Plants
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Preprints posted in the last 30 days, ranked by how well they match Plants's content profile, based on 43 papers previously published here. The average preprint has a 0.06% match score for this journal, so anything above that is already an above-average fit.
Vottonen, L. L.; Chang, W.; Pöysä, M.; Lampi, A.-M.; Tanskanen, J.; Schulman, A. H.; Stoddard, F. L.
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Many Vicia species contain vicine and convicine (VC), which limit the use of faba bean and some vetches in food and feed. The first step in VC biosynthesis in V. faba is shared with the riboflavin pathway and attributed to VC1, a member of the ribAB family. Since riboflavin is ubiquitous to life, we examined the distribution of VC production in genus Vicia. Three accessions of each of 33 Vicia species were grown in glasshouse conditions to provide fresh seeds for VC analysis and leaves for DNA analysis. PCR was used to amplify fragments of the VC1/ribAB gene for sequencing, and these sequences were used to create a phylogenetic tree. COX1 and ITS2 sequences were used for examining the nucleotide diversity in the subgenera. VC and DNA sequences consistent with VC1 were found only in members of subgenus Vicia. In V. lathyroides, VC1 was present but no VC was detected. There was less sequence diversity in VC1/ribAB sequences of subgenus Cracca than in those of subgenus Vicia, suggesting that ribAB remained under stricter purifying selection than VC1. VC1 is confirmed as a prerequisite for the presence of VC, and the gene and its products are restricted to subgenus Vicia. HighlightThe favism-causing factors of vetches and faba bean, vicine and convicine, depend on the presence of the VC1 variant of the ribAB gene, which is found in only one subgenus.
Carrillo Briceno, J. D.; Reyes-Cespedes, A. E.; Jaimes, A.; Zabala Reyes, M.; Cadena, E. A.; Sanchez, R.; Carlini, A. A.; Zazzo, A.; Sanchez-Villagra, M. R.
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The study of historical documents from the original excavation led by J. M. Cruxent, of museum collections, as well as results of fieldwork, are combined to provide a revised assessment of the archeologically site of Cucuruchu, which together with those of Taima-Taima and Muaco, document megafaunal lithic remains associated from the Late Pleistocene in northern Venezuela. Six vertebrate taxa are reported for Cucuruchu: five megaherbivores (a giant sloth, Eremotherium laurillardi; a glyptodontid, Glyptotherium cf. G. cylindricum; a macrauchenid, cf. Xenorhinotherium bahiense; a proboscidean, Notiomastodon platensis; and an equid, Equus sp.), and a turtle (Kinosternon sp.). Two fragments of El Jobo projectiles were found in situ lying among megaherbivores bones, while another unidentified projectile fragment was also found in the same layer. Although no direct evidence of human exploitation on these megaherbivores remains has been found, the presence of El Jobo projectiles in the undisturbed fossil-bearing layer some of which are associated with fossil remains, could be a suggestive of such interaction. Two new radiocarbon dates indicate ages of at least ca. 15.3-16.0 kyr cal BP for the fossil-bearing layer, contrasting with the mid to late Holocene age originally reported. Cucuruchu is a window to the past and supports the presence of hunter-gatherers of the El Jobo culture in the region at the end of the Pleistocene.
Clerget, B.; Sidibe, M.; vom Brocke, K.; Raharinivo, V.; Ortiz, D.; Trouche, G.
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Crop photoperiodism models assume that flowering time is primarily controlled by daylength, yet many field observations contradict this view. We previously proposed an alternative framework integrating daily changes in sunrise and sunset times (dSR and dSS). Variety trials in Madagascar and in Argentina supported this concept: mid-late sorghum varieties from the northern hemisphere flowered late or very late when sown in November and December, consistent with the higher dSR/dSS values of the southern hemisphere summer. One Malian variety, sown monthly over six years in West Africa, exhibited high interannual variability in flowering time when sown between November and February. This revealed that up to four photoperiodic responses -- two quantitative and two qualitative, occurring at different times of the year -- may coexist within a single late photoperiod sensitive variety. All responses use only dSR and dSS cues. The qualitative responses are triggered by an internal phasic coincidence, which is set by a linear relationship between dSR and dSS at the onset of plant photoperiod sensitivity, and between dSR+dSS at panicle initiation. The research model fitted data from 28 varieties grown in Mali well. It also accurately fitted the duration to PI observed in three varieties sown at tropical and temperate latitudes. HighlightThe seasonal photoperiodic adaptation of flowering time in sorghum plants may rely on several signal transduction pathways regulated by sunrise and sunset times rather than day length.
