Classification of ACE variants related to Alzheimer's disease (AD): the ACE mutations -- AD browser

Background: ACE variants are genetic risk factors for Alzheimer's disease (AD), potentially through reduced enzymatic activity and impaired amyloid {beta} hydrolysis. Objectives: To create a publicly available database of ACE variants relevant to ACE deficiency and AD, and to estimate the population frequency of damaging ACE variants and their impact on blood ACE levels. Methods: ACE variants were compiled from literature, public databases (VarSome, dbSNP, ClinVar, gnomAD), and sequencing data (WES/WGS) from 5147 Russian individuals. Variants were classified using a consensus in silico score (AlphaMissense, MetaRNN, EVE). Blood ACE levels were measured in 330 carriers of 64 different ACE mutations. Results: We identified 1682 unique ACE variants. Of these, 608 (36.2%) were classified as functionally damaging, including 17 signal peptide, 210 loss of function, and 381 missense variants. The estimated carrier frequency of damaging ACE variants was 2 % (1/50). Notably, 24 variants associated with experimentally confirmed reductions in blood ACE levels had a combined estimated carrier frequency of 3.9 % in the general population, calculated from cumulative gnomAD v4.1.0 allele frequencies under a rare-variant independence model. An open-access browser is available at https://ace-browser.com/. Conclusions: Variants associated with reduced blood ACE levels were estimated to be carried by approximately 1 in 25 individuals in the general population. This frequency is of the same order of magnitude as the 13.2% prevalence of Alzheimer's dementia in individuals aged 75-84 years (Alzheimer's Association, 2025), consistent with the hypothesis that ACE deficiency may represent an underrecognized contributor to late-onset AD susceptibility. The ACE mutations-AD browser and integrated genotype-phenotype data presented here provide a novel resource for future basic, translational, and clinical research on ACE-dependent AD.