Back

KASP-PCR method to screen thrombophilia genetic risk factors

Altwayan, R.; Tombuloglu, H.; Alhusil, A.; Awadh, T.; Altwayan, M.; Albaqawi, H.; Aldossary, N.; Unver, T.

2023-10-25 genetic and genomic medicine
10.1101/2023.10.25.23297518 medRxiv
Show abstract

Thrombophilia is defined as the willingness of blood to clot easily in a situation of imbalances between fibrinolysis and coagulation. It is classified as inherited and acquired thrombophilia. Several studies revealed that the inherited thrombophilia is strongly associated with single nucleotide polymorphisms (SNP) or deletions on certain genes, such as FV Leiden (rs6025), MTHFR1 (rs1801133), MTHFR2 (rs1801131), Serpine-1 (rs1799768), and Factor II (rs1799963). This study aims to develop an SNP detection panel based on Kompetitive Allele Specific Primer-polymerase chain reaction (KASP-PCR) technique. Results revealed that 86.5% of susceptible patients (n = 111) contain at least one mutation; while seven of them harbor three thrombophilia-associated mutations simultaneously. A clear allelic discrimination was observed for all tested samples. The prevalence of each mutation among different countries and ethnic groups are in line with the findings of this study. Rather than expensive and time-consuming approaches, the current assay enables the cost-effective advantage of the KASP-PCR, which reduces the diagnostic cost with a fast and convenient way. After clinical validation and approval, it can be used in hospitals, research centers, and diagnostic laboratories to determine the genetic susceptibility of individuals to thrombosis and for research purposes.

Matching journals

The top 6 journals account for 50% of the predicted probability mass.

1
PLOS ONE
5266 papers in training set
Top 9%
19.0%
2
Molecular Biology Reports
21 papers in training set
Top 0.1%
12.2%
3
Heliyon
152 papers in training set
Top 0.1%
8.1%
4
Scientific Reports
3612 papers in training set
Top 10%
6.9%
5
Informatics in Medicine Unlocked
22 papers in training set
Top 0.2%
3.6%
6
Gene
46 papers in training set
Top 0.3%
3.3%
50% of probability mass above
7
Frontiers in Genetics
230 papers in training set
Top 2%
2.5%
8
Genes
144 papers in training set
Top 1%
2.5%
9
Cureus
68 papers in training set
Top 2%
2.2%
10
Biomedicines
67 papers in training set
Top 0.7%
2.2%
11
International Journal of Molecular Sciences
494 papers in training set
Top 7%
1.8%
12
Journal of Clinical Medicine
97 papers in training set
Top 2%
1.8%
13
Frontiers in Medicine
120 papers in training set
Top 2%
1.7%
14
Frontiers in Bioengineering and Biotechnology
98 papers in training set
Top 1%
1.7%
15
Journal of Medical Virology
140 papers in training set
Top 2%
1.5%
16
F1000Research
88 papers in training set
Top 2%
1.4%
17
Gene Reports
14 papers in training set
Top 0.4%
1.4%
18
BioMed Research International
28 papers in training set
Top 1%
1.2%
19
Diagnostics
50 papers in training set
Top 2%
1.2%
20
Frontiers in Molecular Biosciences
102 papers in training set
Top 2%
1.0%
21
Journal of Personalized Medicine
28 papers in training set
Top 0.9%
1.0%
22
Genomics
64 papers in training set
Top 2%
0.9%
23
Frontiers in Oncology
103 papers in training set
Top 3%
0.9%
24
Brain and Behavior
43 papers in training set
Top 2%
0.9%
25
Computational and Structural Biotechnology Journal
242 papers in training set
Top 6%
0.9%
26
Journal of Bioinformatics and Systems Biology
15 papers in training set
Top 0.2%
0.9%
27
BMC Medical Genomics
50 papers in training set
Top 1%
0.6%
28
Human Mutation
34 papers in training set
Top 0.6%
0.6%
29
Journal of the American Heart Association
140 papers in training set
Top 4%
0.6%
30
BMC Genomics
406 papers in training set
Top 9%
0.6%