Cheek, M.;Murdoch, H.
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Monocaul Ardisia (Primulaceae) have a single, vertical, woody stem and spiral phyllotaxy. They range from 30 cm to 100 cm tall. Three species of this architectural group, Ardisia mayumbensis, A. hallei and A. bracteata, have been recorded from Gabon hitherto. In this taxonomic revision we show that A. mayumbensis does not occur in Gabon, and we describe three new species. Two of these, Ardisia doudou sp. nov.and A. mica sp.nov., are endemic to Gabon and one, A. litterbin sp.nov, is found in both Gabon and Republic of the Congo. Ardisia hallei and A. bracteata are redescribed. All five species have a litter-gathering habit with a terminal funnel of leaves, and two of these species, Ardisia doudou and Ardisia litterbin, also possess adventitious roots in the distal part of the stem, a well-established strategy found in litter-gathering forest species of other plant families in tropical Africa. We provisionally assess the conservation status of all five taxa using the 2012 IUCN standard, finding that all monocaul Ardisia in Gabon fall within threatened categories. Two of the species, Ardisia bracteata and A. mica, are known from single collections and have not been seen for 164 and 63 years respectively and are conceivably extinct although further surveys are needed to establish this. We employ new characters in delineating and describing African Ardisia using leaf thickness and oil gland data.
Chahar, N.; Pokhriyal, E.; Yadav, S.; Ren, B.; Dangwal, M.; Das, S.
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Ovate Family Proteins (OFPs) are a class of plant-specific, negative nuclear transcriptional regulators characterized by conserved C-terminal OVATE domain. This study on comparative functional characterization of two head-to-head arranged OFPs - AtOFP2 (Ovate-OFP with full ovate domain) and AtOFP17 (Ovate-Like OFP with partial ovate domain) provides critical insight into how structural variations in ovate domain leads to functional divergence. Detailed phenotypic analysis of 28 physical and physiological traits of loss- and gain-of-function mutants revealed that both genes act as broad, pleotropic repressors of plant growth and development. Removal of repression in knock-down mutants of both genes exhibited reduced duration of seed dormancy, faster rate of germination and growth, bigger plants and significantly higher seed yield. In contrast, constitutive over-expression showed a generalized repressive nature of both genes, with nuanced differences for fine tuning of specific traits. For example, both genes showed antagonistic behaviours on root hair architecture. AtOFP2 act as a strong repressor of root hair development whereas AtOFP17 is a stronger repressor of hypocotyl and root cell architecture. AtOFP17 owing to partial ovate domain exerts a mild level of repression throughout life span as indicated by smaller plants and lesser yield in knock-down AtOFP17 mutants. On the contrary, AtOFP2 exerted a much stronger repressor effect in which > 90% over-expression mutants died at the juvenile stage ; the survival of remaining 10% is probably owing to activation of dosage-dependent feedback loop mechanism as indicated by normal growth of mature plants, and is also evident by transcriptome data. Transcriptome analysis of roots of 7-day old seedling of knock-down and over-expression mutants of AtOFP2 showed downregulation of OFP2 in over-expressed mutants. However, severely stunted phenotype indicated presence of stable OFP2 protein to exert effects. Analysis of DEGs in OFP2 mutants revealed that it acts as an important regulator working at intersection of hormonal signalling affecting critical genes required for auxin, cytokinin, GA, BR and ABA functioning. Perturbations across hormonal signalling pathways affects cell wall remodelling factors such as EXPANSINS, Xyloglucan hydrolases (XTHs) and cellulose synthases (CSLs) causing overall stunted growth; and epidermal patterning genes such as WER, GL1, EGL3, TTG1 leading to severely reduced root length and root hairs. Significantly, functional analysis of this master regulator highlighted a significant economic potential. Knockdown of both these genes relieves their natural repression on reproductive traits, leading to longer siliques, bigger and heavier seeds, and substantially increased overall seed yield, positioning AtOFP2 and AtOFP17 as highly valuable targets for agricultural crop improvement.
