Back

Shifting Dynamics of DENV2 in Costa Rica: Emergence of the Cosmopolitan Genotype (2024)

Gonzalez Elizondo, M.; Picado Soto, D.; Cordero Laurent, E.; Duarte Martinez, F.; Alcantara, L. C. J.; Fonseca, V.; Mendez Rico, J.; Lourenco, J.; Franco, L.; Giovanetti, M.; Soto Garita, C.

2025-05-29 infectious diseases
10.1101/2025.05.28.25328475 medRxiv
Show abstract

Dengue remains a major public health challenge. In Costa Rica, we implemented the first nationwide genomic surveillance to track the emergence of the DENV2 Cosmopolitan genotype. Phylogenetic and eco-epidemiological analyses revealed early detection, climate-linked spread, and spatial heterogeneity. Findings underscore the need for integrated surveillance to guide adaptive responses to emerging arboviral threats.

Matching journals

The top 7 journals account for 50% of the predicted probability mass.

1
PLOS Neglected Tropical Diseases
● 466 papers in training set
Top 0.9%
11.7%
Similar papers in this journal
2
Virus Evolution
◐ 155 papers in training set
Top 0.2%
9.6%
Similar papers in this journal
3
Emerging Infectious Diseases
● 105 papers in training set
Top 0.1%
9.5%
Similar papers in this journal
4
Nature Communications
○ 5641 papers in training set
Top 25%
6.2%
Similar papers in this journal
5
Emerging Microbes & Infections
○ 74 papers in training set
Top 0.2%
5.1%
Similar papers in this journal
6
The Journal of Infectious Diseases
◐ 202 papers in training set
Top 0.8%
4.3%
7
mBio
● 833 papers in training set
Top 5%
4.0%
50% of probability mass above
8
The Lancet Infectious Diseases
○ 73 papers in training set
Top 0.3%
3.4%
9
Proceedings of the National Academy of Sciences
● 2444 papers in training set
Top 16%
3.2%
10
Science Advances
● 1243 papers in training set
Top 11%
3.2%
11
Viruses
○ 332 papers in training set
Top 2%
2.6%
12
PLOS Pathogens
● 820 papers in training set
Top 5%
2.4%
13
mSphere
● 302 papers in training set
Top 4%
1.9%
14
Cell Reports
○ 1498 papers in training set
Top 20%
1.7%
15
Science Translational Medicine
● 127 papers in training set
Top 2%
1.7%
16
Science
● 477 papers in training set
Top 6%
1.5%
17
Journal of Medical Virology
○ 140 papers in training set
Top 2%
1.1%
18
Microbiology Spectrum
● 469 papers in training set
Top 9%
1.1%
19
Scientific Reports
○ 3612 papers in training set
Top 65%
1.1%
20
BMC Infectious Diseases
○ 133 papers in training set
Top 3%
1.1%
21
PLOS Global Public Health
● 344 papers in training set
Top 7%
1.1%
22
The Lancet Regional Health - Americas
○ 22 papers in training set
Top 0.5%
1.0%
23
Cell
○ 431 papers in training set
Top 9%
1.0%
24
Open Forum Infectious Diseases
◐ 142 papers in training set
Top 3%
0.9%
25
Nature Microbiology
○ 155 papers in training set
Top 3%
0.9%
26
iScience
○ 1154 papers in training set
Top 37%
0.8%
27
The American Journal of Tropical Medicine and Hygiene
● 68 papers in training set
Top 2%
0.8%
28
Nature Medicine
○ 125 papers in training set
Top 4%
0.8%
29
Heliyon
○ 152 papers in training set
Top 8%
0.8%
30
eLife
● 5828 papers in training set
Top 71%
0.6%

"Similar papers" are the closest papers from that journal in the model's embedding space. They show what the match is built on, but the ranking comes mostly from a classifier over the whole training set, not from these examples alone.