Back

Stress response of membrane-based cell organelles in budding yeast

Sheng, P.; Bai, z. L.; Cao, H.; Li, D.

2024-09-08 cell biology Community evaluation
10.1101/2024.09.08.611912 bioRxiv
Show abstract

The organelles of yeast demonstrate diverse morphological traits in response to different stress stimuli. However, there is a lack of systematic reports on the structural changes induced by stress stimuli in all membrane-based organelles. Here, we utilized a set of fluorescent protein-based organelle markers to highlight the distinct characteristics of yeast under various stress triggers, including high temperature, hydrogen peroxide, acetic acid, and ethyl alcohol. We found that all of these organelles undergo alterations in structure or function in response to the four stress triggers we tested. Specifically, filamentous mitochondria rupture into smaller segments when exposed to the above four stress conditions. The structure of the endoplasmic reticulum (ER) remains relatively unchanged, but its function is affected. Additionally, high temperature and hydrogen peroxide can induce the Ire1p-mediated ER unfolded protein response (UPR). The translocation of most nuclear-localized proteins to the cytosol is dependent on the specific stress conditions employed. Under the above stress conditions, the vacuole undergoes fusion, resulting in the formation of a larger vacuole from multiple smaller ones. Meanwhile, acetic acid-induced stress leads to the translocation of vacuole-localized proteins Prc1p and Pep4p to unknown puncta, while Ybh3p relocates from the inner vacuole to the vacuole membrane. Proteins localized in the early Golgi, late Golgi, and late endosomes exhibit distinct traits, such as fading away or mis-localization. The structure and function of peroxisomes, lipid droplets, and autophagosomes also undergo modifications. Furthermore, upon exposure to high temperature and ethanol, apoptosis-related proteins Yca1, Aif1, and Mmi1 aggregate instead of remaining dispersed.

Matching journals

The top 14 journals account for 50% of the predicted probability mass.

1
Scientific Reports
3102 papers in training set
Top 13%
7.0%
2
Frontiers in Cell and Developmental Biology
218 papers in training set
Top 0.6%
6.5%
3
International Journal of Molecular Sciences
453 papers in training set
Top 0.6%
6.5%
4
Molecular Biology of the Cell
272 papers in training set
Top 0.3%
6.5%
5
Biology of the Cell
11 papers in training set
Top 0.1%
5.0%
6
PLOS ONE
4510 papers in training set
Top 42%
3.1%
7
Biochimica et Biophysica Acta (BBA) - Molecular Cell Research
28 papers in training set
Top 0.1%
2.7%
8
Biochemical and Biophysical Research Communications
78 papers in training set
Top 0.3%
2.1%
9
Cells
232 papers in training set
Top 1%
2.1%
10
Journal of Cell Science
353 papers in training set
Top 0.8%
2.1%
11
Cell Death Discovery
51 papers in training set
Top 0.4%
1.9%
12
Advanced Biology
29 papers in training set
Top 0.2%
1.9%
13
Metallomics
11 papers in training set
Top 0.1%
1.7%
14
eLife
5422 papers in training set
Top 42%
1.7%
50% of probability mass above
15
Journal of Biological Chemistry
641 papers in training set
Top 2%
1.5%
16
Cell Structure and Function
11 papers in training set
Top 0.1%
1.5%
17
Frontiers in Molecular Biosciences
100 papers in training set
Top 2%
1.5%
18
Biochimica et Biophysica Acta (BBA) - Molecular and Cell Biology of Lipids
15 papers in training set
Top 0.1%
1.4%
19
Journal of Proteome Research
215 papers in training set
Top 1%
1.4%
20
iScience
1063 papers in training set
Top 19%
1.4%
21
Cell Death & Disease
126 papers in training set
Top 2%
1.1%
22
Molecular and Cellular Biology
40 papers in training set
Top 0.2%
1.1%
23
Mitochondrion
11 papers in training set
Top 0.1%
1.0%
24
Communications Biology
886 papers in training set
Top 16%
1.0%
25
Microbiology Spectrum
435 papers in training set
Top 4%
0.9%
26
Experimental Cell Research
24 papers in training set
Top 0.2%
0.9%
27
Heliyon
146 papers in training set
Top 5%
0.8%
28
International Journal of Biological Macromolecules
65 papers in training set
Top 3%
0.8%
29
Frontiers in Plant Science
240 papers in training set
Top 5%
0.8%
30
Molecular and Cellular Neuroscience
18 papers in training set
Top 0.5%
0.8%