Pascual-Diaz, J. P.; Torres, M.; Bacovsky, V.; Horakova, L.; Kruzlicova, J.; Novotna, P.; Novoa, A.; Vitales, D.; Garcia, S.
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O_LIHybridisation is frequently associated with plant invasions; however, its consequences for genome organisation and chromosome evolution remain poorly understood in invasive species. We investigated the extent of hybridisation in the invasive Carpobrotus edulis--acinaciformis hybrid complex and determined the cytogenomic contribution of parental species in hybrid accessions. C_LIO_LIWe combined whole-genome sequencing, population genomic analyses, genome size estimation, repeatome characterisation, chromosome counting and fluorescence in situ hybridisation to compare parental species and hybrid accessions from South Africa and the Mediterranean Basin. C_LIO_LIPopulation genomic analyses revealed widespread hybridisation and introgression, with most invasive accessions showing admixed ancestries. Pattersons D-statistic supported asymmetric allele sharing towards C. edulis. Hybrid accessions displayed genome sizes indistinguishable from C. edulis, whereas C. acinaciformis possessed significantly larger genomes. Repeatome analyses identified marked differences in repetitive DNA composition, particularly in satellite DNA abundance and chromosomal distribution. A newly identified satellite repeat (CarpoSat) showed contrasting chromosomal patterns between parental species, whereas hybrids resembled C. edulis satellite pattern. C_LIO_LIOur results demonstrate that Carpobrotus hybrid accessions are a swarm of later-generation hybrids and backcrosses showing a strong bias towards C. edulis, indicating asymmetric introgression. These findings highlight the value of integrating cytogenetic and genomic approaches to understand genome evolution in invasive hybrid complexes. C_LI
Weirauch, S. K.; Gressmann, H.; Reichelt, M.; Kaltenegger, E.; Schnitzler, J. P.; Unsicker, S. B.
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Due to climate change, extreme weather events such as droughts are becoming more frequent and intense. This has a profound impact on plant performance and ecological interactions, including those involving herbivorous insects. The combined impact of drought stress and insect herbivory on plant metabolism has rarely been studied, particularly in woody plants. In this study, we investigated the influence of varying degrees of drought, both alone and in combination with herbivory by the leaf beetle Chrysomela tremulae, on the morphological and chemical characteristics of black poplar (Populus nigra) trees using a full factorial experimental design. We quantified morphological traits, volatile organic compound (VOC) emissions, phytohormone and amino acid concentrations, and phenolic profiles. Drought conditions increased the concentrations of salicylic acid (SA) and abscisic acid (ABA), while feeding induced ABA and SA. Amino acid profiles shifted significantly under drought conditions, particularly in beetle-infested plants. In contrast, salicinoids, which are the most important phenolic defense compounds in poplars, remained relatively stable. We also observed significant compound-specific effects on both constitutive and herbivore-induced VOC emissions. Our results demonstrate that drought and insect herbivory exert a joint influence on the chemical responses of P. nigra across multiple metabolic pathways. These findings highlight how the interaction between abiotic and biotic stresses can influence the defense chemistry of trees, which will consequently affect ecological interactions in forest ecosystems in the face of climate change.
Nunez Florentin, M.; Claypool, K.; Huda, N.; Green, K.; Monzel, G.; Schafran, P. W.; Neupane, S.
