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A quantitative analysis of the similarities and differences of the HIV/FIV gag genome

Siu, C.; Horn, M.; Cheng, X. W.

2022-01-17 microbiology
10.1101/2022.01.17.476666 bioRxiv
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This manuscript has been withdrawn following erroneous duplicate posting. The appropriate version is available at 10.1101/2022.01.09.475545.

Matching journals

The top 12 journals account for 50% of the predicted probability mass.

1
PLOS ONE
● 5266 papers in training set
Top 15%
12.0%
Similar papers in this journal
2
Journal of Medical Virology
○ 140 papers in training set
Top 0.2%
6.8%
Similar papers in this journal
3
F1000Research
○ 88 papers in training set
Top 0.2%
5.2%
Similar papers in this journal
4
Viruses
○ 332 papers in training set
Top 1%
4.1%
Similar papers in this journal
5
Scientific Reports
○ 3612 papers in training set
Top 27%
3.5%
Similar papers in this journal
6
Access Microbiology
● 25 papers in training set
Top 0.1%
3.3%
7
Frontiers in Microbiology
○ 427 papers in training set
Top 3%
3.3%
8
Heliyon
○ 152 papers in training set
Top 1%
3.3%
9
PeerJ
◐ 308 papers in training set
Top 3%
2.8%
10
Virology
○ 61 papers in training set
Top 0.4%
2.8%
11
Gene
○ 46 papers in training set
Top 0.4%
2.8%
12
Virology Journal
○ 32 papers in training set
Top 0.2%
2.4%
50% of probability mass above
13
Virus Research
○ 37 papers in training set
Top 0.2%
2.4%
14
Cureus
○ 68 papers in training set
Top 2%
2.1%
15
Gene Reports
○ 14 papers in training set
Top 0.2%
2.1%
16
Journal of Virological Methods
○ 37 papers in training set
Top 0.2%
1.7%
17
Frontiers in Cellular and Infection Microbiology
○ 109 papers in training set
Top 1%
1.7%
18
Genomics
○ 64 papers in training set
Top 0.9%
1.5%
19
BMC Research Notes
○ 33 papers in training set
Top 0.4%
1.5%
20
Journal of Clinical Virology
○ 63 papers in training set
Top 0.5%
1.3%
21
Infection, Genetics and Evolution
○ 42 papers in training set
Top 0.6%
1.1%
22
Bioscience Reports
● 27 papers in training set
Top 0.9%
1.1%
23
Frontiers in Virology
○ 15 papers in training set
Top 0.1%
1.1%
24
Vaccines
○ 198 papers in training set
Top 3%
1.1%
25
Current Protocols
○ 15 papers in training set
Top 0.2%
1.1%
26
Archives of Clinical and Biomedical Research
○ 28 papers in training set
Top 0.9%
1.0%
27
Archives of Virology
○ 15 papers in training set
Top 0.2%
1.0%
28
Science of The Total Environment
○ 186 papers in training set
Top 3%
0.9%
29
Journal of Evolutionary Biology
◐ 110 papers in training set
Top 1%
0.9%
30
JMIRx Med
◐ 32 papers in training set
Top 2%
0.9%

"Similar papers" are the closest papers from that journal in the model's embedding space. They show what the match is built on, but the ranking comes mostly from a classifier over the whole training set, not from these examples alone.