Back

BBrowser: Making single-cell data easily accessible

Le, T.; Phan, T.; Pham, M.; Tran, D.; Lam, L.; Nguyen, T.; Truong, T.; Vuong, H.; Luu, T.; Phung, N.; Nguyen, T.; Pham, O.; Nguyen, A.; Nguyen, H.; Tran, H.; Tran, L.; Nguyen, H. A.; Tran, T.; Nguyen, N.; Tran, N.; Boysen, C.; Nguyen, U.; Pham, V.; Theodore, K.; Pham, N.; Gill, T.; Pham, S.

2020-12-11 bioinformatics
10.1101/2020.12.11.414136 bioRxiv
Show abstract

BioTurings BBrowser is a software solution that helps scientists effectively analyze single-cell omics data. It combines big data with big computation and modern data visualization to create a unique platform where scientists can interact and obtain important biological insights from the massive amounts of single-cell data. BBrowser has three main components: a curated single-cell database, a big-data analytics layer, and a data visualization module. BBrowser is available for download at: https://bioturing.com/bbrowser/download.

Matching journals

The top 8 journals account for 50% of the predicted probability mass.

1
Bioinformatics
◐ 1204 papers in training set
Top 2%
12.6%
Similar papers in this journal
2
GigaScience
◐ 212 papers in training set
Top 0.2%
7.8%
Similar papers in this journal
3
BMC Bioinformatics
○ 457 papers in training set
Top 1%
6.7%
Similar papers in this journal
4
Bioinformatics Advances
◐ 203 papers in training set
Top 1.0%
5.4%
Similar papers in this journal
5
Database
◐ 61 papers in training set
Top 0.1%
5.4%
Similar papers in this journal
6
Nucleic Acids Research
◐ 1281 papers in training set
Top 4%
5.1%
7
NAR Genomics and Bioinformatics
◐ 242 papers in training set
Top 1%
4.0%
8
Patterns
○ 78 papers in training set
Top 0.6%
3.2%
50% of probability mass above
9
Frontiers in Genetics
○ 230 papers in training set
Top 1%
3.2%
10
PLOS Computational Biology
● 1863 papers in training set
Top 10%
3.2%
11
iScience
○ 1154 papers in training set
Top 10%
2.6%
12
PLOS ONE
● 5266 papers in training set
Top 41%
2.4%
13
Computational and Structural Biotechnology Journal
● 242 papers in training set
Top 3%
2.1%
14
Briefings in Bioinformatics
◐ 354 papers in training set
Top 5%
1.7%
15
eLife
● 5828 papers in training set
Top 50%
1.7%
16
PeerJ
◐ 308 papers in training set
Top 5%
1.7%
17
F1000Research
○ 88 papers in training set
Top 2%
1.5%
18
Frontiers in Bioinformatics
○ 49 papers in training set
Top 0.6%
1.5%
19
Journal of Open Source Software
● 25 papers in training set
Top 0.3%
1.3%
20
STAR Protocols
○ 18 papers in training set
Top 0.2%
1.1%
21
BMC Genomics
○ 406 papers in training set
Top 6%
1.1%
22
Gigabyte
● 62 papers in training set
Top 0.9%
1.1%
23
Nature Protocols
○ 33 papers in training set
Top 0.4%
1.1%
24
Disease Models & Mechanisms
139 papers in training set
Top 2%
1.1%
25
Scientific Reports
○ 3612 papers in training set
Top 64%
1.1%
26
Genome Biology
○ 637 papers in training set
Top 8%
1.0%
27
Journal of Computational Biology
○ 48 papers in training set
Top 1%
0.8%
28
Journal of Bioinformatics and Systems Biology
○ 15 papers in training set
Top 0.3%
0.8%
29
Genomics, Proteomics & Bioinformatics
188 papers in training set
Top 2%
0.6%
30
Biosystems
○ 31 papers in training set
Top 0.7%
0.6%

"Similar papers" are the closest papers from that journal in the model's embedding space. They show what the match is built on, but the ranking comes mostly from a classifier over the whole training set, not from these examples alone.