Evaluating an epidemiologically motivated surrogate model of a multi-model ensemble
Abbott, S.; Sherratt, K.; Bosse, N.; Gruson, H.; Bracher, J.; Funk, S.
Show abstract
Multi-model and multi-team ensemble forecasts have become widely used to generate reliable short-term predictions of infectious disease spread. Notably, various public health agencies have used them to leverage academic disease modelling during the COVID-19 pandemic. However, ensemble forecasts are difficult to interpret and require extensive effort from numerous participating groups as well as a coordination team. In other fields, resource usage has been reduced by training simplified models that reproduce some of the observed behaviour of more complex models. Here we used observations of the behaviour of the European COVID-19 Forecast Hub ensemble combined with our own forecasting experience to identify a set of properties present in current ensemble forecasts. We then developed a parsimonious forecast model intending to mirror these properties. We assess forecasts generated from this model in real time over six months (the 15th of January 2022 to the 19th of July 2022) and for multiple European countries. We focused on forecasts of cases one to four weeks ahead and compared them to those by the European forecast hub ensemble. We find that the surrogate model behaves qualitatively similarly to the ensemble in many instances, though with increased uncertainty and poorer performance around periods of peak incidence (as measured by the Weighted Interval Score). The performance differences, however, seem to be partially due to a subset of time points, and the proposed model appears better probabilistically calibrated than the ensemble. We conclude that our simplified forecast model may have captured some of the dynamics of the hub ensemble, but more work is needed to understand the implicit epidemiological model that it represents.
Matching journals
The top 4 journals account for 50% of the predicted probability mass.
Similar papers in this journal
- A prospective real-time transfer learning approach to estimate Influenza hospitalizations with limited data 95%
- Demonstrating multi-country calibration of a tuberculosis model using new history matching and emulation package - hmer 95%
- Fast and Trustworthy Nowcasting of Dengue Fever: A Case Study Using Attention-Based Probabilistic Neural Networks in Sao Paulo, Brazil 94%
Similar papers in this journal
- Forecasting influenza incidence as an ordinal variable using machine learning 93%
- Baseline nowcasting methods for handling delays in epidemiological data 90%
- TRACKing Excess Deaths (TRACKED): an interactive online tool to monitor excess deaths associated with COVID-19 pandemic in the United Kingdom 89%
Similar papers in this journal
- The impact of policy timing on the spread of COVID-19 92%
- Switched forced SEIRDV compartmental models to monitor COVID-19 spread and immunization in Italy 92%
- Analysis of Intervention Effectiveness Using Early Outbreak Transmission Dynamics to Guide Future Pandemic Management and Decision-Making in Kuwait 92%
"Similar papers" are the closest papers from that journal in the model's embedding space. They show what the match is built on, but the ranking comes mostly from a classifier over the whole training set, not from these examples alone.