Back

High resolution live cell imaging to define ultrastructural and dynamic features of the halotolerant yeast Debaryomyces hansenii

Xelhuantzi, M. S. C.; Ghete, D.; Milburn, A.; Ioannou, S.; Mudd, P.; Calder, G.; Ramos, J.; O'Toole, P. J.; Genever, P. G.; MacDonald, C.

2024-03-01 cell biology
10.1101/2024.03.01.582977 bioRxiv
Show abstract

Although some budding yeasts have proved tractable and intensely studied models, others are more recalcitrant. Debaryomyces hansenii, an important yeast species in food and biotechnological industries with curious physiological characteristics, has proved difficult to manipulate genetically and remains poorly defined. To remedy this, we have combined live cell fluorescent dyes with high resolution imaging techniques to define the sub-cellular features of D. hansenii, such as the mitochondria, nuclei, vacuoles and the cell wall. Using these tools, we define biological processes like the cell cycle, organelle inheritance and different membrane trafficking pathways of D. hansenii for the first time. Beyond this, reagents designed to study Saccharomyces cerevisiae proteins were used to access proteomic information about D. hansenii. Finally, we optimised the use of label free holotomography to image yeast, defining the physical parameters and visualising sub-cellular features like membranes and vacuoles. Not only does this work shed light on D. hansenii but this combinatorial approach serves as a template for how other cell biological systems, which are not amenable to standard genetic procedures, can be studied.

Matching journals

The top 11 journals account for 50% of the predicted probability mass.

1
Open Biology
95 papers in training set
Top 0.1%
8.5%
2
Molecular Biology of the Cell
272 papers in training set
Top 0.3%
6.5%
3
Journal of Cell Science
353 papers in training set
Top 0.2%
6.5%
4
Biology of the Cell
11 papers in training set
Top 0.1%
4.9%
5
Scientific Reports
3102 papers in training set
Top 23%
4.9%
6
Yeast
15 papers in training set
Top 0.1%
4.4%
7
ACS Synthetic Biology
256 papers in training set
Top 0.9%
3.6%
8
PLOS ONE
4510 papers in training set
Top 38%
3.6%
9
eLife
5422 papers in training set
Top 29%
3.1%
10
Advanced Biology
29 papers in training set
Top 0.2%
2.4%
11
Nature Communications
4913 papers in training set
Top 46%
2.1%
50% of probability mass above
12
Journal of Fungi
31 papers in training set
Top 0.2%
2.1%
13
Frontiers in Cellular and Infection Microbiology
98 papers in training set
Top 2%
2.1%
14
Journal of Cell Biology
333 papers in training set
Top 2%
1.9%
15
Frontiers in Cell and Developmental Biology
218 papers in training set
Top 3%
1.9%
16
Frontiers in Bioengineering and Biotechnology
88 papers in training set
Top 1%
1.8%
17
Glycobiology
30 papers in training set
Top 0.1%
1.7%
18
mSphere
281 papers in training set
Top 4%
1.3%
19
Cells
232 papers in training set
Top 3%
1.3%
20
Methods
29 papers in training set
Top 0.3%
1.2%
21
Molecular & Cellular Proteomics
158 papers in training set
Top 1%
1.2%
22
Heliyon
146 papers in training set
Top 5%
0.9%
23
BMC Biology
248 papers in training set
Top 3%
0.9%
24
Cell Reports Methods
141 papers in training set
Top 4%
0.9%
25
iScience
1063 papers in training set
Top 26%
0.9%
26
Frontiers in Molecular Biosciences
100 papers in training set
Top 4%
0.8%
27
mBio
750 papers in training set
Top 10%
0.8%
28
Life Science Alliance
263 papers in training set
Top 1%
0.8%
29
Journal of Proteome Research
215 papers in training set
Top 2%
0.8%
30
Current Biology
596 papers in training set
Top 14%
0.8%