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In-silico analysis of regulatory proteins involved in tricarboxylic acid cycleof Arabidopsis thaliana and structural analysis by Alphafold and othersoftware

Nayab, H.; Asim, N.; Shafique, F.; ul Hassan, M.; Butt, S.; Akbar, N.

2022-10-10 biochemistry
10.1101/2022.10.10.511595 bioRxiv
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Withdrawal StatementThe authors have withdrawn this manuscript because experiments are being repeated to validate the data. Therefore, the authors do not wish this work to be cited as reference for the project. If you have any questions, please contact the corresponding author.

Matching journals

The top 5 journals account for 50% of the predicted probability mass.

1
PLOS ONE
● 5266 papers in training set
Top 8%
19.4%
Similar papers in this journal
2
Journal of Biomolecular Structure and Dynamics
○ 43 papers in training set
Top 0.1%
15.9%
Similar papers in this journal
3
BMC Genomics
○ 406 papers in training set
Top 0.8%
6.6%
Similar papers in this journal
4
Scientific Reports
○ 3612 papers in training set
Top 13%
5.8%
Similar papers in this journal
5
Bioscience Reports
● 27 papers in training set
Top 0.2%
3.4%
50% of probability mass above
6
International Journal of Molecular Sciences
○ 494 papers in training set
Top 3%
3.4%
Similar papers in this journal
7
Plant Physiology and Biochemistry
○ 20 papers in training set
Top 0.3%
2.5%
8
Plants
○ 43 papers in training set
Top 0.6%
2.2%
9
Heliyon
○ 152 papers in training set
Top 2%
2.2%
10
Genes
○ 144 papers in training set
Top 2%
1.8%
11
Plant Science
○ 31 papers in training set
Top 0.5%
1.8%
12
International Journal of Biological Macromolecules
○ 76 papers in training set
Top 1.0%
1.6%
13
Biosystems
○ 31 papers in training set
Top 0.3%
1.4%
14
Frontiers in Plant Science
○ 256 papers in training set
Top 3%
1.2%
15
Archives of Biochemistry and Biophysics
○ 15 papers in training set
Top 0.2%
1.2%
16
Agronomy
○ 18 papers in training set
Top 0.5%
1.2%
17
Gene Reports
○ 14 papers in training set
Top 0.4%
1.2%
18
Plant Direct
○ 95 papers in training set
Top 2%
1.2%
19
Frontiers in Molecular Biosciences
○ 102 papers in training set
Top 1%
1.1%
20
Biomolecules
○ 100 papers in training set
Top 2%
1.1%
21
PeerJ
◐ 308 papers in training set
Top 9%
1.0%
22
Biochemical and Biophysical Research Communications
○ 84 papers in training set
Top 2%
0.9%
23
PLOS Computational Biology
● 1863 papers in training set
Top 19%
0.9%
24
Journal of Biosciences
○ 15 papers in training set
Top 0.2%
0.6%
25
Genomics
○ 64 papers in training set
Top 2%
0.6%
26
Biochimie
○ 25 papers in training set
Top 1%
0.5%
27
F1000Research
○ 88 papers in training set
Top 5%
0.5%
28
JMIRx Med
◐ 32 papers in training set
Top 3%
0.5%
29
Life
○ 29 papers in training set
Top 1%
0.5%
30
Molecules
○ 39 papers in training set
Top 2%
0.5%

"Similar papers" are the closest papers from that journal in the model's embedding space. They show what the match is built on, but the ranking comes mostly from a classifier over the whole training set, not from these examples alone.