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Cholera in Kenya: a scoping review of current research, evidence gaps and future directions

Wamae, K.; Magudha, J.; Kakungu, A.; Aricha, S.; Langat, D.; Kinyanjui, S.; Mokaya, J.; Thomson, N. R.; Agoti, C.; Githinji, G.

2025-09-16 infectious diseases
10.1101/2025.09.16.25335755 medRxiv
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BackgroundCholera remains a major public health issue in Kenya, driven by environmental pollution, poor sanitation, poor surveillance, and sporadic climate shocks. The disease continues, particularly in underprivileged areas and refugee camps, despite scientific developments, particularly in molecular surveillance and environmental monitoring. ObjectivesThis scoping review sought to map peer-reviewed literature on cholera in Kenya published until October 2024. The emphasis is on assessing epidemiological patterns, transmission dynamics, surveillance efficacy, clinical management, and advancements, including molecular tools. Eligibility CriteriaStudies were included if they were peer-reviewed, published in English, focused on cholera in Kenya, and addressed one or more domains aligned with the Kenya National Multisectoral Cholera Elimination Plan (NMCEP) 2022-2030, namely, leadership and coordination, case management, surveillance, water, sanitation, and hygiene (WASH), risk communication, or oral cholera vaccination. Studies unrelated to cholera, outside the Kenyan context, or inaccessible were excluded. Sources of EvidenceUsing the terms cholera AND Kenya, five databases (Google Scholar, Web of Science, PubMed, Embase, and Scopus) were systematically searched. Of the 845 records found, 106 studies were included following an eligibility assessment and screening process. Charting MethodsRayyan was used to screen titles and abstracts. A standardised form capturing study goals, methodology, results, gaps, and geographic coverage was used to extract data. Trends were mapped, and research needs were found through thematic synthesis. ResultsThe studies revealed that El Nino episodes and drought situations aggravate cholera hotspots in urban informal settlements and refugee camps. Though they face cost and scale-up challenges, innovations like rapid diagnostics and whole genome sequencing (WGS) show promise. Sociocultural obstacles, inadequate laboratory equipment, and fragmented surveillance networks hinder control initiatives. ConclusionsControlling cholera in Kenya requires an integrated, multisectoral strategy aligned with the National Multisectoral Cholera Elimination Plan (NMCEP) 2022-2030. This includes strengthening molecular surveillance, improving WASH systems, enhancing laboratory and diagnostic capacity, and supporting community-driven initiatives. Sustainable cholera prevention will depend on bridging the gap between scientific innovation and real-world implementation through predictive modelling, coordinated planning, and culturally informed health education.

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