Back

Generation of a Ym1 Deficient Mouse utilising CRISPR-Cas9 in CB6 Embryos

Parkinson, J. E.; Baldwin, G. E.; Papotto, P. H.; Humphreys, N. E.; Adamson, A. D.; Allen, J. E.; Sutherland, T. E.

2025-03-13 genetics
10.1101/2025.03.10.642405 bioRxiv
Show abstract

Chitinase-like proteins (CLPs) are of wide interest due to their significant roles during both biological and pathological processes. Human CLPs such as YKL-40 have been suggested as biomarkers of disease severity in many conditions. Murine CLPs include Brp39, Ym1, and Ym2 and these are similarly upregulated in multiple mouse models of pathology. Investigation of these molecules, particularly Ym1 and Ym2, is plagued by complexity in the genomic locus due to recent gene duplication events in the C57BL/6 strain. Using a novel CRISPR-Cas9 targeting approach involving CB6 mixed background embryos, we generated a Ym1 deficient mouse. Validation using flow cytometry, ELISA, and immunofluorescence confirmed no expression of mature Ym1 protein with no alteration in the expression of related chitinases/CLP genes including Chia and Chil4. This new transgenic mouse line will be key for investigating CLP functions and the genetic approach utilised may provide a useful strategy for other genes which show differences between inbred mouse strains.

Matching journals

The top 5 journals account for 50% of the predicted probability mass.

1
Disease Models & Mechanisms
119 papers in training set
Top 0.1%
23.2%
2
Human Molecular Genetics
130 papers in training set
Top 0.2%
8.7%
3
PLOS ONE
4510 papers in training set
Top 21%
8.7%
4
Scientific Reports
3102 papers in training set
Top 15%
6.6%
5
Frontiers in Genetics
197 papers in training set
Top 2%
4.1%
50% of probability mass above
6
PLOS Genetics
756 papers in training set
Top 6%
2.7%
7
Aging
69 papers in training set
Top 0.9%
2.5%
8
Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease
25 papers in training set
Top 0.2%
2.1%
9
Virulence
21 papers in training set
Top 0.1%
1.9%
10
Human Mutation
29 papers in training set
Top 0.4%
1.7%
11
EMBO Molecular Medicine
85 papers in training set
Top 2%
1.7%
12
Biochemistry and Biophysics Reports
28 papers in training set
Top 0.5%
1.7%
13
Frontiers in Cell and Developmental Biology
218 papers in training set
Top 4%
1.7%
14
Frontiers in Medicine
113 papers in training set
Top 4%
1.5%
15
Biomedicines
66 papers in training set
Top 1%
1.4%
16
BMC Genomics
328 papers in training set
Top 4%
1.0%
17
Frontiers in Cellular and Infection Microbiology
98 papers in training set
Top 4%
1.0%
18
Journal of Medical Virology
137 papers in training set
Top 3%
0.9%
19
International Journal of Molecular Sciences
453 papers in training set
Top 12%
0.9%
20
Cells
232 papers in training set
Top 5%
0.9%
21
GeroScience
97 papers in training set
Top 1%
0.8%
22
Biology
43 papers in training set
Top 2%
0.8%
23
Experimental Eye Research
30 papers in training set
Top 0.5%
0.8%
24
Orphanet Journal of Rare Diseases
18 papers in training set
Top 0.7%
0.7%
25
Neurobiology of Disease
134 papers in training set
Top 4%
0.7%
26
Genetic Epidemiology
46 papers in training set
Top 0.9%
0.7%
27
Open Biology
95 papers in training set
Top 3%
0.7%
28
Cell Death Discovery
51 papers in training set
Top 2%
0.5%
29
The FEBS Journal
78 papers in training set
Top 1%
0.5%
30
The American Journal of Pathology
31 papers in training set
Top 0.7%
0.5%