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Agronomy

MDPI AG

Preprints posted in the last 90 days, ranked by how well they match Agronomy's content profile, based on 18 papers previously published here. The average preprint has a 0.03% match score for this journal, so anything above that is already an above-average fit.

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Introducing PHJ Media: A Unique Machine Learning -Driven Basal Formulation to Overcome Recalcitrance for Multi-Genotype Micropropagation of Cannabis sativa L.

Pepe, M.; Hesami, M.; Jones, M.

2026-07-15 plant biology 10.64898/2026.07.14.738465 medRxiv
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Applications of tissue culture are critical for Cannabis sativa L. (cannabis), supporting clonal propagation, germplasm preservation, pathogen elimination, among other biotechnological applications. However, extensive genetic diversity associated with cannabis results in highly variable responses to in vitro conditioning, and no consensus basal media formulation exists to support reproducible micropropagation across genotypes. To address these limitations, a hybridized ensemble-NSGA-II approach was employed for concurrent optimization of individual media components to create a species specific, cultivar inclusive basal salt formulation for cannabis micropropagation. The resulting PHJ media represents a unique formulation that overcomes recalcitrance across a wide array of cannabis cultivars, facilitating improved growth and uniformity for the nine cultivars used in its development and validation. These results remain consistent from explant initiation through multiple rounds of subculture. The ability of PHJ to overcome genotypic recalcitrance is telling of its potential applicability with an array of plant species beyond cannabis. Additionally, robust performance both with and without plant growth regulators underscores the plausible use of PHJ for diverse applications beyond standard micropropagation. Ultimately, this cultivar-inclusive basal medium demonstrates utility for both scientific research and industrial-scale operations.

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Genome-Wide Markers Predict Metribuzin Tolerance in Southern Soft Red Winter Wheat

Sellani, J.; Anzueto, H.; Arcenaux, K.; Price, P. T.; Brown-Guedira, G.; Harrison, S.; DeWitt, N.

2026-07-03 genomics 10.64898/2026.06.28.733875 medRxiv
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Metribuzin is a versatile herbicide effective against various annual grasses and broadleaf weeds found in wheat fields. However, it can cause foliar damage to wheat, impacting plant health and yield. A clearer understanding of the genetic architecture associated with metribuzin tolerance is necessary to guide marker-based breeding strategies. This study evaluated 351 historic Gulf Atlantic Wheat Nursery (GAWN) wheat breeding lines representative of southern US soft red winter wheat (SRWW) germplasm. Field trials were conducted at Winnsboro (WN) and Baton Rouge (BR), Louisiana, in 2016 and 2017. Metribuzin was applied at specific growth stages[DN1.1], and tolerance was assessed based on visual foliar damage. Genomic data from 6,252 filtered single nucleotide polymorphism (SNP) markers were used to estimate narrow-sense heritability, conduct genome-wide association (GWAS), and assess genomic prediction accuracy using genomic best linear unbiased prediction (GBLUP). Broad-sense heritability ranged from 0.54 to 0.69 within environments and reached 0.77 across environments, while narrow-sense heritability ranged from 0.35 to 0.47, indicating moderate additive genetic control. No SNP surpassed the significance threshold, but genomic prediction (GP) showed moderate to strong predictive ability (PA) across environments, with the highest accuracy (r = 0.62) observed between BR17 and WN17. These results indicate that metribuzin tolerance in SRWW is primarily controlled by multiple small-effect loci and that GS provides a more effective breeding strategy than marker-assisted selection for improving tolerance in southern wheat germplasm.

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Identification of a suitable substrate for the growth and development of Hibiscus sabdariffa L.

EFFA, B. W. E.; DEMIKOYO KANGHOU, D.; GUIBINGA, S. M.

2026-07-29 plant biology 10.64898/2026.07.27.741135 medRxiv
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Hibiscus sabdariffa L. var. sabdariffa is a plant prized in many tropical countries for its leaves and calyxes. Consequently, H. sabdariffa plays an important socio-economic role for many communities. Our study aimed to assess the effect of different substrates on the growth and development of H. sabdariffa. Three combinations were created by mixing black soil with potting soil, resulting in three substrates or treatments in addition to the control treatment (black soil). Each seeded substrate had eight replicates, resulting in 32 experimental units, arranged in a completely randomised design. The treatments were composed as follows: T0 (100% black soil, 0% potting soil), T1 (75% black soil, 25% potting soil), T2 (50% black soil, 50% potting soil) and T3 (25% black soil, 75% potting soil). The parameters measured were as follows: plant height, plant diameter, number of leaves per plant, leaf area of the plants and fresh above-ground biomass of the plants. The results showed that treatment T0 resulted in better growth and development of H. sabdariffa.

