Traffic

In yeast and humans, the conserved DENN-domain (Differentially Expressed in Normal and Neoplastic tissue) protein Avl9 is thought to play roles in membrane traffic and secretion, but its precise function remains poorly defined. Since DENN-containing proteins are associated with Rab GTPase function, we sought to understand Avl9 function in the context of Rab regulation. Here, we show that Avl9 localizes to peripheral punctae that are consistent with secretory vesicles. Moreover, we demonstrate genetic interactions and co-localization between Avl9 and numerous Rabs in the secretory and endosomal pathways, suggesting a potential function at the interface of secretion and recycling. Consistent with this role, avl9{Delta} results in defective recycling of the endosomal cargo Snc1 but does not alter plasma membrane delivery of an endocytosis-defective Snc1EN- mutant, suggesting that Avl9 is not directly involved in secretory traffic from the TGN to the plasma membrane. The avl9{Delta} recycling defect is exacerbated by the additional loss of RCY1 or SNX4, but not VPS35. Each of these three genes contributes to a distinct endosomal recycling pathway, indicating that Avl9 acts in conjunction with multiple recycling pathways. Summary StatementIn this study, Rioux et al. describe a role for the DENN domain protein Avl9, previously thought to regulate secretion, as a novel factor involved in recycling of cargos from endosomal compartments.

Kinesin-3 motor proteins are increasingly recognized for their important roles in cilia. The mammalian kinesin-3 motor KIF13B moves bidirectionally in primary cilia and regulates ciliary content, but its relationship to the intraflagellar transport (IFT) machinery is unclear. Here, we combine quantitative live-cell imaging with a new kymograph analysis based on dynamic mode decomposition (DMD) to separate mobile from immobile protein populations in primary cilia. This approach simplifies extraction of molecular velocities from kymographs and reveals that a KIF13B deletion mutant retaining only the motor domain and part of the forkhead-associated domain does not alter steady-state IFT velocity or frequency. However, when retrograde dynein-2 function is inhibited by Ciliobrevin D, both anterograde and retrograde IFT velocities decrease in parental cells, as expected, but remain unchanged in KIF13B mutant cells. Structured illumination, confocal, and STED microscopy further show that KIF13B localizes to the ciliary membrane and concentrates at the periciliary membrane region and the centriolar subdistal appendages, below the distal appendage marker FBF1. Our improved kymograph approach provides new insight into KIF13B ciliary function and simplifies the quantitative analysis of ciliary protein transport.

Extracellular vesicles are key intercellular messengers that modulate the function of target cells by carrying effectors, either at their surface or in their lumen. In the latter case, their action depends on the ability to deliver their content into the cytosol of target cells. How efficiently EVs deliver their content upon interaction with their target cell is thus a central question for understanding the functional impact of this mode of action. To address this question, signal-driven bimolecular interactions between two partners located respectively in the EV lumen and the target cell cytosol have become a widely used strategy to detect the cytosolic delivery EV content. However, the detection of cytosolic delivery with these assays was often tributary to the artificial enhancement of the fusion between EV and cell membranes, through for instance VSV-G fusogenic protein expression. Here we provide a robust and quantitative LUCiferase-based complementation assay (HiBiT/LgBiT), to quantify the Internalization and cytosolic Delivery of EV content: LUCID-EV. By optimizing the signal-to-noise ratio of the assay, the method for loading HiBiT fragment into EVs (fusion to a lipid-binding domain rather than to tetraspanins), and the intracellular position of LgBiT (associated to membranes), we could quantify cytosolic delivery from various non-VSV-G-expressing EVs into target immune dendritic cells. Importantly, this delivery did not involve the acidic late endosomes environment required for VSV-G-dependent EV cytosolic delivery. The limited efficacy of the process highlights the need for highly sensitive assays like the one described here. Further development of the LUCID-EV assay could help identifying EV/target cells pairs with enhanced cytosolic delivery properties and characterize the cellular route for delivery.