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The tribe Spermacoceae (Rubiaceae) comprises a morphologically diverse assemblage of approximately 1,400 species distributed across the Neotropics, Africa, Asia, Australia, and Pacific region. It remains one of the most taxonomically intractable groups in the family, with generic limits repeatedly redefined for more than two centuries. Previous phylogenetic studies based on a limited number of plastid and nuclear markers left numerous relationships unresolved and provided sparse representation of Neotropical lineages. Here, we present the first phylogenomic study of the tribe based on plastome-scale data and expanded sampling of Neotropical taxa. We sampled 121 species representing 55 genera spanning all major clades and generated 123 new plastomes, including 25 species incorporated into a molecular phylogenetic framework for the first time. Maximum-likelihood and Bayesian analyses recovered a highly resolved and strongly supported phylogeny, with uncertainty restricted to a small number of deep backbone nodes. Pollen and seed micromorphology provided additional evidence for evaluating phylogenetic relationships. The resulting phylogenetic framework clarifies generic boundaries across several problematic lineages and supports multiple taxonomic changes. Pervasive homoplasy in seed and floral characters rendered several traditionally recognized genera non-monophyletic, warranting new combinations, including Edrastima oxycoccoides, Stenotis alexanderae, and S. prostrata, and a reassessment of taxa such as Terrellianthus serpyllaceus and Oldenlandia dusenii. We further identify genera requiring additional study and provide an updated key to the 82 recognized genera of Spermacoceae. Together, these results provide the most robust phylogenetic framework yet available for the tribe and establish a foundation for future systematic, biogeographic, and evolutionary research.
Essahibi, A.;Falquet, L.;Esseiva, A.;Qaddoury, A.;Mateus, I.;Reinhardt, D.
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The xerophyte argan (Sideroxylon spinosum) has great ecological and socioeconomic importance for Morocco. However, it is endangered due to climate change and human overexploitation. We assess drought resistance traits of argan and test the potential of arbuscular mycorrhizal (AM) symbiosis to promote its growth and mitigate the consequences of drought. We compare ten endemic Moroccan mycorrhizal inocula with the model AM fungus Rhizophagus irregularis and with the drought-adapted isolate Diversispora omaniana. We integrated physiological phenotyping and RNA sequencing to investigate the stress resistance mechanisms of argan against drought. We show that AM symbiosis significantly mitigates drought effects on plant growth, mainly by improving water relations and photosynthetic efficiency, resulting in increased growth rates. Taken together, physiological and transcriptomic analyses show that stress markers were moderatly induced during severe drought stress irrespective of mycorrhizal status, suggesting that argan adopts a drought-coping strategy that involves both, stress avoidance and stress tolerance. Argan is highly AM-responsive, both at the phenotypic and transcriptomic level, suggesting that AM has great potential to promote argan growth under drought stress.
Afonso, H. R.; Macedo, M.; Azevedo, H.; Vila-Vicosa, C.; Costa, M. M. R.
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Background and AimsThe development of unisexual flowers relies on the tight coordination of flower organ identity and sex determination. The genus Quercus is typically considered strictly monoecious, bearing fully segregated male and female flowers within the same individual tree. However, several reports of atypical flowering across the genus challenge this canonical view, suggesting that flowering in oaks may be more flexible than traditionally assumed. In this work, the dynamics of flower development in Quercus orocantabrica were examined to correlate contrasting floral morphologies with divergent molecular profiles. MethodsThe flowering phenology of Q. orocantabrica trees was closely monitored over several individuals and years, together with a detailed floral morphological analysis of male, female and atypical flowers. Key floral homeotic gene homologues were identified, and their expression assayed in the development of different flowers. Key ResultsRecurrent and widespread hermaphroditic flowering was detected in several Q. orocantabrica trees, frequently associated with unseasonal flowering events. Gene expression analysis of male, female and hermaphroditic flowers revealed a sex-biased expression of Q. orocantabrica B- and C-class genes, with the B-class gene QoPI in particular being tightly associated with the presence of fully-developed stamens. In addition, the expression of the C-class gene QoSHP contrasted with reports in other Fagaceae, highlighting a potential functional divergence of the C/D-class lineage within the family. ConclusionsThe results here depicted indicate that the dynamics of floral sex identity in oaks are more plastic than traditionally assumed, supporting a reinterpretation of oak reproductive biology based on a versatile and resilient framework responsive to different developmental contexts.