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Plant regulator of flower bud differentiation in in vitro plants of Cymbidium tortisepalum var. longibracteatum with TDZ as the key initiator

WU, C. q.; ZHAO, T.; CAO, F.; LI, H.; LI, J.

2026-07-30 plant biology 10.64898/2026.07.29.741633 medRxiv
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BackgroundCymbidium tortisepalum var. longibracteatum is a Class II nationally protected endangered plant in China with significant economic value. AimThis study aimed to establish an efficient in vitro flowering system and identify key hormonal factors regulating flower bud differentiation. MethodsOrthogonal experiments and hormone treatments were performed to evaluate the effects of TDZ, 6-BA, NAA, IBA, PP333, ABA, and GA3 on flower bud induction in tissue-cultured plantlets. ResultsTDZ was identified as the key initiator of flower bud differentiation, as no flower buds were induced in TDZ-free treatments. The optimal hormone combination was 1.0 mg{middle dot}L-1 6-BA + 0.4 mg{middle dot}L-1 TDZ + 0.8 mg{middle dot}L-1 NAA + 1.6 mg{middle dot}L-1 IBA, achieving a flower bud induction rate of 23.33% and a normal flower bud rate of 20.00%. PP333 inhibited flower bud differentiation but reduced malformation; at 0.2 mg{middle dot}L-1 PP333, the normal flower bud rate reached 20.00%. GA3 pretreatment resulted in a flower bud induction rate of 12.04%, whereas ABA pretreatment showed no significant promoting effect on flower bud induction. ConclusionsThis study provides an efficient in vitro flowering system and key hormonal parameters for shortening the breeding cycle and elucidating orchid flowering mechanisms.

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An in vitro regeneration system with efficient rooting in sweet orange (Citrus sinensis) supports recovery of transgenic plants

Datta, J.; Bhowmik, S. D.; Williams, B.; Kerr, S. C.

2026-07-08 plant biology 10.64898/2026.06.16.732047 medRxiv
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In vitro regeneration of Citrus plants is a widely used method, however, induction of adventitious roots from regenerated shoots remains a major bottleneck, limiting the recovery of healthy plants for commercial production and genomic research for crop improvement. We established an in vitro regeneration system producing profuse, healthy roots for sweet orange (Citrus sinensis cv. Benyenda) by optimising combinations and concentrations of auxins. Prior to optimising the rooting media (RTMs), we obtained a shoot regeneration rate of 90.6% from sweet orange epicotyl explants using a cytokinin, 6-benzylaminopurine (BAP). Across twelve auxin-supplemented RTMs containing different concentrations of indole-3-butyric acid (IBA) and/or 1-naphthaleneacetic acid (NAA), rooting percentages ranged from 8 - 87.5%. The combination of IBA 1.0 mg L-1 and NAA 0.1 mg L-1 promoted the best overall performance, 75 {+/-} 7.2% rooting percentage with healthy, callus-free roots ([≥]5 cm in length), whereas other RTMs with other auxin combinations induced callus and limited root elongation. The best-performing SRM and RTM were subsequently used for selection and recovery of transgenic sweet orange lines carrying an empty CRISPR/Cas9 construct, resulting in an 4.8% transformation efficiency. Both transgenic and non-transgenic rooted plantlets were successfully acclimatised under glasshouse conditions with a survival rate of 90%. This enhanced regeneration system overcomes rooting bottleneck and improves plant survival,enabling faster recovery of transgenic citrus lines within four months. It supports accelerated development for commercial applications and advances in citrus genetic improvement.

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Species and Accession Diversity of Secondary Metabolites and Antioxidant Activity in Legume Sprouts

An, G.; Kwon, H.; Ha, J.