Extracellular vesicles (EVs) mediate critical intercellular communication, yet the molecular mechanisms that govern multivesicular endosome (MVE) fusion with the plasma membrane and exosome release remain poorly understood. Phospholipase D1 (PLD1) produces phosphatidic acid (PA), a lipid involved in membrane remodeling, but when and how PLD1 and PA act during exosome secretion has not been defined. Here, we used immunofluorescence and total internal reflection fluorescence microscopy (TIRFM) to track individual CD63+ MVEs together with fluorescent PLD1 or a PA reporter (GFP-PASS) in A549 cells. PLD1 localized to CD63+ MVEs during visiting, docking, and fusion. Inhibition or knockdown of PLD1 significantly reduced MVE fusion frequency and decreased the number of secreted small EVs, while causing only a modest reduction in vesicle availability at the plasma membrane. PLD1 inhibition also increased the number of membrane-proximal lysosomes, suggesting that MVEs are diverted toward degradation when fusion is impaired. Meanwhile, PA dynamics were stage-specific: PA remained low on visiting vesicles, gradually accumulated during docking, and exhibited a sharp spike followed by loss during fusion. PA has been reported to stabilize negative curvature and potentially play a role during fusion. To test whether PA influences fusion pore behavior, we quantified CD63 decay duration (t1/2) for individual fusion events. K-means clustering revealed that vesicles with longer decay durations had higher PA levels, whereas short-decay events showed minimal PA. The PA intensity correlated positively with decay duration, while cytosolic GFP did not, indicating a specific relationship between PA and exosome release rates. Furthermore, pharmacological activation of PLD1 increased the proportion of long-decay events. Together, these findings demonstrate that PLD1-generated PA regulates MVE fate at two levels: it promotes the docking-to-fusion transition and prolongs exosome release. This identifies a lipid-based mechanism that controls both the efficiency and kinetics of exosome secretion. SIGNIFICANCE STATEMENTExosome release is essential for cell-cell communication in processes such as development, immunity, and cancer. However, the mechanism that determines whether a multivesicular endosome fuses with the plasma membrane to release exosome cargo remains unclear. We identified a lipid-based mechanism that regulates both fusion and the rate of content release. We show that phospholipase D1 (PLD1) and its product phosphatidic acid (PA) act at late stages of exosome secretion: PLD1 promotes the docking-to-fusion transition and PA levels quantitatively correlate with content release rate, suggesting that PA stabilizes the pore. These findings demonstrate that lipids can control secretion frequency and kinetics, providing a new framework for understanding and modulating exosome output.

At the early endosome, cargos are sorted into subdomains; receptors destined for recycling to the plasma membrane are sorted into tubulovesicular structures that undergo fission and release cargo-laden vesicles that traffic along microtubules. Although branched actin has been implicated in the establishment/maintenance of endosomal membrane subdomains, its role in cargo segregation, fission, and recycling has not been extensively studied. Using inhibitors of formin-and ARP2/3-mediated actin assembly, we show that branched actin, but not linear actin, is required for endosome fission and receptor recycling. To examine the spatial relationship between actin and cargo, we transfected cells with constitutively active RAB5 Q79L to generate enlarged endosomes and demonstrated that internalized transferrin localized to discrete endosomal regions adjacent to branched actin. ARP2/3 inhibition disrupted this organization, resulting in broader cargo distribution on the endosomal membrane and coalescence of degradative and retrieval subdomains. Consistent with impaired endosomal sorting and fission, branched actin inhibition led to cargo accumulation. Our findings identify ARP2/3-mediated branched actin as a key regulator of cargo segregation, subdomain maintenance, and fission at the early endosome.

