has been heavily researched, but there is a comparative lack of information on venoms fluidic properties and their relationship with fang morphology during the envenomation process. Understanding how venom flows through a fang can shed light on bite site dynamics and potentially explain bite symptoms. In this article we first conduct a broad comparative test of the rheological properties of venom from thirteen snake species, including multiple viperid and elapid snake species, revealing a shear-thinning non-Newtonian flow behavior in all studied species. However, we have not observed strong phylogenetic signal in venom fluidic properties, suggesting that flow properties may vary independently of evolutionary relationships between snake species. Second, we demonstrate that snake venoms fluidic properties can be modeled by other inexpensive, safe, and abundant shear-thinning surrogate fluids. We found that aqueous solutions of bovine serum albumin protein and xanthan gum are useful venom mimics, matching the rheological behavior of venoms from the studied snake species across a range of relevant shear rates. We further evaluated the performance of these snake venom mimics in a simulated venom delivery system, showing good and robust mimetic control of the flow properties as a function of applied pressure. By elucidating the fluidic properties of snake venom and providing a non-toxic, scalable surrogate fluid model to be used in further studies, we provide the biomedical, toxicology, evolutionary biology communities with a tool to study envenomation physics in an inexpensive and safe fashion. We suggest it is possible to design species-specific venom mimics that facilitate research on the biomechanics and fluid dynamics of venom delivery via snake bites, and inform the design of bioinspired puncture and injection devices.

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Cardiolipin increases the peak of reversible traveling H+ fronts at the membrane surface

Baroudi, N.-B.; Kruglik, S.; Lopez, P.; Haliyo, S.; Genet, S.

2026-08-19 biophysics 10.64898/2026.08.15.744977 medRxiv
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Cardiolipin (CL) is a phospholipid found in the inner mitochondrial membrane (IMM) where it increases the efficiency of ATP regeneration. We have investigated the hypothesis that this increase may result in part from CL concentrating H+ at the IMM surface through electrostatic interactions as the CL polar head is a dianion at physiological pH. To this aim, we compared the concentrations and movements of H+ at the surface of giant planar phosphatidylcholine (PC) membranes and 20% CL enriched PC membranes by recording their surface pH with the membrane-grafted pH probe fluorescein DHPE. CL enrichment of the membranes increased their surface H+ activity by a ~4 factor. Moreover, we observed non-gaussian spatial H+ concentration profiles with distance from a point H+ source with both PC and CL membranes suggesting that both lipids also induce interactions between probe molecules. A whole bath pH variation revealed that these interactions allow the traveling of reversible acidification fronts with constant speed over the membrane between high and low pH states. A reaction-diffusion model of these observations suggests that membranes support these fronts through a mechanism of autocatalytic (de)protonation of the membrane surface. In mitochondria, these fronts would result in transitions between high and low pH states, the low one having a larger H+ concentration in CL-enriched regions of the IMM. Such an increase at the inner leaflet of the IMM may increase efficiency of the respiratory chain whereas the increase at the outer leaflet may boost the ATP synthase rate.

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Effects of Cholesterol on Nanodisc Formation and Magnetic Alignment in DMPC and Glycyrrhizic Acid Systems Probed by 31P and 14N Solid-State NMR

Rokonujjaman, M.; Wi, S.; Ramamoorthy, A.

