Back

Context-dependent siderophore exploitability shapes microbial community structure

Krueger, A.; Paik, S.-H.; Bund, M.; Pesch, M.; Krueger, S.; Lueckel, B.; Papadopoulos, A.; Hassan, T.; Wiechert, J.; Weber, U.; Avellan, R.; Smits, S.; Bott, M.; Kovacs, A. T.; Westhoff, P.; Matuszynska, A. B.; Kohlheyer, D.; Drepper, T.; Frunzke, J.

2026-05-29 microbiology
10.64898/2026.05.27.728356 bioRxiv
Show abstract

1)Siderophores are classically viewed as shared iron-scavenging public goods, yet their ecological roles in multispecies communities remain poorly defined. Here, we establish a synthetic microbial community to dissect how different siderophores, their uptake compatibility and spatial structure shape iron competition. Using Corynebacterium glutamicum as a model, we show that this siderophore non-producer accesses diverse xenosiderophores, including enterobactin secreted by Escherichia coli. However, exploitation was constrained and co-cultures converged to stable compositions. Dose-response experiments combined with mathematical modelling indicated that the producer retains more effective access to enterobactin than the exploiter. Presence of Pseudomonas putida altered this interaction, as it exploited enterobactin while producing pyoverdine, a siderophore inaccessible to the other community members that restricted their iron access. Across different cultivation scales, community dynamics was strongly influenced by spatial organization and initial composition. These findings identify siderophores as context-dependent iron-allocation agents that can promote microbial coexistence or exclusion.

Matching journals

The top 3 journals account for 50% of the predicted probability mass.

1
The ISME Journal
228 papers in training set
Top 0.1%
30.9%
2
Proceedings of the National Academy of Sciences
2444 papers in training set
Top 2%
12.6%
3
Nature Communications
5641 papers in training set
Top 18%
9.7%
50% of probability mass above
4
mBio
833 papers in training set
Top 3%
5.5%
5
eLife
5828 papers in training set
Top 25%
4.8%
6
ISME Communications
120 papers in training set
Top 0.8%
3.2%
7
Nature Microbiology
155 papers in training set
Top 1%
2.6%
8
Philosophical Transactions of the Royal Society B: Biological Sciences
72 papers in training set
Top 0.4%
2.4%
9
Science Advances
1243 papers in training set
Top 15%
2.4%
10
PLOS Biology
486 papers in training set
Top 4%
2.1%
11
mSystems
394 papers in training set
Top 4%
1.7%
12
Cell Host & Microbe
10 papers in training set
Top 0.2%
1.7%
13
microLife
22 papers in training set
Top 0.2%
1.7%
14
Cell Reports
1498 papers in training set
Top 20%
1.7%
15
Cell Systems
201 papers in training set
Top 4%
1.1%
16
iScience
1154 papers in training set
Top 32%
0.9%
17
PLOS Computational Biology
1863 papers in training set
Top 20%
0.8%
18
Environmental Microbiology
133 papers in training set
Top 3%
0.8%
19
Communications Biology
993 papers in training set
Top 30%
0.8%
20
Proceedings of the Royal Society B: Biological Sciences
393 papers in training set
Top 6%
0.8%
21
Microbiome
154 papers in training set
Top 3%
0.6%
22
Nature Ecology & Evolution
113 papers in training set
Top 2%
0.6%
23
Nature Chemical Biology
119 papers in training set
Top 3%
0.6%