Back

AI as a signal assessor - Can a Large Language Model perform causality assessment on a case series?

Shenoy, A.; Zekarias, A.; Viklund, A.; Mitchell, J.; Barrett, J.; Sandberg, L.; Meldau, E.-L.; Taavola-Gustafsson, H.

2026-06-29 pharmacology and therapeutics
10.64898/2026.06.26.26356656 medRxiv
Show abstract

Background Large Language Models (LLMs) are increasingly explored for pharmacovigilance tasks, including information extraction, case documentation, and single-case causality assessment. However, their ability to support causality assessment at the case series level -- a complex, time-intensive task requiring clinical reasoning across multiple reports -- remains unexplored. Objective To investigate how a large-scale general-purpose LLM can support pharmacovigilance professionals in assessing causality in a case series, and to explore how prompt design influences the quality of the model's reasoning. Methods GPT-4o was used to assess causality for five drug - adverse event combinations, using an adaptation of the Bradford Hill viewpoints for case series assessment. The combinations represented varying drugs and vaccines, adverse events, and case series sizes (5-402 reports). One combination served as a negative control. Structured prompts were iteratively developed and refined using one combination, then applied to all combinations. LLM-generated assessments for each viewpoint were qualitatively evaluated by human annotators for accuracy (precision), and the LLM's coverage of key aspects from the original signal text was assessed for one combination (recall). Results Across all five combinations, annotators agreed with 79-92% of the LLM's output sentences. Full disagreement was consistently low (3-7%), with errors typically involving misinterpretation of complex report details rather than outright fabrication. Prompt design substantially influenced output quality; providing Bradford Hill viewpoint descriptions, including case series data, and adding explicit anti-hallucination instructions improved specificity and grounding. For the recall assessment, 15 of 23 key segments from the original signal text were reflected in the LLM output. The overall summary assessments demonstrated balanced reasoning, correctly distinguishing between positive safety signals and the negative control, and provided a coherent synthesis suitable as a starting point for human assessors. Conclusions LLMs have the potential to generate contextually nuanced and largely accurate preliminary causality assessments of case series aligned with the Bradford Hill viewpoints, with a low but non-zero hallucination rate. These findings support LLMs as a tool to augment, not replace, expert judgment in signal assessment. Future work should address larger and more diverse signal sets, improved evaluation frameworks for generative output, and the integration of pre-computed summary statistics to reduce errors.

Matching journals

The top 7 journals account for 50% of the predicted probability mass.

1
npj Digital Medicine
118 papers in training set
Top 0.5%
11.8%
2
BioData Mining
22 papers in training set
Top 0.1%
10.9%
3
Computational and Structural Biotechnology Journal
242 papers in training set
Top 0.3%
6.7%
4
PLOS ONE
5266 papers in training set
Top 28%
5.5%
5
Journal of Biomedical Informatics
47 papers in training set
Top 0.3%
5.5%
6
Pharmacoepidemiology and Drug Safety
18 papers in training set
Top 0.1%
5.1%
7
Journal of Medical Internet Research
87 papers in training set
Top 0.5%
4.8%
50% of probability mass above
8
Drug Safety
10 papers in training set
Top 0.1%
4.8%
9
Frontiers in Pharmacology
111 papers in training set
Top 0.6%
4.0%
10
Clinical Pharmacology & Therapeutics
25 papers in training set
Top 0.1%
4.0%
11
Systematic Reviews
15 papers in training set
Top 0.1%
3.1%
12
Journal of the American Medical Informatics Association
71 papers in training set
Top 1%
2.4%
13
Schizophrenia
21 papers in training set
Top 0.2%
2.1%
14
Clinical and Translational Science
22 papers in training set
Top 0.2%
2.1%
15
PLOS Digital Health
106 papers in training set
Top 3%
1.7%
16
JAMIA Open
42 papers in training set
Top 1.0%
1.5%
17
Scientific Reports
3612 papers in training set
Top 60%
1.4%
18
Value in Health
11 papers in training set
Top 0.2%
1.3%
19
Frontiers in Medicine
120 papers in training set
Top 3%
1.1%
20
BJGP Open
13 papers in training set
Top 0.4%
1.1%
21
Epilepsia
56 papers in training set
Top 0.6%
0.9%
22
JMIR Medical Informatics
18 papers in training set
Top 0.8%
0.9%
23
British Journal of Clinical Pharmacology
21 papers in training set
Top 0.5%
0.8%
24
JMIRx Med
32 papers in training set
Top 2%
0.8%
25
BMC Medical Research Methodology
47 papers in training set
Top 1%
0.8%
26
eLife
5828 papers in training set
Top 65%
0.8%
27
Communications Medicine
113 papers in training set
Top 5%
0.8%
28
Clinical Trials
11 papers in training set
Top 0.5%
0.6%
29
eBioMedicine
183 papers in training set
Top 8%
0.6%
30
npj Systems Biology and Applications
125 papers in training set
Top 2%
0.6%