Back

Prediction of multiple drug resistant pulmonary tuberculosis against drug sensitive pulmonary tuberculosis by CT nodular consolidation sign

Huang, X.-L.; Skrahin, A.; Lu, P.-X.; Alexandru, S.; Crudu, V.; Astrovko, A.; Skrahina, A.; Taaffe, J.; Harris, M.; Long, A.; Wollenberg, K.; Engle, E.; Hurt, D.; Akhundova, I.; Ismayilov, S.; Mammadbayov, E.; Gadirova, H.; Abuzarov, R.; Seyfaddinova, M.; Avaliani, Z.; Vashakidze, S.; Shubladze, N.; Nanava, U.; Strambu, I.; Zaharia, D.; Muntean, A.; Ghita, E.; Bogdan, M.; Mindru, R.; Spinu, V.; Sora, A.; Ene, C.; Sergueev, E.; Kirichenko, V.; Lapitski, V.; Snezhko, E.; Kovalev,, V.; Tuzikov, A.; Gabrielian, A.; Rosenthal, A.; Tartakovsky, M.; Wang, Y.-X.

2019-11-07 pathology
10.1101/833954 bioRxiv
Show abstract

Multidrug-resistant tuberculosis (mdrtb) refers to TB infection resistant to at least two most powerful anti-TB drugs, isoniazid and rifampincin. It has been estimated that globally 3.5% (which can be much higher in some regions) of newly diagnosed TB patients, and 20.5% of previously treated patients had mdrtb. Extensively drug-resistant TB (xdrtb) has resistance to rifampin and isoniazid, as well as to any member of the quinolone family and at least one of the second line injectable drugs: kanamycin, amikacin and capreomycin. xdrtb accounts for 4-20% of mdrtb. Early detection and targeted treatment are priorities for mdrtb/xdrtb control. The suspicion of mdr/xdr -pulmonary TB (mdrptb or xdrptb) by chest imaging shall suggest intensive diagnostic testing for mdrptb/xdrptb. We hypothesize that multiple nodular consolidation (NC) may serve one of the differentiators for separating dsptb vs mdrptb/xdrptb cases. For this study, mdrptb cases (n=310) and XDR-PTB cases ([xcap]=I58) were from the NIAID TB Portals Program (TBPP) <https://tbportals.niaid.nih.gov>. Drug sensitive pulmonary TB (dsptb) cases were from the TBPP collection (n=112) as well as the Shenzhen Center for Chronic Disease Control (n=111), Shenzhen, China, and we excluded patients with HIV(+) status. Our study shows NC, particularly multiple NCs, is more common in mdrptb than in dsptb, and more common in xdrptb than in mdrptb. For example, 2.24% of dsptb patients, 13.23% of mdrptb patients, and 20.89% of xdrptb patients, respectively, have NCs with diameter >= 10mm equal or more than 2 in number.

Matching journals

The top 1 journal accounts for 50% of the predicted probability mass.

50% of probability mass above

"Similar papers" are the closest papers from that journal in the model's embedding space. They show what the match is built on, but the ranking comes mostly from a classifier over the whole training set, not from these examples alone.