Chemical Rescue Serves as a Predictive Proxy for Glycosynthase Activity on Glycosidic Bonds via a Shared Glycosyl Oxocarbenium Transition State
Kumar, M.; Bandi, C. K.; Tallavajhula, S. V. V.; Burgin, T. E.; Chakravartula, S. V. S.; Chundawat, S. P. S.
Show abstract
Engineered glycosynthases (GSs) are powerful biocatalysts for custom glycan synthesis, yet their optimization via directed evolution is severely constrained by bottlenecks in high-throughput screening for activated azido-sugar donors. Here, we demonstrate that chemical rescue (CR)--the azide-mediated restoration of hydrolytic activity in nucleophile-deficient mutants--serves as a predictive, high-throughput proxy for glycosynthase activity. Applying an azide-responsive Escherichia coli biosensor screen to a site-saturation mutagenesis library of Thermotoga maritima -L-fucosidase (TmAfc), we established a strong rank-order correlation between CR and GS activities in both crude lysates ({rho} = 0.73) and purified enzymes ({rho} = 0.95). Transition path sampling and QM/MM umbrella sampling revealed that both pathways proceed through a shared oxocarbenium-ion-like transition state ({Delta}G{ddagger} {approx} 8.7 kcal/mol), providing a structural and thermodynamic rationale for using CR to select for transition-state-stabilizing mutations. Biochemical characterization of top-performing variants yielded an engineered fucosynthase (TmAfc_D224G_N70D_T392S) exhibiting a nearly 100-fold enhancement in Vmax alongside altered regioselectivity. This two-tiered screening framework leverages cost-effective chemical rescue assays to streamline glycosynthase engineering for tailored glycans synthesis.
Matching journals
The top 3 journals account for 50% of the predicted probability mass.
Similar papers in this journal
- Designed high-redox potential laccases exhibit high functional diversity 96%
- Expanding the chemical space of synthetic cyclic peptides using a promiscuous macrocyclase from prenylagaramide biosynthesis 95%
- Mechanistic and structural insights into a divergent PLP-dependent L-enduracididine cyclase from a toxic cyanobacterium 94%
Similar papers in this journal
- Bioluminescent detection of viral surface proteins using branched multivalent protein switches 93%
- The SpyBLI cell-free pipeline for the rapid quantification of binding kinetics from crude samples 92%
- The multivalent G-quadruplex (G4)-ligands MultiTASQs allow for versatile click chemistry-based investigations 92%
Similar papers in this journal
- A robust platform streamlining aromatic noncanonical amino acid biosynthesis and genetic code expansion in E. coli 95%
- Unraveling the Molecular mechanism of Polysaccharide Lyases for Efficient Alginate Degradation 95%
- Unleashing the Potential of Noncanonical Amino Acid Biosynthesis for Creation of Cells with Site-Specific Tyrosine Sulfation 95%
"Similar papers" are the closest papers from that journal in the model's embedding space. They show what the match is built on, but the ranking comes mostly from a classifier over the whole training set, not from these examples alone.