Back

shRNA drop-out screen identifies BRD4 targeting transcription from RNA polymerase II system to activate β-catenin to promote soft-tissue tumor proliferations

Sun, S. Y.; Tsiperson, V.

2023-07-15 cancer biology Community evaluation
10.1101/2023.07.14.548690 bioRxiv
Show abstract

BRD4 (Bromodomain containing protein 4) is a chromatin reader binds to acetylated lysine residues on histones interacting with RNA Pol II, p-TFeb. PDGF-BB was presented here, in soft-tissue tumor, as an oncogenic factor driving cell proliferation, and aberrant BRD4 knockdown significantly reduced tumor aggressiveness and unfavorable prognosis in soft-tissue tumors. To identify suppressive key drivers impeding demoid tumor growth, shRNA drop-out screen analysis identified signature of "transcription from RNA polymerase II promoter" including DDX, Stat3, SMARCA, ATM, SIRT1, cMyc that were recruited with BRD4 interation in activating {beta}-catenin, which is a major key driver mutated in soft-tissue tumor, and its depletion ceased soft-tissue tumor cell growth. Sepcifically, BRD4 mediated PDGF-BB signaling in GSK stimulation through transcriptional regulation from RNA polymerase II activity with PI3K as target, and thus not only canonical {beta} -catenin/TCF4 signaling, but also non-canonical {beta} -catenin conjunction complex response was activated by BRD4 in nucleus involved in promoting cell proliferation. Our study delineated a signaling axis that may allow soft-tissue tumor cells to escape apoptosis during colonization by activating PDGFBB-BRD4-GSK-{beta} -catenin and non-canonical-{beta}-catenin pathway through BRD4 in cancer cells. An efficient treatment for soft-tissue tumors could be accomplished by targeting PDGF and BRD4 survival pathways on soft-tissue tumor cells.

Matching journals

The top 12 journals account for 50% of the predicted probability mass.

1
Experimental Cell Research
28 papers in training set
Top 0.1%
8.8%
2
PLOS ONE
5266 papers in training set
Top 22%
7.8%
3
Cancers
213 papers in training set
Top 1%
5.4%
4
Cell Death & Disease
126 papers in training set
Top 0.4%
5.1%
5
Scientific Reports
3612 papers in training set
Top 21%
4.8%
6
eLife
5828 papers in training set
Top 30%
4.0%
7
Frontiers in Oncology
103 papers in training set
Top 0.9%
4.0%
8
International Journal of Molecular Sciences
494 papers in training set
Top 4%
3.2%
9
Cells
249 papers in training set
Top 2%
2.4%
10
Oncogenesis
12 papers in training set
Top 0.1%
1.9%
11
Biomedicines
67 papers in training set
Top 0.9%
1.9%
12
Molecular and Cellular Biology
47 papers in training set
Top 0.4%
1.7%
50% of probability mass above
13
Translational Oncology
21 papers in training set
Top 0.4%
1.7%
14
Oncogene
85 papers in training set
Top 1%
1.7%
15
BMC Cancer
67 papers in training set
Top 1%
1.5%
16
Cell Communication and Signaling
51 papers in training set
Top 0.7%
1.4%
17
Frontiers in Cell and Developmental Biology
233 papers in training set
Top 3%
1.3%
18
Bioscience Reports
27 papers in training set
Top 0.8%
1.3%
19
Genes to Cells
25 papers in training set
Top 0.4%
1.1%
20
Cell Death Discovery
58 papers in training set
Top 1.0%
1.1%
21
Journal of Cellular Biochemistry
11 papers in training set
Top 0.1%
1.1%
22
Neoplasia
23 papers in training set
Top 0.6%
1.1%
23
Frontiers in Molecular Biosciences
102 papers in training set
Top 2%
1.0%
24
PeerJ
308 papers in training set
Top 9%
1.0%
25
Molecular Cancer Research
49 papers in training set
Top 1%
1.0%
26
International Journal of Biological Sciences
10 papers in training set
Top 0.1%
0.9%
27
Oncotarget
18 papers in training set
Top 0.5%
0.8%
28
Biology Open
156 papers in training set
Top 4%
0.8%
29
Journal of Biological Chemistry
690 papers in training set
Top 9%
0.8%
30
Aging
75 papers in training set
Top 2%
0.8%