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Bio-Aurac an open-source browser plugin to better navigate literature content.

Evans, A. J.; Etherington, N. E. J.; Laing, M. P.; Rollings, B.; Sweeton, M. J.; Whitehorn, A. J.; Southan, C.; Holliday, G. L.; Jimenez, R. C.; Dunlop, I. W.

2022-09-26 biochemistry
10.1101/2022.09.23.508995 bioRxiv
Show abstract

SummaryBio-Aurac is an open-source web browser plugin designed to support the research community in drug discovery and life sciences. The tool has been designed to help researchers, scientists, and curators to better explore, navigate and understand content from literature accessing valuable integrated information from third party resources. It identifies, highlights, and provides additionally knowledge for names of biochemical entities like genes and proteins. Availability and ImplementationBio-Aurac has been implemented using a microservice architecture which is open-source and abstracted from non-technical users by utilizing Docker containers (Nust, 2020). It can be run with minimal prerequisites on both Chrome and Firefox browsers. The code for installing and running the web browser plugin can be found here: https://github.com/mdcatapult/bio-aurac (Along with detailed installation instructions). A comprehensive collection of all the code involved in building this open-source project can be found: https://github.com/mdcatapult/aurac-web-plugin, https://github.com/mdcatapult/PDF-Converter, https://github.com/mdcatapult/entity-recognition ContactSoftwareEngineering@md.catapult.org.uk, ian.dunlop@md.catapult.org.uk

Matching journals

The top 3 journals account for 50% of the predicted probability mass.

1
Bioinformatics
1204 papers in training set
Top 0.7%
26.6%
2
Nucleic Acids Research
1281 papers in training set
Top 0.7%
18.5%
3
SoftwareX
15 papers in training set
Top 0.1%
7.9%
50% of probability mass above
4
Journal of Molecular Biology
232 papers in training set
Top 0.2%
6.7%
5
Nature Protocols
33 papers in training set
Top 0.1%
3.5%
6
PLOS ONE
5266 papers in training set
Top 35%
3.5%
7
GigaScience
212 papers in training set
Top 1%
3.2%
8
Bioinformatics Advances
203 papers in training set
Top 3%
2.1%
9
Life Science Alliance
285 papers in training set
Top 3%
1.7%
10
Nature Communications
5641 papers in training set
Top 46%
1.7%
11
eLife
5828 papers in training set
Top 53%
1.4%
12
F1000Research
88 papers in training set
Top 2%
1.3%
13
Protein Science
246 papers in training set
Top 3%
1.3%
14
Nature Methods
385 papers in training set
Top 5%
1.1%
15
Scientific Reports
3612 papers in training set
Top 69%
1.0%
16
iScience
1154 papers in training set
Top 32%
0.9%
17
PeerJ
308 papers in training set
Top 11%
0.8%
18
Database
61 papers in training set
Top 0.9%
0.8%
19
Computational and Structural Biotechnology Journal
242 papers in training set
Top 7%
0.8%
20
Journal of Proteome Research
234 papers in training set
Top 2%
0.8%
21
PLOS Computational Biology
1863 papers in training set
Top 22%
0.6%
22
Human Mutation
34 papers in training set
Top 0.6%
0.6%
23
Communications Biology
993 papers in training set
Top 35%
0.6%
24
International Journal of Molecular Sciences
494 papers in training set
Top 17%
0.6%