Back

Facilitating Gene Editing in Human Lymphoma Cells Using Murine Ecotropic γ-Retroviruses

Kumar, M.; Gentner-Goebel, E.; Maity, P. C.

2024-12-03 molecular biology
10.1101/2024.12.03.626526 bioRxiv
Show abstract

Genetic modifications using CRISPR-Cas9 have revolutionized cancer research and other pre-clinical studies. Exceptionally, these efficient tools are inadequate in a few disease models and cell lines due to the aberrant differentiation states and the accumulation of excessive somatic mutations that compromise the robustness of viral gene delivery and stable transduction. A couple of B lymphoma cell lines fall into this category where lentiviral transfection becomes inefficient and exhibits variable efficiency. Additionally, lentiviral delivery requires high biosafety levels. To address this challenge, we have developed a two-step strategy that supports CRISPR-Cas9 through lentivirus and murine ecotropic {gamma}-retrovirus. By engineering B lymphoma cell lines to express Cas9 and mCat-1, a specific receptor for ecotropic retroviruses, we enable efficient and safe gene editing through ecotropic {gamma}-retrovirus. We demonstrate the efficacy of this method by generating IgM-deficient B lymphoma cell lines. This innovative approach simplifies protocols, enhances accessibility, and paves the way for standardized gene manipulation of B cell lymphoma models for molecular cell biology research.

Matching journals

The top 4 journals account for 50% of the predicted probability mass.

1
Current Protocols
15 papers in training set
Top 0.1%
23.3%
2
Journal of Visualized Experiments
34 papers in training set
Top 0.1%
15.7%
3
PLOS ONE
5266 papers in training set
Top 18%
10.1%
4
STAR Protocols
18 papers in training set
Top 0.1%
9.3%
50% of probability mass above
5
Viruses
332 papers in training set
Top 0.7%
6.5%
6
Molecular Therapy - Methods & Clinical Development
38 papers in training set
Top 0.1%
5.1%
7
Biology Methods and Protocols
61 papers in training set
Top 0.5%
2.2%
8
Journal of Neuroscience Methods
122 papers in training set
Top 0.9%
2.1%
9
Virology
61 papers in training set
Top 0.6%
1.8%
10
Antiviral Research
50 papers in training set
Top 0.4%
1.8%
11
Vaccines
198 papers in training set
Top 2%
1.6%
12
Nature Protocols
33 papers in training set
Top 0.3%
1.4%
13
Frontiers in Bioengineering and Biotechnology
98 papers in training set
Top 1%
1.2%
14
Virology Journal
32 papers in training set
Top 0.5%
1.2%
15
Methods
34 papers in training set
Top 0.6%
0.9%
16
Journal of Virology
499 papers in training set
Top 3%
0.9%
17
ACS Synthetic Biology
287 papers in training set
Top 2%
0.6%
18
F1000Research
88 papers in training set
Top 4%
0.6%
19
Journal of Biotechnology
11 papers in training set
Top 0.3%
0.6%
20
Molecular Therapy Methods & Clinical Development
13 papers in training set
Top 0.2%
0.6%
21
Journal of General Virology
53 papers in training set
Top 1.0%
0.6%
22
Cells
249 papers in training set
Top 9%
0.5%
23
Biology Open
156 papers in training set
Top 5%
0.5%
24
eLife
5828 papers in training set
Top 71%
0.5%
25
PLOS Pathogens
820 papers in training set
Top 11%
0.5%
26
Nucleic Acids Research
1281 papers in training set
Top 16%
0.5%
27
Antibody Therapeutics
16 papers in training set
Top 0.4%
0.5%