Gap junction communication is reduced during mitosis as the junction protein connexin-43 (Cx43) is redistributed from gap junction plaques on the plasma membrane to cytoplasmic annular vesicles and actin-based mitotic nanotubes that transiently connect mitotic cells to neighboring cells. However, the dynamic details of Cx43 redistribution during cell entry into and exit from mitosis, and the roles of mitotic nanotubes and associated Cx43 in intercellular communication, remain poorly understood. Here, using confocal live-cell imaging, we show that as cells enter mitosis, plaque-derived Cx43 structures are transferred to mitotic nanotubes. Over time, these structures fragment and migrate along the length of the nanotubes, either being transferred to the cytoplasm of adjacent cells or being positioned at the nanotube ends where they could potentially enable communication. Functionally, mitotic nanotubes indeed facilitate gap junction-dependent intercellular communication, though at reduced rates compared interphase cells. Interestingly, knockdown of Cx43 resulted in impaired nanotube formation and intercellular communication while inhibition of Rho kinase (ROCK) with Y-27632 prevented mitotic cell rounding and nanotube elongation, and increased cell-cell communication during mitosis, suggesting that nanotube function is influenced by Cx43 expression and trafficking as well as actin remodeling via ROCK. Overall, these findings provide valuable insights into the mechanisms that regulate Cx43 and mitotic nanotube dynamics and reveal a novel role for mitotic nanotubes in facilitating cell-cell communication during cell division.

The HIV-1 assembly process is driven by the structural protein Gag, which forms small cytosolic oligomers that are later trafficked to the cell membrane. While Gag alone is sufficient to drive particle formation, the incorporation of GagPol, a polyprotein comprising Gag and viral enzymes, is essential for productive infection. Maintenance of the proper Gag:GagPol ratio is essential for infectivity. Yet, the mechanisms regulating their cytosolic interactions remain incompletely understood, in part because most studies rely on ensemble biochemical assays that hide cell-to-cell heterogeneity and lack spatial and temporal resolution. To overcome these limitations and investigate the dynamics of GagPol at the molecule level, we systematically tested different approaches to fluorescently label it. We successfully produced two functional fluorescent GagPol variants: one single-labeled GagPol, and a second double-labeled variant with a fluorescent protein added within Gag, that allows concurrent visualization of Gag and GagPol. These labeled versions, in combination with the use of raster image (cross-) correlation spectroscopy, enabled the quantification of Gag and GagPol relative concentrations and intermolecular interactions at the single-cell level. Overall, these variants set the stage for in-depth investigations of GagPol during HIV assembly providing insights into cytoplasmic trafficking, particle assembly, and the kinetics of these processes.

SUN5 is a testis-specific SUN domain protein essential for connecting the sperm tail to the nucleus. However, until now, its precise localization, intracellular dynamics, and membrane topology during spermiogenesis have remained controversial. To address these discrepancies, we applied ultrastructure expansion microscopy (U-ExM) to systematically track SUN5 redistribution throughout spermiogenesis. This approach enabled a detailed reconstruction of SUN5 localization across developmental stages and revealed previously undescribed enrichment at the perinuclear ring (PNR) and the microtubule manchette, suggesting secondary functions at the PNR or a potential role in intra-manchette transport (IMT). Complementary immunogold labelling using the Tokuyasu method, together with biochemical assays, demonstrated that SUN5 adopts a membrane localization and topology consistent with that of classical SUN domain proteins. Quantitative measurements of the nuclear envelope architecture at the head-to-tail coupling apparatus (HTCA) further enabled us to present a refined structural model of SUN5 positioning at the head-tail junction. Overall, our findings resolve previous discrepancies in the field and provide a coherent framework for understanding SUN5 organization and its role in mammalian spermiogenesis. Summary StatementIn the presented study, we analyzed the dynamic redistribution of SUN5 during mammalian spermiogenesis and resolved its topology in developing spermatids to gain insights concerning the proteins molecular function in head-tail coupling.

