Back
Tech Note- Increased Complexity of Amplicon Libraries using Phased Primers
Bonath, F.
2025-09-02
genomics
10.1101/2025.08.26.672315
bioRxiv
Show abstract
Phased primers are used during the first PCR of amplicon library preparation in order to increase the complexity of the library. This increased complexity leads to improved sequencing quality even when sequencing with a 2x300 paired-end setup. We can show that libraries prepared using a phased primer approach are complex enough to reduce the amount of PhiX added to the sequencing reaction to that of other, complex libraries.
Matching journals
●Non-profit
◐University press
○Commercial
The top 4 journals account for 50% of the predicted probability mass.
1
PLOS ONE
●
4510 papers in training set
Top 4%
27.0%
2
Current Protocols
○
13 papers in training set
Top 0.1%
8.8%
3
Scientific Reports
○
3102 papers in training set
Top 8%
8.8%
4
BMC Genomics
○
328 papers in training set
Top 0.2%
6.7%
50% of probability mass above
5
BMC Bioinformatics
○
383 papers in training set
Top 2%
4.1%
6
F1000Research
○
79 papers in training set
Top 0.4%
3.8%
7
Archives of Clinical and Biomedical Research
○
28 papers in training set
Top 0.3%
2.5%
8
PeerJ
◐
261 papers in training set
Top 5%
2.0%
9
Forensic Science International: Genetics
○
24 papers in training set
Top 0.1%
1.8%
10
Peer Community Journal
●
254 papers in training set
Top 2%
1.8%
11
Biology Methods and Protocols
◐
53 papers in training set
Top 0.8%
1.7%
12
Journal of Bioinformatics and Systems Biology
○
14 papers in training set
Top 0.3%
1.2%
13
Genes
○
126 papers in training set
Top 2%
0.9%
14
Virus Research
○
36 papers in training set
Top 0.9%
0.9%
15
Bioinformatics
◐
1061 papers in training set
Top 8%
0.9%
16
Computational and Structural Biotechnology Journal
●
216 papers in training set
Top 7%
0.9%
17
Heliyon
○
146 papers in training set
Top 4%
0.9%
18
Methods
○
29 papers in training set
Top 0.4%
0.9%
19
International Journal of Molecular Sciences
○
453 papers in training set
Top 13%
0.8%
20
Viruses
○
318 papers in training set
Top 5%
0.8%
21
BioTechniques
○
24 papers in training set
Top 0.2%
0.8%
22
Molecular Biology Reports
○
19 papers in training set
Top 0.5%
0.8%
23
HardwareX
○
16 papers in training set
Top 0.3%
0.8%
24
Poultry Science
○
10 papers in training set
Top 0.2%
0.8%
25
Frontiers in Microbiology
○
375 papers in training set
Top 9%
0.8%
26
Applied Microbiology and Biotechnology
○
26 papers in training set
Top 0.2%
0.7%
27
Frontiers in Plant Science
○
240 papers in training set
Top 6%
0.7%
28
Biology
○
43 papers in training set
Top 3%
0.7%
29
Journal of Clinical Virology
○
62 papers in training set
Top 1.0%
0.7%
30
Methods in Ecology and Evolution
○
160 papers in training set
Top 3%
0.5%