2026-08-03 plant biology 10.64898/2026.07.31.741982 medRxiv
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Legume sprouts contain diverse bioactive phytochemicals, yet species- and accession-level comparisons of antioxidant properties and secondary metabolites remain limited. Antioxidant capacity, total phenolic content (TPC), total flavonoid content (TFC), and 19 secondary metabolites were evaluated in sprouts of soybean (Glycine max (L.) Merr.), mungbean (Vigna radiata (L.) R. Wilczek), cowpea (Vigna unguiculata (L.) Walp.), and peanut (Arachis hypogaea L.), using ten accessions per species under standardized conditions. Mungbean and cowpea sprouts showed significantly higher antioxidant activity, TPC, and TFC than soybean and peanut; across accessions, ABTS and DPPH activities ranged from 13.67 to 49.33% and 7.91 to 55.16%, and TPC and TFC from 3.91 to 13.81 mg GAE/g and 0.05 to 1.04 mg QE/g, respectively. Metabolite profiling revealed species-specific patterns, including isoflavones in soybean, rutin in mungbean, coumestrol in cowpea and resveratrol in peanut. Both antioxidant and phytochemical profiles varied with species and accession, so both can be selected to obtain sprouts with targeted properties.

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Biochemical Characterization of Fatty Acid Thioesterase Target Site Mutants and their Implication on Herbicide Resistance

Wagner, P.; Lerchl, J.; Betz, M.; Porri, A.

2026-06-14 biochemistry 10.64898/2026.06.11.731613 medRxiv
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Herbicide resistance threatens effective weed control in modern agriculture, particularly in grass weeds such as Alopecurus myosuroides and Lolium multiflorum. Cinmethylin is a pre-emergence herbicide with a novel mode of action that inhibits plastidial fatty acid thioesterases (FATs), enzymes essential for fatty acid biosynthesis. Although no cases of field resistance to cinmethylin have been reported, its resistance risk has not been fully assessed. In this study, we biochemically characterized defined amino acid substitutions in FAT A and FAT B to evaluate their effects on cinmethylin inhibition profile. Some substitutions in FAT A reduced inhibition in vitro, with mutations at residue R171 causing the largest shifts in sensitivity. However, these highly resistant variants required multiple specific nucleotide polymorphisms and are therefore predicted to be unlikely to arise in weed populations. In FAT B, sensitivity shifts were generally moderate. Importantly, most substitutions that reduced cinmethylin sensitivity also impaired enzymatic activity, suggesting limited viability in planta. Overall, these results indicate that while theoretical target-site resistance mechanisms exist, the practical risk of rapid resistance evolution to cinmethylin is low, supporting its value for integrated grass weed management

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Effects of different shading levels on growth, physiology and leaf surface micromorphology of Sorbus sibirica "Dong Hong" seedlings

Huang, R.; Gong, W.; Li, X.; Ji, S.; Cui, T.; Zhang, L.

2026-07-27 plant biology 10.64898/2026.07.25.740310 medRxiv
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BackgroundSorbus sibirica Dong Hong is a promising ornamental cultivar, but its optimal light conditions remain unclear. AimsThis study evaluated the effects of shading on seedling growth, physiology, root morphology, and leaf surface micromorphology. MethodsOne-year-old seedlings were grown under full sunlight (CK) and 30%, 50%, or 70% shade for 100 days. Growth, biomass, root traits, chlorophyll, invertase, soluble protein, stomatal characteristics, and epicuticular wax morphology were determined. ResultsShading significantly affected all measured traits. The 30% shade treatment produced the greatest seedling height, which increased by 118.18% compared with CK, and the highest chlorophyll content, which increased by 120.21%. Soluble protein content was slightly increased, whereas invertase activity decreased under moderate shading. Although total biomass decreased by 18.63%, root development remained relatively stable under 30% shade, with slight increases in total root length and average root diameter. Stomatal density was highest under this treatment, and the epicuticular wax structure remained relatively regular. In contrast, 70% shade markedly inhibited biomass accumulation and root development. ConclusionsModerate shading, particularly 30%, provided the most favorable light environment for Sorbus sibirica Dong Hong seedlings and is recommended for summer nursery cultivation in Northeast China.

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Impact of Solvent Extraction on Bioactive Properties of Lavandula x intermedia: Antibacterial, Antioxidant and Phenolic Content Analysis

GÜRSES, G.

