Serum glycoprotein markers in non-alcoholic steatohepatitis and hepatocellular carcinoma
Ramachandran, P.; Xu, G.; Huang, H. H.-L.; Rice, R.; Zhou, B.; Lindpaintner, K.; Serie, D.
Show abstract
Fatty liver disease progresses through stages of fat accumulation and inflammation to non-alcoholic steatohepatitis (NASH), fibrosis and cirrhosis and eventually hepatocellular carcinoma (HCC). Currently available diagnostic tools for HCC lack sensitivity and specificity and deliver little value to patients. In this study, we investigated the use of circulating serum glycoproteins to identify a panel of potential prognostic markers that may be indicative of progression from the healthy state to NASH and further to HCC. Serum samples were processed using a standard pre-analytical sample preparation protocol and were analyzed using a novel high throughput glycoproteomics platform. We analyzed 413 glycopeptides, representing 57 abundant serum proteins and compared among the three phenotypes. Our initial dataset contained healthy, NASH, and HCC serum samples. We analyzed normalized abundance of common glycoforms and found 40 glycopeptides with statistically significant differences in abundances in NASH and HCC compared to controls. Summary level relative abundance of core-fucosylated, sialylated and branched glycans containing glycopeptides were higher in NASH and HCC as compared to controls. We replicated some of our findings in an independent set of samples of individuals with benign liver conditions and HCC, respectively. Our results may be of value in the management of liver diseases. TOC only O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=95 SRC="FIGDIR/small/462486v2_ufig1.gif" ALT="Figure 1"> View larger version (14K): org.highwire.dtl.DTLVardef@91672corg.highwire.dtl.DTLVardef@cad49org.highwire.dtl.DTLVardef@4496b9org.highwire.dtl.DTLVardef@103615c_HPS_FORMAT_FIGEXP M_FIG C_FIG
Matching journals
The top 6 journals account for 50% of the predicted probability mass.
Similar papers in this journal
- Serum miR-379 expression is related to the development and progression of hypercholesterolemia in non-alcoholic fatty liver disease 95%
- Fucosyltransferase 8 (FUT8) and core fucose expression in oxidative stress response 94%
- GSEA and the coexpression network approach identify novel pathway connections of molecular processes affected in Porto-sinusoidal vascular disease. 94%
Similar papers in this journal
- Deducing the N- and O- glycosylation profile of the spike protein of novel coronavirus SARS-CoV-2 92%
- Contemporary human H3N2 influenza A viruses require a low threshold of suitable glycan receptors for efficient infection 91%
- Comprehensive characterization of N- and O- glycosylation of SARS-CoV-2 human receptor angiotensin converting enzyme 2. 91%
Similar papers in this journal
- Tissue-wide metabolomics reveals wide impact of gut microbiota on mice metabolite composition 93%
- In-depth blood proteome profiling analysis revealed distinct functional characteristics of plasma proteins between severe and non-severe COVID-19 patients 93%
- Glomerular spatial transcriptomics of IgA nephropathy according to the presence of mesangial proliferation 92%
Similar papers in this journal
- Integrative systems biology approach identified crucial genes and transcription factors associated with gallbladder cancer pathogenesis 92%
- The Relationship Between Clinical Profile, Glycemic Parameters And Hypoglycemia In Type 1 Diabetes Pediatric Patients 90%
- Influence of immunosuppressive regimen on diffusivity and oxygenation of kidney transplants – analysis of functional MRI data from the randomized ZEUS trial 89%
"Similar papers" are the closest papers from that journal in the model's embedding space. They show what the match is built on, but the ranking comes mostly from a classifier over the whole training set, not from these examples alone.