A database and comprehensive analysis of the algae genomes
Fan, G.; Shi, C.; Liu, X.; Han, K.; Peng, L.; Li, L.; Ge, Q.
Show abstract
Algae characterize their high diversity, taxonomy and morphology for wide-used studying the plant origins and terrestrialization, as well as multicellular evolution. Due to the genome assembly challenge of algae caused by symbionts with microbiome, the published algae genomes are relatively less than the terrestrial plants. Here we comprehensively collected and re-annotated 191 available algae genomes distributed in nine major lineages. We systemically investigated the genome features including genome size, assembly continuity and integrity, GC content, abundance of repetitive sequences and protein-coding gene number. We construct the phylogenetic trees using 193 algae genomes, which is consistent with the well-known evolution path that Glaucophyte is the most ancient, going through eight lineages, and finally evolved to terrestrial plants. We also examined the Horizontal Gene Transfer (HGT) genes distribution in algae genomes and provides a substantial genomic resource for functional gene origins and plant evolution.
Matching journals
The top 7 journals account for 50% of the predicted probability mass.
Similar papers in this journal
- Assembly and comparative analysis of the complete mitochondrial genome of three Macadamia species (M. integrifolia, M. ternifolia and M. tetraphylla) 97%
- Genomic diversity of 39 samples of Pyropia species grown in Japan 97%
- In Silico Identification, Characterization and Diversity Analysis of RNAi Genes and their Associated Regulatory Elements in Sweet Orange (Citrus sinensis L) 95%
Similar papers in this journal
- Comparative Analysis, Diversification and Functional Validation of Plant Nucleotide-Binding Site Domain Genes 96%
- The genome of Mekong tiger perch (Datnioides undecimradiatus) provides insights into the phylogenic position of Lobotiformes and biological conservation 95%
- Mitochondrial Genome of Garcinia mangostana L. variety Mesta 94%
Similar papers in this journal
- Novel algal modular LOV domain proteins expand opto-biotechnological avenues for controlling of eukaryotic riboswitching, translational and proteolytic processes. 93%
- Expanding the Egbenema Horizon: Novel Species Discovery in India and First Complete Genome Assembly of the Genus 93%
- Identification and Overexpression of Endogenous Transcription Factors to Enhance Lipid Accumulation in the Commercially Relevant Species Chlamydomonas pacifica 90%
Similar papers in this journal
- Genome-wide interologous interactome map (TeaGPIN) of Camellia sinensis 94%
- The draft chromosome-level genome assembly of tetraploid ground cherry (Prunus fruticosa Pall.) from long reads 93%
- Deep phylo-taxono genomics reveals Xylella as a variant lineage of plant associated Xanthomonas with Stenotrophomonas and Pseudoxanthomonas as misclassified relatives 92%
"Similar papers" are the closest papers from that journal in the model's embedding space. They show what the match is built on, but the ranking comes mostly from a classifier over the whole training set, not from these examples alone.