2026-07-16 plant biology 10.64898/2026.07.11.737895 medRxiv
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Lavandula x intermedia (lavandin) is an economically important hybrid valued for its high essential oil yield; however, studies linking solvent polarity to its bioactivity and phenolic composition remain limited. This study evaluated the effects of nine extraction solvents on the antibacterial and antioxidant activities of L. x intermedia, determined total phenolic content (TPC), and examined the relationship between chemical composition and biological activity. Aerial parts were extracted by maceration. Antibacterial activity was assessed using the broth microdilution method against four bacterial strains, while antioxidant capacity was measured by the DPPH assay. TPC was determined using the Folin-Ciocalteu method, and phenolic compounds were analyzed via LC-MS/MS. Results showed that solvent polarity significantly influenced bioactivity. Diethyl ether extracts exhibited the highest TPC (267.65 mg GAE/g), strongest antioxidant activity (IC50: 72.26 {micro}g/mL), and notable antibacterial effects (MIC: 125 {micro}g/mL), especially against Gram-positive bacteria. A strong positive correlation (r = 0.887) was observed between phenolic content and antimicrobial activity. LC-MS/MS identified key compounds, including fumaric acid, resveratrol, and hydroxycinnamic acid. Overall, moderate-polarity solvents such as diethyl ether and methanol were most effective, highlighting L. x intermedia as a promising natural source for pharmaceutical and nutraceutical applications.

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Streptomyces sp. N2A promotes tomato (Solanum lycopersicum L.) vegetative growth and yield by modifying fruit morphology

Maldonado, R.; Iacomozzi, O.; Rodriguez, G.; Rodriguez, E.; Chiesa, M. A.

2026-08-14 plant biology 10.64898/2026.07.10.737781 medRxiv
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Tomato production, yield and fruit quality face major challenges due to several factors, including the complex polygenic inheritance of agronomically relevant traits, biotic and abiotic stresses, and increasingly stringent regulations limiting the use of phytosanitary products. In this context, bioinoculants have emerged as a sustainable strategy capable of enhancing yield without compromising fruit quality, conferring protection against different stresses and exerting a minimal or no impact on environment and human health. In this study, we evaluated the effects and the underlying mechanisms by which Streptomyces sp. N2A, an actinobacteria isolated from soybean rhizosphere, promotes seed germination, vegetative growth and yield in tomato, without modifying fruit quality. The obtained results demonstrated that the bacterial treatment significantly improved seedlin[g]s emergence and growth and development in vegetative stage. At harvest, yield was also significantly enhanced, mainly driven by increased individual fruit weight, which was positively correlated with a thicker pericarp in fruits from N2A-treated plants. Transcriptional analysis during fruit development revealed a coordinated induction of auxin and cytokinin signaling pathways before and after anthesis, providing a hormonal framework that underlies the promotion of pericarp growth. This study provides evidence of the beneficial effect of inoculation with Streptomyces sp. N2A on tomato yield and constitutes the first report describing the modification of fruit morphology and expression of genes involved in phytohormonal modulation during early growth and development, induced by a plant growth-promoting Streptomyces.

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The Role of Arthrobacter pascens 13LEP5 in mitigating Drought and Cold stress in Soybean (Glycine Max (L.) Merr.)

Jamil, Y.; Kaziuniene, J.; Colla, G.; Ramoskaite, S.; Toleikiene, M.

2026-08-09 ecology 10.64898/2026.08.03.742660 medRxiv
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Drought and low temperatures are major abiotic factors affecting key physiological and biochemical processes and limiting the yields of soybean (Glycine max L. Merr.). To in-crease soybean production in Europe, different agricultural strategies are applied to re-duce abiotic stress, including biostimulants. Therefore, studies on the effectiveness of local strains isolated in Europe are becoming increasingly relevant. In this study two bacterial strains Arthrobacter pascens (AP) and Bradyrhizobium japonicum (BJ) along with plant-derived protein hydrolysate (PH) were analysed with soybean plans under abiotic stress conditions in plant growth chambers. Six treatments (control; AP; BJ; PH; BJ+AP; BJ+AP+PH) were tested to evaluate biostimulation effect before stress induction (VC stage) and to determine stress reduction effect on soybeans after plants recovery period (V3 stage). Biostimulants application has positive effect on soyabean biometric parameters in early plant development stage and post stress periods. More stable long-term effect was found on structural plant development parameters, than on pigment accumulation. The best results on plant biometric parameters were found where (AP) and (BJ+AP+PH) com-bination was inoculated. (BJ+AP+PH) combination was the only effective treatment, which showed significantly different results in pigments indices, compared to the control, after stress period. Author summaryYasha Jamil: Conceptualization, Data curation, Formal analysis, Writing- original draft, Giuseppe Colla: Formal analysis, Writing- original draft, Writing- review & editing, Justina Kaziuniene: Data curation, Formal analysis, Sarune Ramoskaite :Writing- review & editing. Monika Toleikien[e]: Conceptualization, Data curation, Formal analysis, Writing- original draft, Funding acquisition, Supervision, Writing- review & editing.

