Biallelic Variants in KMO Cause a Novel Form of Congenital NAD Deficiency

Congenital NAD deficiency disorder (CNDD) is a gene x environment disorder caused by disruptions of the kynurenine pathway. To date, CNDD has been associated with biallelic variants in three kynurenine pathway genes: KYNU, HAAO, and NADSYN1. We identified two sisters with congenital anomalies overlapping with CNDD who have biallelic variants in a gene encoding a different kynurenine pathway enzyme, KMO. The surviving child also has elevated levels of metabolites upstream of KMO with low NAD+ levels in plasma, suggesting that KMO deficiency is a novel CNDD. To explore the pathogenicity of KMO deficiency, we generated a global Kmo knockout mouse model (Kmo-/-) and utilized dietary interventions to better model human gene x environment interactions. Although Kmo-/- mice are viable and fertile on typical breeder chow, they exhibit elevated serum kynurenine and are functionally vitamin B3-dependent. Under conditions of limited maternal vitamin B3 intake, a greater proportion of Kmo-/- embryos develop congenital anomalies and have significantly lower NAD+ levels than Kmo+/- littermates. Exploratory untargeted metabolomics performed in Kmo-/- embryos suggested that NAD+ deficiency may perturb the pyrimidine, purine, and pentose phosphate pathways. These findings establish KMO deficiency as a new cause of CNDD and highlight a critical gene x environment interaction influencing NAD metabolism and congenital anomalies.