Back

Multiscale Analysis of Cellular Senescence through Ripley's Functions and Functional Statistics.

Verrier, C.; Dabo-Niang, s.; Dehennaut, V.

2026-07-03 bioinformatics
10.64898/2026.06.29.734207 bioRxiv
Show abstract

Cellular senescence is a heterogeneous and evolving process involved in development, tissue repair, aging, and age-related diseases. Although senescence burden in tissues has been widely studied, its spatial organization remains poorly understood, particularly in vivo. Senescence encompasses a spectrum of distinct states, with cells differing in molecular signatures, secretory activity, persistence, and interactions with their microenvironment depending on the inducing stimulus and tissue context. This heterogeneity suggests that spatial organization may reflect underlying processes such as tissue repair, regeneration, or maladaptive remodeling, providing insight into senescence function and its pathological roles. Here, we propose a quantitative, multi-scale framework to characterize the spatial organization of senescent cell populations in post-infarction mouse hearts. By combining a senescence-signature scoring strategy with spatial statistical methods and functional data analysis, we assess whether senescent cells exhibit clustered or dispersed patterns, and how these spatial distributions evolve over time following infarction. This approach aims to provide new insights into the spatiotemporal dynamics of senescence in vivo and to identify spatial features that may inform therapeutic strategies targeting age-related and tissue repair-associated pathologies.

Matching journals

The top 7 journals account for 50% of the predicted probability mass.

1
PLOS Computational Biology
1863 papers in training set
Top 2%
13.1%
2
Aging Cell
165 papers in training set
Top 0.4%
9.9%
3
Nature Communications
5641 papers in training set
Top 17%
9.9%
4
Advanced Science
286 papers in training set
Top 1%
5.6%
5
Communications Biology
993 papers in training set
Top 2%
5.2%
6
Journal of Theoretical Biology
162 papers in training set
Top 0.6%
4.9%
7
Proceedings of the National Academy of Sciences
2444 papers in training set
Top 12%
4.4%
50% of probability mass above
8
GeroScience
109 papers in training set
Top 0.6%
4.1%
9
eLife
5828 papers in training set
Top 33%
3.3%
10
Scientific Reports
3612 papers in training set
Top 38%
2.8%
11
Cell Reports
1498 papers in training set
Top 15%
2.4%
12
Autophagy
39 papers in training set
Top 0.2%
2.4%
13
iScience
1154 papers in training set
Top 16%
1.8%
14
Acta Biomaterialia
92 papers in training set
Top 0.7%
1.8%
15
npj Aging
22 papers in training set
Top 0.3%
1.8%
16
PLOS ONE
5266 papers in training set
Top 48%
1.8%
17
PLOS Genetics
862 papers in training set
Top 8%
1.5%
18
Briefings in Bioinformatics
354 papers in training set
Top 5%
1.1%
19
Aging
75 papers in training set
Top 1%
1.1%
20
Science Advances
1243 papers in training set
Top 29%
0.9%
21
Cell Systems
201 papers in training set
Top 4%
0.9%
22
Computers in Biology and Medicine
128 papers in training set
Top 4%
0.9%
23
Nature Aging
60 papers in training set
Top 2%
0.9%
24
International Journal of Molecular Sciences
494 papers in training set
Top 17%
0.6%
25
Nucleic Acids Research
1281 papers in training set
Top 14%
0.6%