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Do commercial nitrogen-fixing and biostimulant inputs add agronomic value over standard fertilization? An equivalence-based re-analysis of three randomized field trials in the Brazilian Cerrado

Horita, V.;Yuan, L.

2026-06-17 Plant Biology 10.64898/2026.06.16.732230 medRxiv
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Commercial inoculants based on associative diazotrophs and methylotrophic bacteria, and bios-timulant programs, are marketed for broad use in cereal and fiber production, yet most field deployment occurs over already adequate mineral fertilization, where their marginal value is poorly quantified. We reanalyzed three randomized complete-block trials conducted at commercial scale in the Brazilian Cerrado (Sao Desiderio, Bahia) under full conventional fertilization: corn (seven treatments, four blocks; 2023/24), cotton (five treatments, four blocks; 2024/25), and soybean (four treatments, six blocks; 2024/25). Treatments evaluated Azospirillum brasilense, Methylobacterium symbioticum, Bradyrhizobium spp., a Bacillus phosphorus solubilizer, and biostimulants, applied via seed and foliar routes. Beyond conventional analysis of variance, we fit mixed models with block as a random effect, quantified effect sizes and coefficients of variation, computed the minimum detectable difference at 80% power, and applied two one-sided equivalence tests (TOST) against the untreated control at margins of plus or minus 10% and 15% of control yield. No treatment produced a statistically significant yield gain in any crop (all p greater than 0.8; fixed and mixed models concordant). In cotton, the best-powered trial (coefficient of variation 6%), all treatments were statistically equivalent to the untreated control within a 10% margin, an affirmative negative result. In corn and soybean the trials were underpowered (minimum detectable difference 21 to 26% of control), so non-significance is not equivalence; corn showed non-significant numerical gains up to 8.9% with phosphorus-solubilizer and methylotroph combinations that could not be excluded. Foliar nutrient concentrations (single composite per treatment, descriptive) showed no enrichment in inoculated treatments. Under standard fertilization, these commercial inputs delivered no detectable agronomic value where the data were adequately powered to test it. The results clarify the low empirical bar that current associative-fixation products meet in the field and, by extension, the agronomic threshold that engineered, plant-controlled nitrogen fixation must exceed to be useful.

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Characterization of a novel R98Q mutation that confers resistance to sulfentrazone in common ragweed (Ambrosia artemisiifolia) populations from MichiganShort title: PPO resistance in common ragweed

Alvarez Rodriguez, S.; Ozolins, M.; Porri, A.; Lerchl, J.; Patterson, E.

2026-08-03 plant biology 10.64898/2026.07.31.742095 medRxiv
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BACKGROUNDIn 2023, soybean growers in Eaton County, Michigan, reported repeated failures to control common ragweed (Ambrosia artemisiifolia L.) with (PPO)-inhibiting herbicides, sulfentrazone and fomesafen, in non-genetically modified soybeans. This study aimed to investigate resistance levels and mechanisms of resistance in two suspected resistant populations (R1 and R2). RESULTSDose-response assays revealed resistance to sulfentrazone in both populations, with LD50 values 24 and 36-fold higher than the susceptible population and reduced sensitivity to fomesafen. Nanopore sequencing identified two PPO2 target-site substitutions at codon 98: Arg- 98-Leu (R98L) and a novel Arg-98-Gln (R98Q) mutation. Both substitutions were associated with reduced herbicide binding affinity in computational modelling simulations. R98Q substitution conferred strong and selective resistance in the PPO2 enzyme inhibition assays, supporting its role as a key resistance mechanism. CONCLUSIONThis study reports the first field occurrence of the R98Q substitution in PPO2 of A. artemisiifolia populations and demonstrates its association with to PPO inhibitor resistance. These findings highlight the rapid evolution of target-site resistance and the need for continued monitoring and rapid diagnostic tools to detect emerging mutations. Further research is needed to clarify the contribution of additional resistance mechanisms.

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PREVALENCE OF FUSARIUM WILT (Fusarium oxysporum f. sp. Lycopersici) on TOMATO (Solanum lycopersicum L.) IN CHIKUN LGA, KADUNA STATE

Rilwan, O.; Ibrahim, A.

