Back

Frameshifts may carry oncogenic potential beyond loss of function and categorize genes role in tumor development

Kirov, S.

2022-07-12 genomics
10.1101/2022.07.10.499483 bioRxiv
Show abstract

In this work I present evidence that frameshift mutations represent substantial oncogenic potential across multiple tumor types and may change our understanding of the function of some genes with well established tumor suppressor. I analyzed data deposited in Cbio portal and show that frameshifts, even when they result in the removal of a substantial part of a protein have the potential to create recurring large domains with unknown function. Based on this analysis I propose a novel categorization of genes according to their association with cancer that is more reflective of a complex nature that goes beyond the simple division to tumor suppressors and oncogenes.

Matching journals

The top 8 journals account for 50% of the predicted probability mass.

1
Scientific Reports
3612 papers in training set
Top 0.3%
23.3%
2
Oncotarget
18 papers in training set
Top 0.1%
7.0%
3
International Journal of Molecular Sciences
494 papers in training set
Top 1%
5.7%
4
Computational and Structural Biotechnology Journal
242 papers in training set
Top 0.9%
4.2%
5
BMC Cancer
67 papers in training set
Top 0.6%
3.5%
6
Genomics
64 papers in training set
Top 0.3%
3.4%
7
PLOS ONE
5266 papers in training set
Top 40%
2.8%
8
BMC Medical Genomics
50 papers in training set
Top 0.2%
2.8%
50% of probability mass above
9
F1000Research
88 papers in training set
Top 0.8%
2.5%
10
PeerJ
308 papers in training set
Top 3%
2.5%
11
Frontiers in Genetics
230 papers in training set
Top 2%
2.1%
12
Genes
144 papers in training set
Top 1%
2.0%
13
Cancers
213 papers in training set
Top 3%
1.8%
14
Human Mutation
34 papers in training set
Top 0.3%
1.8%
15
Cell Death Discovery
58 papers in training set
Top 0.6%
1.6%
16
Heliyon
152 papers in training set
Top 4%
1.4%
17
Journal of Medical Genetics
29 papers in training set
Top 0.3%
1.4%
18
Open Biology
106 papers in training set
Top 0.9%
1.2%
19
Cells
249 papers in training set
Top 4%
1.2%
20
Frontiers in Oncology
103 papers in training set
Top 2%
1.2%
21
Frontiers in Molecular Biosciences
102 papers in training set
Top 1%
1.1%
22
Frontiers in Immunology
638 papers in training set
Top 8%
1.0%
23
BMC Genomics
406 papers in training set
Top 7%
1.0%
24
iScience
1154 papers in training set
Top 33%
0.9%
25
Molecular Omics
23 papers in training set
Top 0.3%
0.9%
26
Life
29 papers in training set
Top 1%
0.6%
27
European Journal of Human Genetics
58 papers in training set
Top 1%
0.6%
28
Life Science Alliance
285 papers in training set
Top 8%
0.6%
29
JCO Precision Oncology
14 papers in training set
Top 0.4%
0.6%
30
Journal of Personalized Medicine
28 papers in training set
Top 1%
0.6%