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Machine learning to construct an mRPS risk prognostic model for directing immunotherapy in patients with breast cancer based on the mCAF signature genes

Shen, H.; Huang, B.; Chen, Q.; Ye, Z.; Zeng, L.; Huang, C.; Xie, Y.; Zhang, R.

2023-06-11 genomics
10.1101/2023.06.08.544261 bioRxiv
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Withdrawal statementThe authors have withdrawn their manuscript owing to the identification of inadequate informed consent procedures in this research. Therefore, the authors do not wish this work to be cited as reference for the project. If you have any questions, please contact the corresponding author.

Matching journals

The top 10 journals account for 50% of the predicted probability mass.

1
PLOS ONE
● 5266 papers in training set
Top 18%
9.8%
Similar papers in this journal
2
Cancers
○ 213 papers in training set
Top 0.4%
9.7%
Similar papers in this journal
3
Annals of Oncology
○ 14 papers in training set
Top 0.1%
5.5%
Similar papers in this journal
4
BMC Medical Genomics
○ 50 papers in training set
Top 0.1%
4.3%
Similar papers in this journal
5
Scientific Reports
○ 3612 papers in training set
Top 25%
4.1%
6
Frontiers in Oncology
○ 103 papers in training set
Top 0.9%
4.1%
Similar papers in this journal
7
Archives of Clinical and Biomedical Research
○ 28 papers in training set
Top 0.1%
4.1%
8
Frontiers in Genetics
○ 230 papers in training set
Top 0.8%
4.1%
9
PeerJ
◐ 308 papers in training set
Top 2%
3.5%
10
BMC Cancer
○ 67 papers in training set
Top 0.6%
3.3%
50% of probability mass above
11
Cancer Medicine
○ 26 papers in training set
Top 0.2%
3.2%
12
Biology
○ 45 papers in training set
Top 0.1%
2.5%
13
Frontiers in Immunology
○ 638 papers in training set
Top 5%
2.4%
14
PLOS Computational Biology
● 1863 papers in training set
Top 13%
1.9%
15
British Journal of Cancer
○ 49 papers in training set
Top 0.7%
1.7%
16
International Journal of Cancer
○ 49 papers in training set
Top 0.6%
1.7%
17
European Radiology
○ 15 papers in training set
Top 0.4%
1.7%
18
Genomics
○ 64 papers in training set
Top 0.8%
1.7%
19
Oncotarget
○ 18 papers in training set
Top 0.2%
1.3%
20
Computational and Structural Biotechnology Journal
● 242 papers in training set
Top 5%
1.1%
21
Nature Communications
○ 5641 papers in training set
Top 56%
0.8%
22
eLife
● 5828 papers in training set
Top 66%
0.8%
23
Genomics, Proteomics & Bioinformatics
188 papers in training set
Top 2%
0.8%
24
Heliyon
○ 152 papers in training set
Top 8%
0.8%
25
BioData Mining
○ 22 papers in training set
Top 0.6%
0.8%
26
npj Breast Cancer
○ 23 papers in training set
Top 0.4%
0.8%
27
Molecular Oncology
○ 55 papers in training set
Top 2%
0.6%
28
Frontiers in Public Health
○ 148 papers in training set
Top 7%
0.6%
29
Medicine
○ 31 papers in training set
Top 2%
0.6%
30
Frontiers in Cellular and Infection Microbiology
○ 109 papers in training set
Top 4%
0.6%

"Similar papers" are the closest papers from that journal in the model's embedding space. They show what the match is built on, but the ranking comes mostly from a classifier over the whole training set, not from these examples alone.