2026-07-09 plant biology 10.64898/2026.06.24.734226 medRxiv
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Tomato (Solanum lycopersicum L.) is one of the most important vegetable crops in Nigeria, serving as a major source of income, nutrition, and raw material for food industries. However, its production is severely constrained by Fusarium wilt, a destructive soil-borne disease caused by Fusarium oxysporum f. sp. lycopersici. This study investigated the prevalence and severity of Fusarium wilt on tomato in Chikun Local Government Area (LGA) of Kaduna State, Nigeria. Field survey and laboratory analyses were conducted on forty-five tomato samples from three tomato farms Kujama, Kakau, and Rido. The samples were examined for disease incidence and severity. Data were analyzed using descriptive statistics and Chi-square tests. The overall disease incidence was with Rido recording the highest infection rate (80.0%), followed by Kujama (60.0%) and Kakau (40.0%). Among plant parts, the stem exhibited the highest infection frequency (80.0%), while leaves and fruits had 60.0% and 40.0% incidence respectively. Chi-square analysis indicated no significant difference (p > 0.05) in disease incidence among farms and plant parts, suggesting uniform pathogen distribution. The research recommends the adoption of integrated disease management strategies and improved farmer awareness to mitigate the impact of the disease and ensure sustainable tomato production.

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Optimizing the fertilizer N rates at different irrigation levels for optimum yield of wheat and corn at reduced nitrate leaching losses

Tahir, M.; Mulla, D. J.; Maqbool, S.; Zain, M.; Adeel, M.; Hassan, A. U.

2026-08-13 plant biology 10.64898/2026.08.12.744458 medRxiv
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Optimum irrigation and fertilizer nitrogen (N) rates are important to improve crop yield at reduced environmental risks in the form of NO3-N leaching losses, without any financial loss. The study aimed to investigate the impact of rational irrigation and nitrogen management on wheat and maize crop yield vs. NO3-N leaching losses, with field experiments conducted at the experimental station, University of Agriculture Faisalabad, Pakistan, for two years, with wheat-fallow-corn seasons each year. Suction lysimeter were installed for collection of leachates while soil water balance was computed using the HYDRUS-1D model. We explored the various management strategies, including three irrigation and N levels (sub-optimal, optimal, and supra-optimal, referred to as I1, I2, and I3 for irrigation, and N1, N2, and N3 for nitrogen, respectively) for wheat and maize crops. The three irrigation levels were 325, 400, and 475 mm for wheat, and 375, 525, and 675 mm for maize crops. The three N-levels were 100, 130, and 160 kg ha-1 for wheat, and 220, 270, and 320 kg ha-1 for maize. The results indicated that increasing the irrigation and nitrogen levels significantly improved the growth and yield of both crops during both seasons. The highest grain yield of wheat (4.0 t ha-1) and maize (7.8 t ha-1) was observed with I3N3; however, I2N3 showed statistically no difference in yield, while showing significantly reduced (28.6%) annual NO3-N leaching losses of 23.8 kg ha-1, and the highest financial benefits of 780$. Sub-optimal levels of irrigation and N, though reduced the NO3-N leaching losses, caused significant yield losses, generally unacceptable to the farmers. Irrigation water use efficiency (WUEi) also improved by 12% in wheat and 20% in maize under I2 than that of the I3 level. Besides, considering economic profit, the highest value cost ratio (1.64 and 2.04 in wheat and maize, respectively) was achieved under the I2N3 treatment, as opposed to the other treatments. Based on comprehensive analysis, the I2N3 treatment is recommended for sustainable yield and minimal environmental risk in the wheat-maize cropping system. Moreover, it was observed that the rainy fallow period contributes 14.0-31.5% of the total NO3-N leaching losses. Further investigation is needed to minimize NO3-N leaching losses, especially during the rainy fallow period, by early maize sowing and increasing the efficiency of N fertilizer (such as fertilizer coating) under the flood irrigation system, to achieve the potential goals of sustainable productivity and environmental security.

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Resistance to protoporphyrinogen oxidase inhibitor herbicides in giant ragweed (Ambrosia trifida) is associated with a novel R98Q target-site mutation in PPO2

Bernardi Rankrape, C.; Werle Noe, I.; Lago, E.; Lopez, A. J.; Tranel, P. J.; Gage, K. L.

