Back

ACE2 polymorphisms and individual susceptibility to SARS-CoV-2 infection: insights from an in silico study

Calcagnile, M.; Forgez, P.; Iannelli, A.; Bucci, C.; Alifano, M.; Alifano, P.

2020-04-24 microbiology
10.1101/2020.04.23.057042 bioRxiv
Show abstract

The current SARS covid-19 epidemic spread appears to be influenced by ethnical, geographical and sex-related factors that may involve genetic susceptibility to diseases. Similar to SARS-CoV, SARS-CoV-2 exploits angiotensin-converting enzyme 2 (ACE2) as a receptor to invade cells, notably type II alveolar epithelial cells. Importantly, ACE2 gene is highly polymorphic. Here we have used in silico tools to analyze the possible impact of ACE2 single-nucleotide polymorphisms (SNPs) on the interaction with SARS-CoV-2 spike glycoprotein. We found that S19P (common in African people) and K26R (common in European people) were, among the most diffused SNPs worldwide, the only two SNPs that were able to potentially affect the interaction of ACE2 with SARS-CoV-2 spike. FireDock simulations demonstrated that while S19P may decrease, K26R might increase the ACE2 affinity for SARS-CoV-2 Spike. This finding suggests that the S19P may genetically protect, and K26R may predispose to more severe SARS-CoV-2 disease.

Matching journals

The top 5 journals account for 50% of the predicted probability mass.

1
Scientific Reports
3612 papers in training set
Top 0.9%
18.5%
2
Computational and Structural Biotechnology Journal
242 papers in training set
Top 0.1%
12.9%
3
Journal of Molecular Graphics and Modelling
17 papers in training set
Top 0.1%
9.8%
4
Communications Biology
993 papers in training set
Top 0.5%
7.9%
5
Journal of Chemical Information and Modeling
238 papers in training set
Top 1%
4.0%
50% of probability mass above
6
iScience
1154 papers in training set
Top 4%
4.0%
7
Nature Communications
5641 papers in training set
Top 34%
3.4%
8
Proteins: Structure, Function, and Bioinformatics
88 papers in training set
Top 0.3%
3.4%
9
Protein Science
246 papers in training set
Top 1%
3.2%
10
PLOS Computational Biology
1863 papers in training set
Top 11%
2.8%
11
International Journal of Molecular Sciences
494 papers in training set
Top 7%
1.9%
12
Physical Chemistry Chemical Physics
36 papers in training set
Top 0.4%
1.3%
13
Frontiers in Molecular Biosciences
102 papers in training set
Top 1%
1.3%
14
Journal of Molecular Biology
232 papers in training set
Top 3%
1.1%
15
Structure
193 papers in training set
Top 2%
1.1%
16
eLife
5828 papers in training set
Top 57%
1.1%
17
The Journal of Physical Chemistry Letters
63 papers in training set
Top 0.6%
1.0%
18
Journal of Proteome Research
234 papers in training set
Top 2%
1.0%
19
ACS Omega
105 papers in training set
Top 3%
1.0%
20
Heliyon
152 papers in training set
Top 8%
0.8%
21
Journal of Medical Virology
140 papers in training set
Top 3%
0.8%
22
Briefings in Bioinformatics
354 papers in training set
Top 7%
0.8%
23
Signal Transduction and Targeted Therapy
30 papers in training set
Top 0.7%
0.8%
24
Biochemical and Biophysical Research Communications
84 papers in training set
Top 3%
0.6%
25
Biochemistry
148 papers in training set
Top 3%
0.6%
26
Cell Reports
1498 papers in training set
Top 29%
0.6%