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A new alignment-free method: Subsequence Correlation Coefficient Vector(SCCFV) for influenza A comparison using virus genomes

He, L.; Yu, Z.; Wu, X.; Zhu, Y.

2024-07-16 bioinformatics
10.1101/2024.07.12.603253 bioRxiv
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Withdrawal StatementThe authors have withdrawn their manuscript because I discovered some important missing data that is crucial for supporting my viewpoint and research findings. Although I tried to supplement this data through other means, I was unable to complete it before the deadline. Therefore, the authors do not wish this work to be cited as reference for the project. If you have any questions, please contact the corresponding author.

Matching journals

The top 6 journals account for 50% of the predicted probability mass.

1
PLOS ONE
● 5266 papers in training set
Top 5%
27.3%
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2
Informatics in Medicine Unlocked
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Top 0.1%
8.1%
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3
Computers in Biology and Medicine
○ 128 papers in training set
Top 0.5%
5.7%
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4
PLOS Computational Biology
● 1863 papers in training set
Top 9%
3.5%
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5
Scientific Reports
○ 3612 papers in training set
Top 29%
3.3%
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6
BMC Bioinformatics
○ 457 papers in training set
Top 2%
3.3%
50% of probability mass above
7
BioMed Research International
○ 28 papers in training set
Top 0.4%
3.2%
8
PeerJ
◐ 308 papers in training set
Top 3%
2.8%
9
Briefings in Bioinformatics
◐ 354 papers in training set
Top 3%
2.5%
10
Computational Biology and Chemistry
○ 28 papers in training set
Top 0.3%
1.8%
11
Mathematical Biosciences and Engineering
● 23 papers in training set
Top 0.6%
1.4%
12
JMIRx Med
◐ 32 papers in training set
Top 1%
1.4%
13
Computational and Structural Biotechnology Journal
● 242 papers in training set
Top 4%
1.2%
14
Bioinformatics
◐ 1204 papers in training set
Top 8%
1.1%
15
IEEE/ACM Transactions on Computational Biology and Bioinformatics
● 38 papers in training set
Top 0.8%
1.1%
16
Archives of Clinical and Biomedical Research
○ 28 papers in training set
Top 0.9%
1.0%
17
IEEE Access
● 35 papers in training set
Top 1%
1.0%
18
Frontiers in Microbiology
○ 427 papers in training set
Top 8%
0.9%
19
Physica A: Statistical Mechanics and its Applications
○ 13 papers in training set
Top 0.2%
0.9%
20
F1000Research
○ 88 papers in training set
Top 3%
0.9%
21
Heliyon
○ 152 papers in training set
Top 7%
0.9%
22
Genomics
○ 64 papers in training set
Top 2%
0.9%
23
Frontiers in Genetics
○ 230 papers in training set
Top 6%
0.6%
24
Chaos, Solitons & Fractals
○ 32 papers in training set
Top 0.9%
0.6%

"Similar papers" are the closest papers from that journal in the model's embedding space. They show what the match is built on, but the ranking comes mostly from a classifier over the whole training set, not from these examples alone.