Back

Two Color Single Molecule Sequencing on GenoCare 1600 Platform to Facilitate Clinical Applications

Chen, F.; Liu, B.; Chen, M.; Jiang, Z.; Zhou, Z.; Wu, P.; Zhang, M.; Jin, H.; Li, L.; Lu, L.; Wang, Q.; Shang, H.; Xie, B.; Liu, L.; Lin, X.; Chen, W.; Xu, J.; Sun, R.; Wang, G.; Zheng, J.; Qi, J.; Yang, B.; Chen, D.; Zeng, L.; Li, G.; Li, Y.; Lv, H.; Zhao, N.; Zhou, B.; Wang, W.; Cai, J.; Liu, S.; Luo, W.; Zhang, J.; Zhang, Y.; Lu, Y.; Fan, J.; Dan, H.; He, X.; Liu, L.; Feng, Y.; Chen, J.; Huang, W.; Sun, L.; Yan, Q.

2020-09-29 genetic and genomic medicine
10.1101/2020.09.28.20203455 medRxiv
Show abstract

With the rapid development of precision medicine industry, DNA sequencing becomes increasingly important as a research and diagnosis tool. For clinical applications, medical professionals require a platform which is fast, easy to use, and presents clear information relevant to definitive diagnosis. We have developed a single molecule desktop sequencing platform, GenoCare 1600. Fast library preparation (without amplification) and simple instrument operation make it friendlier for clinical use. Here we presented sequencing data of E. coli sample from GenoCare 1600 with consensus accuracy reaches 99.99%. We also demonstrated sequencing of microbial mixtures and COVID-19 samples from throat swabs. Our data show accurate quantitation of microbial, sensitive identification of SARS-CoV-2 virus and detection of variants confirmed by Sanger sequencing.

Matching journals

The top 5 journals account for 50% of the predicted probability mass.

1
Biosensors and Bioelectronics
57 papers in training set
Top 0.1%
23.3%
2
Scientific Reports
3612 papers in training set
Top 2%
13.2%
3
PLOS ONE
5266 papers in training set
Top 27%
5.7%
4
Informatics in Medicine Unlocked
22 papers in training set
Top 0.2%
5.1%
5
The Journal of Molecular Diagnostics
39 papers in training set
Top 0.1%
5.1%
50% of probability mass above
6
Briefings in Bioinformatics
354 papers in training set
Top 3%
3.4%
7
Journal of Bioinformatics and Systems Biology
15 papers in training set
Top 0.1%
3.4%
8
BMC Genomics
406 papers in training set
Top 3%
2.2%
9
Journal of Medical Virology
140 papers in training set
Top 1%
2.0%
10
F1000Research
88 papers in training set
Top 1%
1.8%
11
Frontiers in Genetics
230 papers in training set
Top 2%
1.8%
12
Computational and Structural Biotechnology Journal
242 papers in training set
Top 3%
1.8%
13
Heliyon
152 papers in training set
Top 4%
1.4%
14
Nature Communications
5641 papers in training set
Top 50%
1.2%
15
Genes
144 papers in training set
Top 2%
1.2%
16
GigaScience
212 papers in training set
Top 4%
1.1%
17
Frontiers in Microbiology
427 papers in training set
Top 7%
1.0%
18
Journal of Genetics and Genomics
38 papers in training set
Top 0.6%
1.0%
19
NAR Genomics and Bioinformatics
242 papers in training set
Top 4%
0.9%
20
Genomics
64 papers in training set
Top 2%
0.9%
21
Talanta
14 papers in training set
Top 0.3%
0.9%
22
International Journal of Molecular Sciences
494 papers in training set
Top 14%
0.9%
23
HardwareX
18 papers in training set
Top 0.2%
0.9%
24
The CRISPR Journal
39 papers in training set
Top 0.4%
0.6%
25
Nature Computational Science
55 papers in training set
Top 2%
0.6%
26
BMC Bioinformatics
457 papers in training set
Top 6%
0.6%
27
Journal of Clinical Microbiology
130 papers in training set
Top 1%
0.6%
28
The Innovation
13 papers in training set
Top 0.3%
0.6%
29
iScience
1154 papers in training set
Top 38%
0.6%
30
Diagnostic Microbiology and Infectious Disease
22 papers in training set
Top 0.3%
0.6%