2026-07-17 plant biology 10.64898/2026.07.16.738972 medRxiv
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BACKGROUNDReduced control of giant ragweed (Ambrosia trifida L.) with protoporphyrinogen oxidase (PPO)-inhibiting herbicides was recently reported in two southern Illinois populations, VRC and TMS. The objectives of this study were to assess resistance to postemergence-applied PPO inhibitors in VRC and TMS, evaluate VRC response to acetolactate synthase (ALS)- and enolpyruvyl shikimate phosphate synthase (EPSPS)-inhibiting herbicides, and identify target-site mechanisms associated with PPO-inhibitor resistance. RESULTSBased on LD estimates, VRC resistance ratios ranged from 1.1- to 3.7-fold for lactofen and 2.2- to 6.9-fold for fomesafen relative to PPO-sensitive populations SIU and DSO. In TMS, LD estimates were 257.4 g ai ha {superscript 1} for lactofen and 318.4 g ai ha {superscript 1} for fomesafen. Glyphosate LD estimates exceeded three times the labeled field rate in VRC, SIU, and DSO, whereas VRC and SIU had higher cloransulam-methyl LD estimates than DSO. Whole-transcriptome sequencing identified polymorphisms in PPX1 and PPX2; however, only PPO2 R98Q altered a catalytic-domain binding-pocket residue and was considered likely to contribute to resistance in VRC. R98Q was absent in TMS, and PPX1 and PPX2 expression did not differ among populations. CONCLUSIONVRC and TMS have evolved resistance to lactofen and fomesafen, and VRC also exhibited reduced sensitivity to cloransulam-methyl and glyphosate. PPO2 R98Q is novel in A. trifida and, to our knowledge, represents the first report of this mutation associated with PPO-inhibitor resistance in plants. The absence of target-site alterations in TMS suggests a potential non-target-site basis for resistance. These findings highlight the need for integrated, diversified management to further reduce herbicide selection pressure.

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Small variations in temperature and photoperiod under field conditions in South America modified spring barley phenology and foliar development

Mastandrea, N. F.; Quero, G. E.; Castro, A. J.

2026-08-28 plant biology 10.64898/2026.08.27.747666 medRxiv
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Context. Barley production requires advanced knowledge of its response to changing environmental conditions in order to keep it competitive and sustainable. Aim. Advance in the understanding of barley phenology and foliar development under South American field conditions. Methods. 8 spring barley genotypes with differential phenology were studied in four field experiments under different temperature (through years and sowing dates) and photoperiod (through sowing dates) conditions. Time to anthesis, emergence to onset of stem elongation, stem elongation to anthesis, photoperiod response (PR) in these three traits, number of final leaves at anthesis (FLN) and phyllochron were measured. Key Results. Time to anthesis and its subphases were shorter in late plantings but under similar photoperiod, temperature increased them. Cultivars have differential responses but with magnitude interactions and not crossover ones. Cultivar effects defined PR with no interaction with year (temperature). Temperature and photoperiod affected FLN, phyllochron and their relationship with time to anthesis. Under the shorter photoperiod, FLN and phyllochron were negatively correlated, FLN was higher in the warmer year and positively correlated with time to anthesis while phyllochron was not affected by temperature and had no correlation with time to anthesis. Under longer photoperiod, phyllochron was higher in the warmer year and time to anthesis was positively correlated with both FLN and phyllochron. Conclusions. Cultivar basal thermal requirements and PR were consistent under the different studied conditions. Changes in temperature and photoperiod affected the relationship between time to anthesis, FLN and phyllochron suggesting that, although the three traits are arithmetically related, environmental conditions affect their balance.

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Genotype-Dependent Variation in Vitamins B1, B2, B3, B6, B9, and C in Mungbean Sprouts

Jeon, S.; Kwon, H.; Song, S. Y.; Lim, S. D.; Ha, J.

2026-08-03 plant biology 10.64898/2026.07.31.742010 medRxiv
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Water-soluble vitamins are essential micronutrients that are not stored extensively in the human body and must therefore be replenished through dietary intake. Mungbean sprouts are widely consumed in some populations; however, their contributions as dietary sources of water-soluble vitamins and the extent of genotype-dependent variations remain insufficiently characterized. In this study, six water-soluble vitamins (B1, B2, B3, B6, B9, and C) were quantitatively and qualitatively analyzed using ultra performance liquid chromatography in sprouts derived from 34 mungbean genotypes. With the exception of pyridoxine (vitamin B6), all analyzed vitamins were detected across all genotypes, and their contents showed significant genotype-dependent variation. To determine whether differences in vitamin composition are reflected in functional responses, antioxidant capacity and enzyme-based bioactivity were evaluated. Antioxidant activity varied significantly among genotypes and showed a positive correlation with nicotinamide (B3) content, while tyrosinase inhibition was positively correlated with thiamine (B1). Evaluation of vitamin contents on a fresh-weight basis demonstrated that a single 104 g serving of mungbean sprouts can provide 46%- 206% of the recommended daily allowance of thiamine depending on genotype, while supplying all analyzed water-soluble vitamins, including B1, B2, B3, B6, B9, and C. This studys findings support the potential of mungbean sprouts to serve as plant-based dietary sources of water-soluble vitamins and offer a basis for selecting genetic resources to improve the vitamin-related nutritional quality of mungbean sprouts.