Dulamsuren, C.; Abbas, J. T.; Csapek, G.; Naranbayar, E.; Uitumen, T.; Amarjargal, D.; Byamba-Yondon, G.; Saindovdon, D.; Munkhzul, T.; Batsaikhan, G.; Hauck, M.
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Direct heat damage has been considered secondary as a cause of climate change-induced tree mortality and productivity declines in forests compared with climate change effects on tree water relations. However, evidence from temperate and tropical forests is accumulating that direct heat damage in the photosystem II (PS II) that is independent of water relations is also a realistic scenario under climate change. We analyzed PS II heat tolerance in Larix sibirica, which represents a dominant boreal tree species in Siberia and northern Central Asia in cold environments with subzero or near-zero mean annual temperatures, but nevertheless warm summers. Thermal imaging was applied to relate heat thresholds found in the laboratory to canopy temperatures in forests on north-facing mountain slopes, which are the main habitat of L. sibirica. L. sibirica showed slight decreases of the maximum quantum yield of PS II (Fv/Fm) at 35{degrees}C and 40{degrees}C after up to 4 h, but strong reductions at [≥]45{degrees}C and minor increases in Fv/Fm in late summer, which could be interpretation as heat acclimation. Canopy temperatures in the study year did not reach the thresholds for serious PS II heat damage. However, L. sibirica was more strongly sensitive to heat than temperate conifers. This first combined study of heat tolerance and canopy temperatures from boreal forests points to the possibility of low heat tolerance of boreal tree species, but such conclusion would require the study of more tree species.
Draga, S.; Siena, L. A.; Colono, C.; Gabelli, G.; Podio, M.; Vega, M. S.; Palumbo, F.; Ortiz, J. P. A.; Barcaccia, G.; Pessino, S. C.
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Background and AimsPaspalum notatum reproduces through either sexuality or apomixis, two pathways that may coexist within the same individual and are regulated by interconnected molecular networks responsive to environmental cues. Here, we characterized the transcript structure and expression of BUD SITE SELECTION PROTEIN 13 (BUD13), a component of the RES spliceosomal complex previously reported as differentially expressed in florets of sexual and apomictic plants, as a first step toward testing its involvement in the molecular regulation of the apomixis-sexuality switch. MethodsPreviously generated floral and leaf transcriptomes from sexual and apomictic Paspalum notatum plants, including Oxford Nanopore long-read data, were mined to characterize BUD13 transcript structure and expression. Phylogenetic analyses and in silico mapping were conducted to infer evolutionary relationships and determine the origin of the transcripts. Differential expression was validated by RT-qPCR, while in situ hybridization was used to reveal cell-specific ovule expression patterns. Key resultsBUD13 is expressed in Paspalum notatum florets as a truncated isoform (SHORT) encoding a small protein lacking part of the herpes simplex virus regulatory protein (ICP4) domain. Two SHORT transcripts, SHORT1 and SHORT2, with different 5' untranslated region (UTR) regions, were identified in flowers. SHORT1 was consistently upregulated in apomictic ovules from premeiosis to anthesis. Both transcripts originated from a single genomic locus located in the subtelomeric region of the short arm of chromosome 6. SHORT isoforms with variable structures were detected in other monocots. In situ hybridization showed that, whereas BUD13 was expressed throughout sexual ovules, expression was absent from the female germline of apomictic ovules. A consistent expression was observed in somatic proembryos of aposporous embryo sacs. ConclusionsOur findings reveal structural, spatial and temporal divergence in BUD13 expression between sexual and apomictic reproductive programs, providing new insights into the molecular regulation of asexual seed formation.
Amegan, K. E.; Magot, F.; Desneux, N.; Del-Valle, S.; Salgon, S.; Kergunteuil, A.; Caromel, B.; Larbat, R.; Lavoir, A.-V.
