Viral Landscape of Gastric Adenocarcinoma Reveals Clinically Relevant Viruses
Pereira, D.; Moreira, F. C.; Avelar, D. d. S.; Ramos, S. A. A.; Silva, V. C. S.; Silva, J. M. C.; Mourao, R. M. d. S.; Silva, R. F.; Guimaraes, K. S. P.; Pinto, J. B. A.; Conceicao, M.; Barra, W. F.; Demachki, S.; Casseb, S. M.; Burbano, R. M. R.; Assumpcao, P. P.
Show abstract
BackgroundGastric cancer (GC) ranks among the most common and lethal cancers worldwide, with poor prognosis mainly due to late diagnosis. Accumulating evidence highlights the role of the gastric microbiome in carcinogenesis through inflammation, genomic instability, and immune modulation. Unlike the bacterial component, the gastric virome remains largely unexplored despite its potential contribution to tumor development. The present study aimed to characterize the virome present in tumor and peritumoral tissues from patients with GC. Materials and Methods105 tumor and 85 peritumoral gastric tissues were analyzed. RNA was extracted, libraries were prepared, and sequencing was performed on the Illumina NextSeq 500. Viral reads were classified with Kraken2. Taxonomic profiles, viral abundance and diversity metrics were computed in R, with group differences assessed by Wilcoxon tests and PERMANOVA (p < 0.05). ResultsIn this study, 38 viral orders and 329 viral genera were identified in gastric tumor and peritumoral tissues. Tumor tissues harbored 210 viral genera, including 109 exclusive to this microenvironment, with bacteriophages comprising the majority, alongside human-infecting and other eukaryotic viruses. Lymphocryptovirus, Cytomegalovirus, and Alphapapillomavirus were enriched in tumors. Alpha and beta diversity analyses revealed no significant differences between tumor and peritumoral tissues, indicating comparable viral richness and composition. ConclusionThese findings underscore the complexity of the gastric virome and provide a foundation for future investigations into the interactions and mechanisms through which the viral community could influence the development of gastric cancer, highlighting its potential role in gastric health and disease.
Matching journals
The top 6 journals account for 50% of the predicted probability mass.
Similar papers in this journal
- Enteric viruses nucleic acids distribution along the digestive tract of rhesus macaques with idiopathic chronic diarrhea 93%
- Metatranscriptomic comparison of viromes in endemic and introduced passerines in New Zealand 92%
- Diversity and ecology of Caudoviricetes phages with genome terminal repeats in fecal metagenomes from four Dutch cohorts 92%
Similar papers in this journal
- Identification and classification of the genomes of novel Microviruses in a poultry slaughterhouse 93%
- Discovery of two novel Torque Teno viruses in Callithrix penicillata provides insights on Anelloviridae diversification dynamics 93%
- Nasopharyngeal microbial communities of patients infected with SARS-COV-2 that developed COVID-19. 92%
Similar papers in this journal
- Mucosal gene expression in response to SARS-CoV-2 is associated with early viral load. 93%
- Diverse RNA viruses associated with diatom, eustigmatophyte, dinoflagellate and rhodophyte microalgae cultures 92%
- Limited effect of short- to mid-term storage conditions on an Australian farmland soil RNA virome 91%
Similar papers in this journal
Similar papers in this journal
- Detection of Lumpy Skin Disease Virus Reads in the Human Upper Respiratory Tract Microbiome Requires Further Investigation 93%
- Culture and identification of a “Deltamicron” SARS-CoV-2 in a three cases cluster in southern France 92%
- Distinct mutations and lineages of SARS-CoV-2 virus in the early phase of COVID-19 pandemic and subsequent one-year global expansion 91%
"Similar papers" are the closest papers from that journal in the model's embedding space. They show what the match is built on, but the ranking comes mostly from a classifier over the whole training set, not from these examples alone.