African trypanosomes employ specialised mechanisms of membrane trafficking as a key strategy to persist in both the mammalian host and insect vector. Their survival and pathogenicity rely on the continuous synthesis and surface delivery of extremely abundant surface coat proteins, imposing an extraordinary biosynthetic burden on the secretory pathway. Despite this, the luminal proteome of the T. brucei endoplasmic reticulum (ER) and Golgi apparatus remains incompletely characterised. Here, we exploit TurboID proximity biotinylation, using the abundant ER chaperone BiP (Binding-immunoglobulin protein) as luminal bait to map the ER proteome in bloodstream and procyclic lifecycle stages of Trypanosoma brucei. Comparison with BiPN, a truncated secretory form of BiP that transits the Golgi, provides differential compartmental labelling, together identifying 366 (BiP) and 428 (BiPN) proximity partners respectively and encompassing established ER quality control machinery, secretory cargo, and Golgi proteins. Quantitative ranking of BiP labelling intensity identifies a cohort of candidate BiP interactors: the most strongly enriched is Tb927.5.1160, a protein sharing structural homology with the mammalian BiP nucleotide exchange inhibitor MANF (mesencephalic astrocyte-derived neurotrophic factor). Endogenous mNeonGreen tagging confirms ER localisation of TbMANF in both life cycle stages, and reciprocal manipulation of its abundance by RNAi and inducible expression produces opposing shifts in cellular sensitivity to ER stress. These data are consistent with a role in regulating BiP ATPase cycling in an organism that, unlike yeast and mammals, lacks a canonical unfolded protein response, making TbMANF the first candidate regulator of BiP activity identified in kinetoplastids. Finally, TurboID proximity labelling anchored at the inner face of the nuclear pore via NUP65 extends our endomembrane map to the inner nuclear membrane, identifying candidate proteins of this specialised ER-continuous domain. AUTHOR SUMMARYAfrican sleeping sickness is caused by Trypanosoma brucei, a parasite that survives in the mammalian bloodstream by constantly renewing its protective protein coat. To synthesise and export this surface coat, the parasite relies on two intracellular compartments, the endoplasmic reticulum (ER) and the Golgi apparatus, which function as a quality control and sorting factory for proteins entering the secretory pathway. However, the identity of the proteins that populate these compartments in blood-stage parasites, and that maintain functioning under stress conditions, has remained poorly mapped. Here, we used an enzyme-based proximity labelling strategy that identifies neighbouring proteins in live cells without disturbing their targeting signals, generating a comprehensive protein inventory of both compartments across the two main T. brucei lifecycle stages. Among the most strongly labelled proteins was Tb927.5.1160, a protein structurally related to a mammalian regulator of the master ER chaperone BiP. Reducing or increasing the abundance of Tb927.5.1160 in parasites produced opposite changes in ER stress tolerance, identifying it as a candidate modulator of ER homeostasis in a lineage that regulates protein quality control through mechanisms distinct from those operating in yeast or human cells. Together, our findings provide a new molecular resource for understanding how T. brucei sustains secretory pathway function under the biosynthetic demands of mammalian and insect host infection.

Protein subcellular localisation is informative for understanding potential protein function, particularly in highly structured unicellular eukaryotes. Microscopy is especially powerful for interrogating localisation, providing high resolution single cell data about where a protein resides. We previously generated the TrypTag dataset - a genome-wide protein localisation resource for the human unicellular parasite Trypanosoma brucei using fluorescent protein tagging. This is a puissant dataset due to its scale: Originally captured with high content image analysis in mind, it is a formidable resource for machine learning or artificial intelligence tool development and testing. Here, we describe a Python module for programmatic access to this data rich resource. Images of each tagged cell line, together with segmented cell masks, can be accessed arbitrarily by gene ID and tagging terminus, the database can be searched by protein localisation, and tools are provided to assist foundational image analysis of individual T. brucei cell cycle stage and morphology. We stress-tested this tool by using it to examine a key feature of T. brucei morphogenesis during division: The old and newly formed flagellum and associated organelles tend to have different protein compositions, and using the TrypTag toolkit we show that there is extensive age-based differential content of these organelles while the daughter nuclei completely lack such asymmetry.