2026-08-29 biophysics 10.64898/2026.08.26.747314 medRxiv
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Nanodiscs and bicelles are widely used as membrane mimetics for structural studies of membrane-associated systems. Studies have reported that their magnetic alignment behavior and phase stability are highly sensitive to composition and temperature. In this study, we systematically investigate the effects of cholesterol on bicelle formation and magnetic alignment in DMPC + 0.2 glycyrrhizic acid (GA) systems using a combined 31P and 14N solid-state NMR experimental and simulation-based approach. Temperature dependent 31P NMR spectra reveal a clear transition from vesicle dominant to aligned bicelles/nanodsics phase, while 1N quadrupolar splitting and lineshape analysis provides quantitative insights into heterogeneous lipid bilayer populations, distinguishing large aligned nanodiscs (B(L)), small nanodiscs (B(S)), and isotropic/random components (B(R)). A strong correlation is observed between the 31P derived bicelle fraction and the 14N B(L) population, confirming that macroscopic alignment in the presence of an external magnetic field directly reflects the growth of large, well-ordered nanodiscs. Cholesterol is found to play a critical dual role by modulating membrane order and curvature. At low cholesterol concentration (0 to 5 mole percent), nanodiscs alignment occurs gradually with increasing temperature, while at higher cholesterol concentration (15 to 25 mole percent), the alignment is delayed and accompanied by broader spectral features, indicating structural heterogeneity. Notably, 10 mole percent cholesterol consistently provides the optimal balance, enabling efficient temperature dependent conversion to aligned bicelles while maintaining high B(L) populations (about 70-80 percentage) and minimal isotropic fractions. In contrast, higher cholesterol maintains significant B(S) and B(R) populations, even at elevated temperature. The 14N quadrupolar coupling (Cq is approximately 8.5 to 9.2 kHz for aligned nanodiscs) remains nearly invariant across compositions, showing that cholesterol does not change local headgroup dynamics but instead redistributes lipid populations. These findings establish a combined 31P and 14N solid -state NMR approach provides a valuable platform for quantitatively correlating membrane structure, dynamics, and alignment, offering practical guidelines for optimizing bicelle systems for high resolution solid-state NMR studies of membrane associated biomolecules.

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Production of membrane-embedded Bcl-2 proteins - Use of cell-free synthesis in continuous exchange for co-translational insertion of Bcl-2 proteins in lipid bilayer nanodiscs

Kervadec, J.; Rouchidane Eyitayo, A.; Gonzalez, C.; Maurice, T.; Bernardeau, K.; Manon, S.; Priault, M.

2026-08-19 biochemistry 10.64898/2026.08.15.745005 medRxiv
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The BCL-2 family proteins are key regulators of apoptosis, functionally divided in pro- and anti-apoptotic proteins, with a third group acting as regulators. Their ability to partition between the cytosol and intra-cellular membranes (essentially the mitochondrial outer membrane) is a primary regulator of their functions. A second contributor is their ability to form homotypic complexes (pro-pro or anti-anti) or heterotypic complexes (pro-anti). If the structures of monomeric cytosolic members have largely been characterized, the functional and structural study of membrane-embedded proteins remains incomplete. Unlocking this knowledge is expected to enable evaluating new therapeutic strategies to either activate pro-apoptotic members, or inactivate anti-apoptotic ones. Lipid bilayer nanodiscs and improved cell-free protein synthesis have provided the technical breakthrough to achieve the description at the atomic level of conformations and higher order assemblies of these proteins in their membrane-associated states. Here we describe detailed and straightforward protocols for generating nanodisc-inserted members of the Bcl-2 family, through the example of anti-apoptotic Bcl-xL, and pro-apoptotic Bax and Bak. Full-length, untagged proteins are expressed from bacterial extracts in the presence of pre-assembled nanodiscs to allow co/post-translational insertion in lipid bilayer, followed by affinity chromatography purification. A more detailed characterization is presented for Bak, to exemplify structural and mechanistic studies enabled by these methods. Graphical abstract O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=139 SRC="FIGDIR/small/745005v1_ufig1.gif" ALT="Figure 1"> View larger version (35K): org.highwire.dtl.DTLVardef@5da1d1org.highwire.dtl.DTLVardef@12aca96org.highwire.dtl.DTLVardef@5a3e73org.highwire.dtl.DTLVardef@ba009d_HPS_FORMAT_FIGEXP M_FIG C_FIG

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Electrochemical Deformation of PEDOT:PSS Drives Mechanosensitive Cell Activation

Mueller, A. F.; Wasner, F.; Crisp, R. W.; Bachmann, J.; Duran-Toro, V.; Gregurec, D.

