What colour are Actinomycetes? We have a tool for that! PhylaChrome - A systematic and deterministic tool for assigning colours that capture taxonomic relationships in microbiome datasets
Theriault, R. L.; Parkinson, J.
Show abstract
Visual representations of data generated from complex microbial communities (i.e. microbiomes) can provide intuitive insights into their structure, function, and dynamics. However, current approaches typically rely on ad hoc selection of colour palettes that fail to capture taxonomic relationships and limit cross-study comparisons. PhylaChrome has been developed to systematically and deterministically assign colours to enhance visual separation of taxa, capture taxonomic relationships and facilitate intuitive comparisons across datasets.
Matching journals
The top 9 journals account for 50% of the predicted probability mass.
Similar papers in this journal
- Genomic GC bias correction improves species abundance estimation from metagenomic data 95%
- Microbiome differential abundance methods produce disturbingly different results across 38 datasets 94%
- Integration of taxonomic signals from MAGs and contigs improves read annotation and taxonomic profiling of metagenomes 94%
"Similar papers" are the closest papers from that journal in the model's embedding space. They show what the match is built on, but the ranking comes mostly from a classifier over the whole training set, not from these examples alone.