PLA2G6-associated neurodegeneration (PLAN) is a rare, progressive neurological disorder caused by mutations in the PLA2G6 gene, which encodes the calcium-independent phospholipase A2 enzyme essential for phospholipid remodeling and membrane lipid homeostasis through the Lands cycle. Although mitochondrial dysfunction has been implicated in PLAN, the mechanisms linking PLA2G6 loss to mitochondrial degeneration across tissues, age, and sex remain poorly defined. Drosophila melanogaster (fruit flies) contains the human ortholog of the PLA2G6 gene, called iPLA2-VIA, homozygous mutation of which shows neurodegenerative phenotypes, including severely reduced lifespan, loss of locomotory ability, reduced fecundity, and mitochondrial structural and functional impairment at an early age. Thus, we use the Drosophila melanogaster iPLA2-VIA homozygous mutant flies to systematically examine mitochondrial structure, abundance, function, and the altered gene expression of the genes associated with the mitochondrial biogenesis cycle. Transmission electron microscopy revealed mitochondrial ultrastructural abnormalities in the brain, thorax, and ovary of iPLA2-VIA mutant flies, including disrupted cristae, abnormal mitochondrial morphology, and abnormal membrane integrity. Quantitative analysis demonstrated a significant, age-dependent reduction in mitochondrial number across multiple tissues in both sexes. Consistent with these structural defects, mutant flies exhibited reduced ATP production and altered reactive oxygen species (ROS) levels in a tissue-, age-, and sex-specific manner, indicating impaired mitochondrial bioenergetic capacity. At the transcriptional level, loss of function of iPLA2-VIA significantly altered the expression of genes governing mitochondrial biogenesis and dynamics. Key biogenesis regulators, including mTOR and PGC-1, were downregulated in young mutants, while genes involved in mitochondrial fusion and fission (Opa1, Mfn2, Drp1, and Fis1) showed selective, age- and sex-dependent dysregulation. Collectively, our findings demonstrate that iPLA2-VIA is essential for maintaining mitochondrial integrity, abundance, and bioenergetic function. This work establishes a mechanistic framework linking disrupted phospholipid remodeling to mitochondrial degeneration in PLAN. It highlights Drosophila as a powerful model for dissecting age- and sex-dependent mitochondrial pathology in neurodegenerative disease.

Cell and tissue-specific transcriptomic profiling of Caenorhabditis elegans is commonly achieved by fluorescence tagging or staining of targeted cell populations, often followed by fluorescence-activated cell sorting (FACS) and RNA sequencing. However, these approaches typically require separate strains for each labeled population, increasing labor and experimental variability while limiting direct comparison of multiple tissues within the same genetic background. To address this limitation and establish proof of concept, we engineered CELeidoscope, a multicolored C. elegans strain that enables spectral sorting of multiple major cell types within a single strain population. Strain construction was carried out using a high-throughput screening method that reduces the labor and plastic costs associated with transgene integration and outcrossing. Four primary tissues (body muscle, neurons, intestinal, and pharyngeal muscle cells) were tagged with spectrally distinct fluorescent proteins, allowing compatibility with viability and nucleic acid dyes. Using spectral flow cytometry, dissociated CELeidoscope cell suspensions could be sorted based on their spectral profiles, with cell recovery rates approximating the expected cell counts in whole organisms. Transcriptomic analysis of the sorted cell populations further validated the identity of the sorted populations, with recovered cells exhibiting gene expression signatures consistent with their intended cell and tissue identities. Together, these results establish CELeidoscope as a versatile tool for multiplexed cell-type isolation in C. elegans, providing a framework for tissue-specific analyses from a common strain background.

Membrane trafficking is essential to maintain cellular homeostasis, enabling cells and organelles to exchange molecular components via vesicle transport. Therefore, it is tightly regulated, including by RAB GTPases. Among these, RAB21, which is primarily associated with early endosomes, plays a central role in coordinating endocytosis, sorting, and degradation. Like other RABs, it cycles between GTP- and GDP-bound forms. Although three specific guanine exchange factors (GEFs) for RAB21 have been identified, surprisingly, no GTPase-activating proteins (GAPs) have been found to directly modulate RAB21. Here, we describe a genetic modifier screen in Drosophila that identified Tre/Bub2/Cdc16 (TBC) domain family member 25 (TBC1D25) as a potential negative regulator of RAB21. We confirmed the RAB21-TBC1D25 interaction using co-immunoprecipitation and proximity ligation assays and further demonstrated that their association depends on the catalytic activity of TBC1D25. Genetic interaction studies revealed a functional link between TBC1D25 and RAB21 in autophagy and cargo sorting. Collectively, our results indicate that TBC1D25 negatively regulates RAB21, potentially by serving as a RAB21-specific GAP.

