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To Include or Not to Include? A prescription from the pharmacy on how to use active learning assisted screening in systematic reviews

Verdonschot, R. G.; Dilles, T.; Cahir, C.; De Graef, M.; Holis, R. V.; Frydenlund, J.; Denig, P.; Grimes, T.; Karapinar-Carkit, F. G.; Schor, M.

2025-09-28 pharmacology and therapeutics
10.1101/2025.09.26.25336705 medRxiv
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BackgroundSystematic reviews are critical for evidence-based decision-making but require significant manual effort during the screening stage, which is labor-intensive and prone to error. Active learning (AL)-assisted screening tools have emerged to address these challenges. However, guidance for using AL-assisted screening in systematic reviews - especially those employing broad search strategies with heterogeneous results - is limited. This study aims to assess the effectiveness and reliability of AL-assisted screening for large, heterogeneous datasets. Specifically, it evaluates the comprehensiveness and necessity of the recommended SAFE procedure, examines the influence of different labeling strategies, and investigates whether AL-assisted screening can aid in reducing manual screening errors. MethodsScreening of four large, heterogeneous datasets from medication management systematic reviews was simulated using ASReview. The datasets ranged from 3475 to 16218 records. For these datasets 0.08 to 1% of records were included in the final systematic review. Our simulations systematically varied all parameters defined by the SAFE procedure. Recall versus sampling behavior was analyzed, with a focus on the impact of parameter choices on retrieving records selected for full text inclusions and on reducing the number of records to be screened. ResultsAL-assisted screening can effectively reduce the number of records to screen by almost 90% without increasing the risk of missing relevant records in comparison to manual screening. For three of our datasets, the best performance (100% recall of full text includes and 89-90% reduction in the number of records to screen) is achieved when using the SAFE procedure in combination with the elas-u4 and elas-h3 models and full text labeling. This choice of parameters results in only 87% recall of full text includes for the remaining dataset (16218 records, 0.6% title/abstract includes, 0.08% full text includes). For this dataset, the best performance (100% recall, 90% screening reduction) is achieved when using the SAFE procedure with the simpler Naive Bayes model and TF-IDF feature extractor and title/abstract labeling. ConclusionsAL-assisted screening can safely and effectively reduce the workload needed to screen the large, heterogeneous datasets common in medication management systematic reviews. We recommend the modified SAFE procedure using full-text labels and the elas models. If the estimated ratio of full text includes is very low, it may be more appropriate to use the original SAFE procedure with title/abstract labeling.

Published in Systematic Reviews (predicted rank #7) · training set

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