Back

Designing a novel Scaffold-Based Multi-Epitope Vaccine to Combat Melioidosis Caused by Burkholderia pseudomallei: An In-silico and Immunoinformatics approach

Rahman, S.; Das, A.; Das, A. K.; Hazra, D.; Roychowdhury, A.

2024-06-22 bioinformatics
10.1101/2024.06.18.599592 bioRxiv
Show abstract

Burkholderia pseudomallei, the gram-negative bacteria causing melioidosis, is becoming a serious threat to healthcare settings. In recent years, B. pseudomallei has been identified as an emerging and significant etiological agent responsible for localized pyogenic infections primarily observed in India and South Asia. At present, no vaccine against melioidosis is available in the treatment system. This study has undertaken an in-silico reverse vaccinology approach to design a novel multi-epitope vaccine for treating B. pseudomallei-mediated infections. B-cell and T-cell epitopes have been predicted and stitched to develop a multi-epitope vaccine. The predicted vaccine is found to be non-toxic, non-allergic, and immunogenic in nature. Immune simulation results indicate that the designed vaccine can generate an immune response resembling a real-life scenario. The 610 amino-acid long vaccine construct has been codon-optimized and could be cloned in the E. coli K12 system. These findings from this immunoinformatics study offer a foundation for developing a tailored, safe, and potent vaccine targeting B. pseudomallei.

Matching journals

The top 6 journals account for 50% of the predicted probability mass.

1
PLOS ONE
5266 papers in training set
Top 10%
18.5%
2
Journal of Immunology Research
12 papers in training set
Top 0.1%
17.0%
3
Frontiers in Immunology
638 papers in training set
Top 2%
5.5%
4
Journal of Biomolecular Structure and Dynamics
43 papers in training set
Top 0.3%
4.9%
5
Vaccines
198 papers in training set
Top 0.8%
4.0%
6
Briefings in Bioinformatics
354 papers in training set
Top 3%
3.2%
50% of probability mass above
7
International Journal of Biological Macromolecules
76 papers in training set
Top 0.6%
2.6%
8
International Journal of Molecular Sciences
494 papers in training set
Top 5%
2.4%
9
Scientific Reports
3612 papers in training set
Top 44%
2.4%
10
Computers in Biology and Medicine
128 papers in training set
Top 2%
2.4%
11
PLOS Neglected Tropical Diseases
466 papers in training set
Top 3%
2.1%
12
Microbiology Spectrum
469 papers in training set
Top 7%
1.5%
13
Infection, Genetics and Evolution
42 papers in training set
Top 0.5%
1.5%
14
Travel Medicine and Infectious Disease
14 papers in training set
Top 0.2%
1.3%
15
Informatics in Medicine Unlocked
22 papers in training set
Top 0.9%
1.1%
16
Genomics
64 papers in training set
Top 1%
1.1%
17
Computational and Structural Biotechnology Journal
242 papers in training set
Top 5%
1.1%
18
Viruses
332 papers in training set
Top 4%
1.1%
19
Antibiotics
34 papers in training set
Top 0.9%
1.0%
20
PLOS Computational Biology
1863 papers in training set
Top 20%
0.8%
21
Life Sciences
27 papers in training set
Top 1%
0.8%
22
Gigabyte
62 papers in training set
Top 1%
0.8%
23
Molecular Immunology
14 papers in training set
Top 0.3%
0.6%
24
Microorganisms
106 papers in training set
Top 4%
0.6%
25
Frontiers in Veterinary Science
32 papers in training set
Top 0.8%
0.6%
26
Frontiers in Microbiology
427 papers in training set
Top 9%
0.6%
27
BioMed Research International
28 papers in training set
Top 2%
0.6%
28
F1000Research
88 papers in training set
Top 5%
0.6%
29
Biochimica et Biophysica Acta (BBA) - General Subjects
18 papers in training set
Top 0.5%
0.6%
30
Journal of Medical Virology
140 papers in training set
Top 3%
0.6%