Machine Learning Approach to Identify Gut Microbiota Biomarkers in Patients with ST-Elevation Myocardial Infarction Presenting Primary Ventricular Tachyarrhythmias
Tseng, H.-P.; Lai, Z.-L.; Hsu, Y.-Y.; Hung, Y.-H.; Cho, D.-Y.; Hsueh, P.-R.; Chung, W.-H.; Wu, M.-Y.; Lin, Y.-N.; Chen, K.-W.; Chang, S.-S.; Chang, K.-C.
Show abstract
Background Risk stratification for primary ventricular tachycardia/ventricular fibrillation (VT/VF) in patients with ST-elevation myocardial infarction (STEMI) remains limited. We aimed to identify gut microbiome biomarkers and microbial metabolic pathways associated with primary VT/VF in STEMI using machine learning (ML). Methods Stool samples from 33 STEMI patients (7 with primary VT/VF and 26 without VT/VF) underwent full-length 16S rRNA sequencing during the acute ([≤]7 days) and recovery (30?60 days) phases. An ML pipeline integrating taxonomic features identified reproducible features associated with primary VT/VF. Core biomarkers were defined as taxa demonstrating both univariate significance (false discovery rate [FDR] <0.05) and multivariate classification importance. Functional pathways and enzymes were predicted using PICRUSt2. Results Five acute-phase taxa were reproducibly associated with primary VT/VF: Clostridium aldenense, Enterocloster bolteae, bacterium NLAE-zl-G101, Alistipes shahii, and Roseburia sp. (all FDR <0.05). A reduced-feature support vector machine model achieved an area under the receiver operating characteristic curve of 0.846 (95% confidence interval, 0.676?0.984), with 85.7% sensitivity and 76.9% specificity. Differential abundance analysis showed enrichment of Bacteroides fragilis, Bacteroides thetaiotaomicron, and E. bolteae. Functional analysis demonstrated enrichment of fucose degradation and purine catabolism, with increased predicted abundances of L-fucose mutarotase and xanthine dehydrogenase. Conclusions Primary VT/VF in STEMI was associated with a distinct gut microbiome-metabolic signature characterized by Lachnoclostridium-related taxa, persistent Bacteroides enrichment, and enhanced predicted fucose and purine metabolism. These exploratory findings warrant validation in larger independent cohorts and mechanistic studies.
Matching journals
The top 8 journals account for 50% of the predicted probability mass.
Similar papers in this journal
Similar papers in this journal
- Metabolomic profile for understanding heart failure classifications 92%
- Cerebral Small Vessel Disease Burden is Associated with Decreased Abundance of Gut Barnesiella intestinihominis Bacterium in the Framingham Heart Study 91%
- Application of physiological network mapping in the prediction of survival in critically ill patients with acute liver failure 90%
Similar papers in this journal
- Distinct patterns of microbiota and its function in end-stage liver cirrhosis correlate with antibiotic treatment, intestinal barrier impairment and systemic inflammation 91%
- Integrating Gut Microbiota and Host Immune Markers for Highly Accurate Diagnosis of Clostridioides difficile Infection 91%
- Species- and strain-level assessment using rrn long-amplicons suggests donor's influence on gut microbial transference via fecal transplants in metabolic syndrome subjects 91%
Similar papers in this journal
- Myocardial performance improvement after iron replacement in heart failure patients: The IRON-PATH II echo-substudy 89%
- Heart Rate, Electrocardiographic Subclinical Myocardial Injury, and Long-Term Mortality 89%
- Validation of SeptiCyte RAPID to discriminate sepsis from non-infectious systemic inflammation 89%
"Similar papers" are the closest papers from that journal in the model's embedding space. They show what the match is built on, but the ranking comes mostly from a classifier over the whole training set, not from these examples alone.