Connectomics has become essential for the study of brain function, yet for most research groups it remains prohibitively costly in imaging time, data storage, and analysis. Here, we present an imaging, processing, and analysis pipeline for multi-resolution image acquisition and circuit reconstruction. Applied to the central complex of six insect species, we were able to obtain global projectomes at cellular resolution (40-50 nm) with embedded local connectomes describing key computational compartments at synaptic resolution (8-12 nm). We provide standardized protocols for volume EM sample preparation, image acquisition and image alignment, combined with existing methods for {micro}CT block trimming, automatic segmentation, synapse detection, collaborative skeleton tracing with CATMAID, and segmentation proofreading via CAVE. We validated our workflow by reconstructing head direction cells across all six insect species, which revealed deep conservation at the level of cell types, cell numbers and projection patterns, while also revealing circuit level specializations. Overall, our pipeline democratizes comparative connectomics by making this method accessible for small research groups with modest resources.

Mechanistic accounts of brain function require a common coordinate system in which structural, molecular and functional data can be integrated and compared across individuals. The teleost genus Danionella is unique among vertebrates in retaining lifelong transparency, allowing non-invasive, cellular-resolution functional imaging across the entire adult brain. A reference atlas in this model would therefore provide a strong foundation for causal and comparative circuit studies. Here we present an integrated anatomical, molecular and functional reference brain for adult Danionella cerebrum as a standardised atlas resource. Using a transgenic nuclear fluorescence marker, whole-mount tissue clearing and high-resolution two-photon microscopy, we generated an average reference brain from 21 adult fish to create a common coordinate system. Whole-mount in situ hybridisation for 29 neuronal markers, complemented by tract annotation from structural imaging and tracer injections, enabled us to segment 203 neuroanatomical regions. We found pronounced sex differences in telencephalic, cerebellar and hindbrain nuclei, revealing sexually dimorphic organisation across multiple brain regions. All data and segmentations are made openly accessible, providing a community resource for studies of circuit function, molecular makeup and sexual dimorphism in an optically accessible adult vertebrate brain.

Endocytosis of the epidermal growth factor receptor (EGFR) is considered a key regulator of the receptor signaling activity. However, the molecular mechanisms underlying EGFR endocytosis are incompletely understood. Although ligand-induced ubiquitination of EGFR is known to promote its endocytic trafficking, the importance of EGFR ubiquitination in clathrin-mediated endocytosis, the primary physiological route of EGFR internalization, remains debated, and the relative contributions of ubiquitination-dependent and - independent mechanisms are not defined. Hence, we used NX-1013, a novel small-molecule inhibitor of the CBLB E3 ubiquitin ligase, to dissect the role of EGFR ubiquitination in its endocytic trafficking and signaling. Strikingly, brief treatment with NX-1013 completely abolished EGF-induced EGFR ubiquitination, demonstrating that this process is exclusively mediated by the closely related CBLB and CBL ligases. NX-1013 inhibited clathrin-mediated internalization of activated EGFR by 60-70%. The remaining, ubiquitination-independent internalization required EGFR kinase activity, was highly clathrin-dependent, and was significantly impaired by depletion of the AP-2 clathrin adaptor complex. Interestingly, inhibition of CBLs and EGFR endocytosis by NX-1013 did not affect major downstream signaling pathways in human oral squamous cell carcinoma cells, with the exception of Rac1 activation and EGFR-dependent cell migration, both of which were suppressed. Significance StatementCBL E3 ubiquitin ligases mediate ubiquitin conjugation of EGFR but their functional contributions to EGFR endocytic trafficking and signaling remain poorly defined. Here, we describe a newly developed small-molecule inhibitor of CBL proteins that potently blocks EGFR ubiquitination. This tool allowed us to dissect ubiquitination-dependent versus - independent components of the clathrin-mediated endocytosis and ligand-induced downregulation of EGFR. Strikingly, while inhibition of CBLs suppressed EGFR-driven cell motility signaling, it spared other major downstream pathways in EGFR-dependent human oral squamous cell carcinoma cells. These findings establish acute inhibition of CBLs as a powerful approach to interrogate ubiquitin-mediated receptor regulation and highlight its potential for therapeutic targeting of cancer cell migration.

