Back

Internet of Things Architecture for High Throughput Biology

Parks, D. F.; Voitiuk, K.; Geng, J.; Elliott, M. A. T.; Keefe, M. G.; Jung, E. A.; Robbins, A.; Baudin, P. V.; Ly, V. T.; Hawthorne, N.; Yong, D.; Sanso, S. E.; Rezaee, N.; Sevetson, J. L.; Seiler, S. T.; Currie, R.; Hengen, K. B.; Nowakowski, T. J.; Salama, S. R.; Teodorescu, M.; Haussler, D.

2021-08-01 bioengineering
10.1101/2021.07.29.453595 bioRxiv
Show abstract

The Internet of Things (IoT) provides a simple framework to easily control online devices. IoT is now a commonplace tool used by technology companies, but it is rarely used in biology experiments. IoT can benefit research through alarm notifications, automation, and the real-time monitoring of experiments. We developed and implemented an IoT architecture to control biological devices used in experiments. We developed our own electrophysiology, microscopy, and microfluidic devices so that may be controlled through a unified IoT architecture. The system allows each device to be monitored and controlled through an online web tool. We present our IoT architecture so other labs may replicate it for their own experiments.

Matching journals

The top 3 journals account for 50% of the predicted probability mass.

1
Journal of Open Source Software
25 papers in training set
Top 0.1%
39.7%
2
eneuro
439 papers in training set
Top 1%
5.6%
3
Bioinformatics
1204 papers in training set
Top 4%
5.5%
50% of probability mass above
4
PLOS ONE
5266 papers in training set
Top 28%
5.5%
5
PLOS Computational Biology
1863 papers in training set
Top 8%
4.3%
6
SoftwareX
15 papers in training set
Top 0.1%
3.3%
7
GigaScience
212 papers in training set
Top 1%
3.2%
8
eLife
5828 papers in training set
Top 46%
2.0%
9
Neuroinformatics
46 papers in training set
Top 0.4%
1.7%
10
Computer Methods and Programs in Biomedicine
28 papers in training set
Top 0.5%
1.7%
11
Frontiers in Neuroinformatics
41 papers in training set
Top 0.4%
1.5%
12
Imaging Neuroscience
282 papers in training set
Top 3%
1.5%
13
HardwareX
18 papers in training set
Top 0.2%
1.1%
14
iScience
1154 papers in training set
Top 25%
1.1%
15
Scientific Reports
3612 papers in training set
Top 65%
1.1%
16
Nature Methods
385 papers in training set
Top 5%
1.0%
17
F1000Research
88 papers in training set
Top 3%
1.0%
18
IEEE Access
35 papers in training set
Top 1%
0.8%
19
Nature Communications
5641 papers in training set
Top 56%
0.8%
20
Computational and Structural Biotechnology Journal
242 papers in training set
Top 7%
0.8%
21
PeerJ
308 papers in training set
Top 11%
0.8%
22
Journal of Neuroscience Methods
122 papers in training set
Top 2%
0.8%
23
IFAC-PapersOnLine
13 papers in training set
Top 0.3%
0.6%