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AbstractTomato production faces a persistent challenge from the tomato leaf miner, Phthorimaea absoluta, a pest that severely limits yields while effective resistance in cultivated varieties remains scarce. To address this gap, wild tomato relatives represent a promising reservoir of resistance traits. In this study, 24 tomato accessions, including both cultivated types and wild species, were evaluated under greenhouse (no-choice) and tunnel (choice) conditions. Resistance mechanisms were characterized through measures of antibiosis such as leaflet lesion type, proportion of attacked leaflets, and mine density. The results revealed substantial variation between and within species, allowing classification of accessions into resistant, intermediate, and susceptible groups through multivariate analysis. Notably, the wild accession Solanum habrochaites PI248707 exhibited strong resistance, in contrast to susceptible cultivated varieties such as Rose de Berne. Under choice conditions, PI248707 sustained limited damage and disrupted larval development, with early instar larvae present but few reaching advanced stages, indicating an inhibitory defense response. Untargeted metabolomic profiling further highlighted pronounced constitutive differences between wild and cultivated accessions, with S. pennellii and S. habrochaites displaying higher metabolic diversity. By integrating phenotypic and metabolic data, specific metabolite classes associated with resistance were identified. These findings underscore the potential of wild tomato germplasm in breeding programs, with PI248707 standing out as a strong candidate for resistance introgression.
Alves, T. C.; de Gasper, A. L.
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Premise: Rapid and accurate plant species identification is a critical challenge exacerbated by the taxonomic impediment. Although portable near-infrared (Micro NIR) spectroscopy represents a promising solution, the current absence of standardized protocols and a fundamental understanding of how critical acquisition and analysis parameters influence accuracy remain significant barriers. This study focused on the systematic optimization and validation of a comprehensive workflow designed to maximize the reliability of plant identification using this technology. To ensure methodological robustness across diverse foliar matrices, four vascular plant species were strategically selected as a representative test set to encompass morphological extremes, including significant variations in leaf thickness, pubescence, and surface texture. Methods: Using a portable spectrometer on herbarium specimens (exsiccate) of four vascular plant species, we systematically tested five spectral backgrounds, seven pre-processing methods, and four classification models. Subsequently, we optimized the number of spectral readings and evaluated the influence of the leaf scanning surface (adaxial vs. abaxial) on model accuracy. Results: The highest-performing combination was a Shiny Aluminum background, Second Derivative pre-processing, and a Random Forest model, which achieved a mean cross-validated accuracy of 99%. An average of just three spectral readings from the adaxial (upper) leaf face was sufficient to saturate model performance, proving statistically superior to other approaches (p < 0.001). Discussion: This study establishes a validated, high-accuracy protocol for plant species identification from herbarium specimens using portable NIR, offering a powerful tool for biodiversity studies. Direct applicability to fresh plants in the field requires future validation to account for the spectral influence of moisture variability.
Rodrigues, L. C. D.; Pimenta, J. A.; Arcanjo, F.; Cavalheiro, A. L.; de Oliveira, H. C.; Torezan, J. M.
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Global climate change has increased the frequency and intensity of drought events, making it urgent to understand how native species respond to water deficit (WD). In biodiverse environments such as tropical forests, simple methods are needed to study multiple species simultaneously. This can help predict how natural environments will respond to climate change and guide the strategic selection of drought-resistant species for reforestation. This study aimed to: (1) adapt an existing simple and inexpensive method to apply a controlled WD on tree seedlings from tropical species commonly produced in nurseries for restoration projects, suitable for greenhouse experiments; and (2) evaluate the effectiveness of this method in generating ecophysiological responses to WD that allow the estimation of species' drought resistance. Ten native tree species from the Semideciduous Seasonal Forest (SSF), a phytophysiognomy of the Atlantic Forest, were selected. An existing method was adapted to implement capillary irrigation, in which the bases of the seedling tubes were placed in floral foam blocks positioned inside 15 L plastic containers filled with water. A gradual and severe WD was applied to five seedlings of each species by removing all water from the containers, leaving only the water retained in the saturated floral foam available for plant uptake. The remaining seedlings were maintained well-watered (containers full and foam saturated) as the control group. Stomatal conductance (gs) was measured daily for all seedlings until they reached 50% or less of their initial gs (igs); at this point, stem water potential ({Psi}w) was measured. Both gs and {Psi}w differed significantly among treatments and species (p < 0.01). Ficus guaranitica and Heliocarpus popayanensis were the only species that did not show significant {Psi}w differences between treatments, indicating higher drought resistance. In contrast, Campomanesia xanthocarpa and Eugenia uniflora had the lowest {Psi}w values under WD, suggesting lower drought resistance. The remaining species were distributed along a gradient of responses to WD. Additionally, no correlation was found between {Psi}w and gs at 50% igs in the WD group (rho = 0.16, p = 0.26). The method proved effective in inducing controlled WD and generating measurable ecophysiological responses, offering a useful tool for screening native species for drought resistance.
