Back

High Pathogenicity Avian Influenza Virus (HPAIV) H5N1 clade 2.3.4.4b recovered from a kelp gull (Larus dominicanus) in the South Shetland Islands, Antarctica

Ogrzewalska, M.; Pereira, E. C.; Vanstreels, R. E. T.; Campista, E.; Correa Junior, L.; Macedo, L.; Appolinario, L. R.; Brandao, M. L.; Vilela, R.; Degrave, W.; Motta, F.; Siqueira, M.; Resende, P. C.

2024-12-29 molecular biology
10.1101/2024.12.29.630510 bioRxiv
Show abstract

Whole-genome analysis of the earliest-detected High Pathogenicity Avian Influenza Virus (HPAIV) H5N1 clade 2.3.4.4b detected in Hannah Point, Antarctica (January 2024) reveals close relatedness to strains that circulated in pinnipeds and seabirds along the Atlantic coast of South America during the second half of 2023.

Matching journals

The top 5 journals account for 50% of the predicted probability mass.

1
Journal of Travel Medicine
◐ 18 papers in training set
Top 0.1%
23.5%
Similar papers in this journal
2
Scientific Reports
○ 3612 papers in training set
Top 2%
13.5%
Similar papers in this journal
3
Viruses
○ 332 papers in training set
Top 0.8%
5.8%
Similar papers in this journal
4
Emerging Infectious Diseases
● 105 papers in training set
Top 0.2%
5.8%
Similar papers in this journal
5
F1000Research
○ 88 papers in training set
Top 0.3%
4.2%
Similar papers in this journal
50% of probability mass above
6
Emerging Microbes & Infections
○ 74 papers in training set
Top 0.3%
3.7%
7
Virus Evolution
◐ 155 papers in training set
Top 0.5%
3.4%
8
Nature Communications
○ 5641 papers in training set
Top 34%
3.3%
9
iScience
○ 1154 papers in training set
Top 16%
1.8%
10
Access Microbiology
● 25 papers in training set
Top 0.2%
1.8%
11
Microorganisms
○ 106 papers in training set
Top 1%
1.8%
12
Current Biology
○ 665 papers in training set
Top 7%
1.5%
13
Frontiers in Cellular and Infection Microbiology
○ 109 papers in training set
Top 2%
1.5%
14
Pathogens
○ 56 papers in training set
Top 0.7%
1.4%
15
Microbiology Spectrum
● 469 papers in training set
Top 8%
1.2%
16
Frontiers in Microbiology
○ 427 papers in training set
Top 6%
1.2%
17
Communications Biology
○ 993 papers in training set
Top 20%
1.2%
18
PeerJ
◐ 308 papers in training set
Top 8%
1.1%
19
PLOS ONE
● 5266 papers in training set
Top 55%
1.0%
20
eLife
● 5828 papers in training set
Top 65%
0.9%
21
Heliyon
○ 152 papers in training set
Top 7%
0.9%
22
Virology Journal
○ 32 papers in training set
Top 0.7%
0.9%
23
Nature Microbiology
○ 155 papers in training set
Top 3%
0.6%
24
Journal of Medical Virology
○ 140 papers in training set
Top 3%
0.6%
25
Royal Society Open Science
● 214 papers in training set
Top 7%
0.6%
26
Medical Research Archives
● 11 papers in training set
Top 0.5%
0.6%
27
Wellcome Open Research
○ 67 papers in training set
Top 1%
0.6%
28
Life
○ 29 papers in training set
Top 1.0%
0.6%
29
Microbiome
○ 154 papers in training set
Top 3%
0.5%
30
Infection, Genetics and Evolution
○ 42 papers in training set
Top 1%
0.5%

"Similar papers" are the closest papers from that journal in the model's embedding space. They show what the match is built on, but the ranking comes mostly from a classifier over the whole training set, not from these examples alone.