Undergraduate Biophysical Chemistry Series: Teaching through a Combination of a Purpose-built Textbook, Research-derived Biomolecular Samples and Computer Labs
Smirnov, S. L.; Vugmeyster, L.; Stephenson, N.; McCarty, J.
Show abstract
Biophysics is a rapidly advancing field with an incredible breadth of topics. Thus, undergraduate biophysics instructors have to strategize and decide what topics they will cover in their courses. Educational institutions utilize a variety of biophysics textbooks. A common deficiency of each of the existing texts is that it serves well a given set of topics (theory, illustrations, practice problems) and leaves out other areas. A typical example includes good theory and problems for thermodynamics and kinetics while presenting molecular dynamics and various spectroscopic methods in a lacking or outdated way. The authors of this manuscript teach a capstone Biophysical Chemistry three-quarter series (Western Washington University/WWU, Bellingham, WA) which ideally should resonate with the general and major-specific courses the students take within their major at WWU. To achieve this goal and to enrich the traditional lecture-based delivery, the instructors have developed and brought together key pedagogical elements: purpose-built online textbook with a uniform structure of the academic content and practice problems, a study sample (oligopeptide) of biophysical significance with a growing set of experimental and computational data and student-centric in-class activities including computer labs. Our Biophysical series emphasizes concepts and methods of computational structural biology (Molecular Dynamics) and spectroscopic approaches (IR, UV and NMR). Here we describe the details of our integrative approach, summarize key outcomes and chart ways to advance the biophysical chemistry series further. Our textbook can be found through LibreText.
Matching journals
The top 5 journals account for 50% of the predicted probability mass.
Similar papers in this journal
- Altering the solubility of the antibiotic candidate Nisin - a computational study 91%
- Impact of Thiol-Disulfide Balance on the Binding of Covid-19 Spike Protein with Angiotensin Converting Enzyme 2 Receptor 90%
- Unveiling the three-step model for the interaction of imidazolium-based ionic liquids on albumin 89%
Similar papers in this journal
- Comment on 'Valid molecular dynamics simulations of human hemoglobin require a surprisingly large box size' 90%
- Comment on ‘Response to comment on ‘Valid molecular dynamics simulations of human hemoglobin require a surprisingly large box size’’ 90%
- Inhibition of mutant RAS-RAF interaction by mimicking structural and dynamic properties of phosphorylated RAS 89%
Similar papers in this journal
- Assessment of Software Methods for Estimating Protein-Protein Relative Binding Affinities 90%
- Ligand-induced Conformational Selection Predicts the Selectivity of Cysteine Protease Inhibitors 90%
- Drug Delivery Process Simulation - Quantifying the Conformation Dynamics of Paclitaxel and Cremophor EL 90%
Similar papers in this journal
- Computational Modeling of Stapled Coiled-Coil Inhibitors Against Bcr-Abl: Toward a Treatment Strategy for CML 91%
- Temperature and Guanidine Hydrochloride effects on the folding thermodynamics of WW domain and variants 91%
- Uncovering Differences in Hydration Free Energies and Structures for Model Compound Mimics of Charged Sidechains of Amino Acids 90%
Similar papers in this journal
"Similar papers" are the closest papers from that journal in the model's embedding space. They show what the match is built on, but the ranking comes mostly from a classifier over the whole training set, not from these examples alone.