Tang, T.; Guerra, T.; Coq--Etchegaray, D.; Schmid, B.; Reichert, L.; Wiesenberg, G. L. B.; Schuman, M. C.; Moorsel, S. v.
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O_LIEuropean beech (Fagus sylvatica L.) is a widely distributed, ecologically and economically important deciduous tree species in European forests, but is increasingly threatened by drought stress. Volatile organic compounds (VOCs) are ubiquitous plant metabolites that may serve as non-invasive biomarkers of drought stress, yet they have rarely been studied in European beech. C_LIO_LIIn this study, we examined VOC responses of European beech to experimental drought across diverse genetic backgrounds in a common garden. The 72 four-year-old beech saplings represented three genetic clusters, seven provenances (geographic seed sources), and 12 maternal seed families. Half of the saplings were assigned to the drought treatment and received no water for 14 days, while the remaining saplings served as controls and were watered as required. VOC profiles, quantified as peak heights of mass spectral features, were measured for all individuals during pre-drought, drought, and rewatering periods. C_LIO_LIWe found that pre-drought VOC profiles, in particular monoterpenes, varied significantly among genetic backgrounds. Experimental drought significantly altered VOC profiles, characterized by increased green leaf volatiles and decreased monoterpenes, oxidized terpenoid derivatives, and other fatty acid derivatives. Reductions in monoterpenes persisted after rewatering, indicating a drought legacy effect. Drought responses were largely conserved across genetic backgrounds, with significant seed family-specific responses detected for only three VOC features. C_LIO_LIOur findings suggest that VOC profiles are genetically structured yet highly plastic under drought and highlight their potential as non-invasive biomarkers for monitoring drought stress in European beech under climate change. C_LI
Rilwan, O.; Ibrahim, A.
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Tomato (Solanum lycopersicum L.) is one of the most important vegetable crops in Nigeria, serving as a major source of income, nutrition, and raw material for food industries. However, its production is severely constrained by Fusarium wilt, a destructive soil-borne disease caused by Fusarium oxysporum f. sp. lycopersici. This study investigated the prevalence and severity of Fusarium wilt on tomato in Chikun Local Government Area (LGA) of Kaduna State, Nigeria. Field survey and laboratory analyses were conducted on forty-five tomato samples from three tomato farms Kujama, Kakau, and Rido. The samples were examined for disease incidence and severity. Data were analyzed using descriptive statistics and Chi-square tests. The overall disease incidence was with Rido recording the highest infection rate (80.0%), followed by Kujama (60.0%) and Kakau (40.0%). Among plant parts, the stem exhibited the highest infection frequency (80.0%), while leaves and fruits had 60.0% and 40.0% incidence respectively. Chi-square analysis indicated no significant difference (p > 0.05) in disease incidence among farms and plant parts, suggesting uniform pathogen distribution. The research recommends the adoption of integrated disease management strategies and improved farmer awareness to mitigate the impact of the disease and ensure sustainable tomato production.
Loupit, G.; Sancharme, M.; Petriacq, P.; Valls Fonayet, J.; Bittebiere, A.-K.