Golgi Reassembly and Stacking Proteins (GRASP) have been associated with Golgi-ribbon structure and unconventional vesicular protein secretion. In performing these functions, GRASPs consistently interact with membranes. The presence of lipid modifications, such as myristoylation, is a crucial consideration for obtaining detailed information about the interactions between GRASPs and membranes. Nonetheless, it has been overlooked in the literature so far. Here, we describe a reconstitution protocol for myristoylated human GRASP65 and GRASP55 in lipid model membranes, enabling investigation of their interactions using techniques ranging from structural characterization to spectroscopy and microscopy. Our results showed that myristoyl-anchored GRASPs can influence membrane dynamics, suggesting a possible role for their disordered SPR domain in this interaction.

The correct assembly of ribosomes is essential for viability and faithful gene expression. In eukaryotic cells, the pre-40S and pre-60S ribosomal subunits are largely pre-assembled in the nucleolus before they are exported to the cytoplasm for final maturation. Although most ribosomal proteins of the large subunit are loaded onto pre-60S particles in the early nucleolar steps, a few, including eL24, are loaded in the cytoplasm. eL24 is thought to recruit the zinc-finger protein Rei1 (ZNF622 in humans). In yeast, Rei1 has a paralog, Reh1. While we and others have previously shown that Rei1 facilitates the removal of Arx1, Rei1 and Reh1 appear to have an additional unknown function. To identify this function, we first examined the protein composition of pre-60S subunits isolated from rei1{Delta} reh1{Delta} mutant cells and found that these subunits were specifically defective for eL24. However, the absence of eL24 did not impair Rei1 binding to pre-60S. Moreover, overexpression of eL24 suppressed the growth defect of the double mutant. As an alternative approach to understanding the function of Rei1 and Reh1, we screened for bypass suppressors of the growth defect of rei1{Delta} reh1{Delta} cells. We identified mutations in the genes coding for ribosomal protein uL3, the GTPase Lsg1 and the protein phosphatase Ppq1. Importantly, these suppressors all partially reversed the eL24 loading defect of rei1{Delta} reh1{Delta} cells. Based on these results, we propose a revised order of cytoplasmic assembly events where Rei1 and Reh1 facilitate the recruitment of eL24 to the pre-60S particle.

Autophagy involves the rapid growth of phagophores through membrane addition. This growth is triggered by vesicles containing the Atg9A protein. However, Atg9A is not incorporated into mature autophagosomes. We now demonstrate that Dynamin-2 (Dnm2) colocalizes with the BAR domain protein Endophilin-B1 (EndoB1/Bif-1/SH3GLB1) and other autophagy proteins when autophagy is induced. Our data suggest that Atg9A is retrieved from phagophores via fission, with Dnm2 acting as the membrane scission protein. Blocking Atg9A recycling, either by mutating Dnm2, using RNA interference, or applying chemical inhibitors, results in Atg9A remaining in autophagosomes and being degraded during autophagy. Overall, these findings provide new insights into the roles of membrane-scission proteins in autophagy.

Primary cilia exhibit conserved organization and contain structural and functional domains of unique molecular composition. The inversin compartment (InvC), which is found in the proximal ciliary segment of a subset of vertebrate and invertebrate cell types, concentrates different classes of signaling molecules. Mutations in genes encoding resident proteins of the InvC manifest in ciliopathies, highlighting the importance of the InvC in cilia biology. We previously showed that a chaperone of G proteins RIC-8 localizes to the InvC of C. elegans channel cilia; however, the mechanisms that regulate RIC-8 targeting to this ciliary sub-domain or RIC-8 function in the InvC remain unknown. Here, we build on our prior work to demonstrate that RIC-8 becomes restricted to the InvC during larval development and show that, while the RVxP motif and intact transition zone are required for its proper intraciliary distribution, RIC-8 localization to the cilium depends on intraflagellar transport. Using the ASH neuron as a model, we establish that RIC-8 functions in channel cilia to modulate chemosensory responses. Finally, we demonstrate that human RIC8A and RIC8B proteins are required for ciliogenesis in RPE-1 cells. Collectively, our results define ciliary trafficking mechanisms and novel cell-specific functions for a highly conserved signaling protein. AbbreviationsInvC, WT, TZ, IFT, PCMC, KD, RT, s