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LsBADH1 is responsible for sweet fragrance in lettuce (Lactuca sativa L.) through 2-acetyl-1-pyrroline biosynthesis

SEKI, K.; Matsui, K.; YANAGIDATE, M.; NISHIDA, K.; KOYAMA, R.; Uno, Y.

2026-06-16 genetics 10.64898/2026.06.13.731611 medRxiv
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HighlightThe sweet fragrance of lettuce was attributed, for the first time, to the synthesis of 2-acetyl-1-pyrroline caused by a deficiency in the betaine aldehyde dehydrogenase gene. Fragrance is among the most valuable traits of high-quality crops and influences consumer preferences. Although 2-acetyl-1-pyrroline (2AP) is a key component of fragrant cultivars in several crops, its genetic mechanism in lettuce (Lactuca sativa L.) remains poorly understood. The betaine aldehyde dehydrogenase (BADH) gene has been identified as causative for 2AP-derived fragrance in rice and soybean cultivars. Hence, we conducted a linkage analysis using an F2 population derived from a cross between Kukichisya (fragrant) and Rennet (non-fragrant) for three candidate genes of BADH orthologs in the lettuce genome. Analysis linked LOC111877932 located in LG4 to the fragrance trait, and it was designated LsBADH1. Comparison among Kukichisya, Salinas, and candidate BADH of sunflower (Helianthus annuus L.) revealed three non-synonymous single-nucleotide polymorphisms (nsSNPs) in exons 1, 2, and 9, and suggested that nsSNP in exon 9 was strongly correlated with fragrance in Kukichisya. A premature stop codon introduced in exon 5 of LsBADH1 using Target-AID base-editing technology resulted in truncated BADH1 and higher 2AP levels. Our results indicated that LsBADH1 is responsible for the 2AP-derived fragrance. Our findings can be applied to select cultivars based on a novel concept for the cooking process, providing a transformative platform to breed fragrant lettuce as a high-value-added product.

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Assessing Drought Resilience and Identification of High Yielding Upland Rice Varieties through Phenology, Growth and Yield Traits

Hussain, T.; Anothai, J.; Nualsri, C.; Ali, A.; Khomphet, T.

2026-08-29 plant biology 10.64898/2025.12.20.695743 medRxiv
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Drought stress is the major yield limiting factor in upland rice production where the moisture availability is highly variable. Understanding and evaluating how upland rice responds to drought stress is critical to improving resilience and yield stability. In this study performance of sixteen upland rice varieties were evaluated under non-stressed, moderately stressed and highly stressed conditions. Drought stress was introduced by irrigating upland rice at 70% and 50% field capacity (FC) whereas non-stress treatment was irrigated at 100% FC. Irrigation in moderately stressed and highly stressed conditions was also withheld for six days at lateral crop stages to observe temporary wilting by inducing a stress interval. Data on agronomic traits of upland rice was collected in three experimental replications. Results indicated that performance of upland rice varieties was significantly altered under stress conditions and highest performance was observed under non-stressed conditions. Yield losses for short duration and long duration varieties ranged 35-60% and 24-62% under moderate stress whereas it ranged 43-78% and 52-73% under highly stressed conditions, respectively. Overall varieties Dawk Kha, Khao/ Sai and Dawk Pa-yawm, indicated higher stability under stressed conditions therefore, these long duration varieties could be used for obtaining better yields under diverse agroclimatic conditions and under unpredicted weather patterns. Short duration Ma-led-nai-fai and long duration Goo Meung Lung and Bow Leb Nahag could be used for acquiring traits for higher tillering and panicle bearing capacity. Short heighted varieties such as Jao Daeng, Sahm Deuan and Ma-led-nai-fai could be used in breeding for short heighted new varieties to overcome lodging concerns. Strong significant association of GMP, STI, MPRO, MHAR with grain yield under non-stressed, moderately stressed and highly stressed conditions indicated that these indices were appropriate for their use as selection criteria for drought resilience.