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Transgenerational plasticity can shape plant phenotype and influence plant response to environmental changes in interaction with the current conditions. While how past stress interact with either current optimal or stress conditions is increasingly documented within a single plant, transgenerational plasticity remains particularly poorly understood especially at the metabolome level. In our study, we investigated whether heat stress induces transgenerational metabolic and phenotypic modifications along two successive clonal ramet generations of the sub-Antarctic aquatic plant Limosella australis. We performed untargeted metabolomic approaches and measured morphologic and performance traits, to assess both transgenerational plasticity of the metabolome and the phenotype. We found that heat stress remodelled the metabolic profile and influenced the foraging strategy of our clonal plant, and that some of these metabolic changes persisted into the first clonal generation. This one therefore adopted an intermediate growth strategy, even though culture conditions were optimal. By comparing differentially accumulated features between daughter ramets from heat stressed mother ramets and from unstressed mother ramets, we identified common and specific metabolites accumulation to heat stress response, belonging to diverse compound families. However, we did not observe any adaptative advantage and any metabolic imprint during another heat stress applied on the second clonal generation. This work provides especially new clues into how plant metabolome integrates and transfers previous stressed clonal generation's information.
Tajima, A. M.; Matthews, W. C.; Duong, T.; Khanh, T. D.; Baniya, A.; Penmetsa, R. V.; Parker, T.; Farmer, A.; English, S.; Diepenbrock, C.; Gepts, P.; Roberts, P. A.; Huynh, B.-L.
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Lima bean (Phaseolus lunatus) is a broadly adapted, economically important leguminous crop and a susceptible host of root-knot nematodes (Meloidogyne spp.; RKN), which are a devastating plant pathogen in agricultural systems worldwide. To date, there have been few studies to elucidate the genetic determinants of RKN resistance in lima beans. Understanding the genetic mechanisms underlying resistance is essential for improving resistance traits and incorporating them into lima bean breeding programs. To assist in marker-assisted selection, we aimed to identify and map quantitative trait loci (QTLs) conferring RKN resistance-related traits. Three recombinant inbred line (RIL) populations were used in this study. Three populations were derived by crossing two RKN-resistant parents with the same RKN-susceptible parent and with each other. All populations were genotyped using genome-wide single-nucleotide polymorphism (SNP) markers. Each population was screened for root galling (RG) and RKN egg reproduction (ER) in response to M. incognita and M. javanica in greenhouse experiments. Three major QTLs were detected and mapped on chromosome Pl04 (QRk-pl04.1), Pl05 (QRk-pl05.1) and Pl10 (QRk-pl10.1) across populations. Among them, QRk-pl05.1 and QRk-pl10.1 affected levels of RG and ER of both RKN species, while QRk-pl04.1 suppressed root galling and reproduction responses of M. incognita but not of M. javanica. These chromosomal regions defined by flanking markers will help guide marker-assisted breeding and gene discovery for broad-based RKN resistance in lima beans.
Chandler, K.;Baker, H.;McCotter, S.;Schulz, L.;Popova, I.;Ibrahim, H.;Dandurand, L.;Zasada, I.;Gleason, C.
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Plant-parasitic nematodes (PPNs) are among the most destructive agricultural pests worldwide, causing significant economic losses across diverse cropping systems. Soil fumigation, the most common management strategy, is costly, detrimental to soil health, and increasingly restricted due to environmental and regulatory concerns. As a result, there is a critical need for alternative, sustainable approaches for PPN control. Solanum sisymbriifolium is resistant to several Meloidogyne species and represents a promising source of natural nematicidal compounds. In this study, we evaluated the effects of S. sisymbriifolium extracts on Meloidogyne chitwoodi and M. hapla, two economically important nematodes. Compounds were extracted using solvents of increasing polarity and then reconstituted in water. The water-solubilized extracts were then used in bioassays to assess their effects on nematode egg hatching, egg viability, and second-stage juvenile (J2) survival. Egg hatching and J2 viability of both Meloidogyne species were consistently affected by compounds in the 1-butanol fraction. Further characterization of these compounds may enable the development of novel, environmentally sustainable alternatives to conventional nematode management strategies.