2026-08-13 bioengineering 10.64898/2026.08.12.744395 medRxiv
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Conducting polymers are widely used in bioelectronic interfaces because of their mixed ionic-electronic conductivity, mechanical compliance, and compatibility with biological systems. However, their electrochemically driven structural dynamics have received little attention as a mechanism for mechanical cell stimulation. Here, we show that electrochemical actuation of poly(3,4-ethylenedioxythiophene):polystyrenesulfonate (PEDOT:PSS) generates mechanical cues capable of activating endogenous mechanosensitive pathways in HEK293T cells. Transparent PEDOT:PSS films deposited on ITO exhibited a heterogeneous granular morphology and underwent potential-dependent microscopic deformation during electrochemical modulation. Direct optical tracking revealed displacement of the polymer boundary, with structural changes occurring preferentially in polymer-dense regions and propagating toward the film edge. When HEK293T cells were cultured directly on PEDOT:PSS, repeated electrochemical stimulation at -240 mV produced reproducible intracellular Ca2+ responses. Pharmacological inhibition with GsMTx4 attenuated the calcium response, whereas blockade of voltage-gated sodium channels with tetrodotoxin largely preserved it, supporting the involvement of mechanosensitive pathways in the cellular response. These findings identify PEDOT:PSS as an electromechanical biointerface in which electrochemical modulation can introduce a mechanical component alongside the established electrical function of the interface. This mechanical contribution should therefore be considered when interpreting cellular responses to conducting polymer- based electrical stimulation and provides a basis for engineering bioelectronic interfaces that deliberately couple electrical control with mechanotransduction.

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Post-loading ribonucleic acid into lipid nanoparticle carriers

Bizmark, N.; Amelemah, D. F.; Nayagam, S.; Subraveti, S. N.; Kim, B.; Salvati Manni, L.; Wood, K.; Yepuri, N. R.; Moir, M.; Cagnes, M.; Zang, N.; Warr, G. G.; Prudhomme, R. K.

2026-07-22 bioengineering 10.64898/2026.07.21.737377 medRxiv
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Lipid nanoparticles (LNPs) are effective carriers for messenger ribonucleic acid (mRNA) delivery in vaccines; however, their reliance on extreme cold-chain storage limits global manufacturing and distribution. Conventional LNPs are formed by rapidly mixing four lipids with mRNA through electrostatic interactions between cationic ionizable lipids and negatively charged nucleic acids, facilitating nucleation and precipitation of mRNA-loaded LNPs. However, this binding also accelerates mRNA degradation, requiring stringent cold storage which limits widespread vaccine deployment. To overcome this limitation, we introduce a post-loading strategy in which empty LNPs (eLNPs) are first fabricated and RNA is subsequently loaded at a later stage. Using scalable confined impinging jet (CIJ) mixers, we optimized pH, buffer composition, lipid concentration, and ethanol content to produce colloidally stable eLNPs. Controlled adjustment of ethanol content and pH enabled efficient incorporation of four distinct RNA payloads while maintaining loaded LNP diameters below 100 nm. Post-loaded LNPs demonstrated mRNA delivery efficiencies in HeLa cells comparable to those of conventionally co-precipitated LNPs. Consistent size distributions and zeta potentials further confirmed comparable surface properties. Structural characterization by x-ray and neutron scattering revealed similar internal architectures for post-loaded and co-precipitated LNPs without compromising RNA loading efficiency. Together, these results demonstrate equivalent cellular delivery performance between the two formulations. This post-loading approach enables decentralized assembly of mRNA LNPs at the point of administration, with both eLNPs and mRNA stored under mild refrigeration, thereby improving vaccine accessibility. Moreover, eLNPs function as modular laboratory reagents, facilitating the translation of mRNA research toward clinical applications.