Back

ddPCR Reveals SARS-CoV-2 Variants in Florida Wastewater

Gering, E.; Colbert, J.; Schmedes, S.; Duncan, G.; Lopez, J. V.; Motes, J.; Weiss, J.; Azarian, T.; Tekin, O.; Blanton, J.

2021-04-13 epidemiology
10.1101/2021.04.08.21255119 medRxiv
Show abstract

Wastewater was screened for the presence of functionally significant mutations in SARS-CoV-2 associated with emerging variants of concern (VOC) by ddPCR, and results accorded with sequencing of clinical samples from the same region. We propose that PCR-based screening of wastewater can provide a powerful tool for rapid and inexpensive screening of large population segments for VOC-associated mutations and can hone complementary sampling and sequencing of direct (human) test material to track emerging VOC.

Matching journals

The top 14 journals account for 50% of the predicted probability mass.

1
eLife
5828 papers in training set
Top 12%
8.1%
2
PLOS ONE
5266 papers in training set
Top 27%
5.6%
3
PeerJ
308 papers in training set
Top 2%
4.1%
4
Microbial Genomics
225 papers in training set
Top 0.9%
3.3%
5
Nature Communications
5641 papers in training set
Top 34%
3.3%
6
Wellcome Open Research
67 papers in training set
Top 0.2%
3.3%
7
Scientific Reports
3612 papers in training set
Top 32%
3.3%
8
Proceedings of the National Academy of Sciences
2444 papers in training set
Top 17%
3.2%
9
BMC Genomics
406 papers in training set
Top 3%
2.8%
10
Microbiology Spectrum
469 papers in training set
Top 5%
2.8%
11
Science China Life Sciences
29 papers in training set
Top 0.1%
2.7%
12
Nature Biotechnology
172 papers in training set
Top 2%
2.7%
13
Frontiers in Genetics
230 papers in training set
Top 2%
2.5%
14
Viruses
332 papers in training set
Top 2%
2.4%
50% of probability mass above
15
Scientific Data
209 papers in training set
Top 1%
2.2%
16
Data in Brief
14 papers in training set
Top 0.1%
2.2%
17
Journal of Medical Virology
140 papers in training set
Top 1%
2.2%
18
Frontiers in Microbiology
427 papers in training set
Top 4%
2.2%
19
Virus Evolution
155 papers in training set
Top 0.8%
1.9%
20
F1000Research
88 papers in training set
Top 1%
1.8%
21
PLOS Pathogens
820 papers in training set
Top 6%
1.8%
22
Frontiers in Virology
15 papers in training set
Top 0.1%
1.8%
23
Science Advances
1243 papers in training set
Top 19%
1.8%
24
International Journal of Infectious Diseases
129 papers in training set
Top 2%
1.4%
25
Communications Biology
993 papers in training set
Top 18%
1.4%
26
iScience
1154 papers in training set
Top 24%
1.2%
27
mSystems
394 papers in training set
Top 5%
1.2%
28
Cell
431 papers in training set
Top 10%
0.9%
29
Cell Reports
1498 papers in training set
Top 26%
0.9%
30
Journal of Clinical Microbiology
130 papers in training set
Top 1%
0.9%