Back

Persistent Microglial HIV Infection Drives Neuroinflammation Despite Viral Suppression: Insights from Rapid Postmortem Brain Biopsies

Nühn, M. M.; Sabet, N.; Zuidmeer, N.; van Abeelen, K. C. J.; Hermans, L. E.; Schipper, P. J.; Kübler, R.; Basson, A. E.; Omar, T.; Variava, E.; Martinson, N. A.; Giacopazzi, S.; Venter, W. D. F.; Muraro, M. J.; Wensing, A. M.; de Witte, L. D.; Papathanasopoulos, M. A.; Nijhuis, M.; Symons, J.

2026-05-25 neuroscience
10.64898/2026.05.20.726582 bioRxiv
Show abstract

Despite suppressive antiretroviral therapy (ART), HIV persists in the central nervous system (CNS) and contributes to HIV-associated neurocognitive disorder (HAND), but cell type-specific effects remain poorly defined. Using fluorescence-activated nuclei sorting of postmortem brain tissue of aviremic and viremic deceased people with HIV (DPWH) and HIV-negative individuals, we quantified the size of the HIV CNS reservoir and transcriptional alterations. Microglia were identified as the dominant CNS reservoir, harboring 103-10 HIV DNA copies per million cells by ddPCR-LTR assay in both aviremic and viremic DPWH. Bulk RNA-sequencing revealed immune pathway upregulation specifically in microglia, and downregulation of synaptic and homeostatic pathways across cell-types in viremic compared to aviremic individuals. ART partially mitigated microglial transcriptional dysregulation, but transcriptional profiles did not restore profiles to HIV-negative levels. Notably, persistent microglial infection was associated with transcriptional changes in other cell-types, underscoring microglia as a key therapeutical target for CNS-directed HIV cure strategies.

Matching journals

The top 7 journals account for 50% of the predicted probability mass.

1
Nature Communications
4913 papers in training set
Top 7%
18.1%
2
Cell Reports
1338 papers in training set
Top 5%
8.2%
3
eLife
5422 papers in training set
Top 12%
6.6%
4
Nature Neuroscience
216 papers in training set
Top 1%
6.6%
5
EMBO Molecular Medicine
85 papers in training set
Top 0.4%
4.2%
6
Neuron
282 papers in training set
Top 4%
3.9%
7
Immunity
58 papers in training set
Top 1%
3.9%
50% of probability mass above
8
Science Advances
1098 papers in training set
Top 7%
3.5%
9
Science Translational Medicine
111 papers in training set
Top 1%
3.5%
10
JCI Insight
241 papers in training set
Top 2%
3.5%
11
Cell Reports Medicine
140 papers in training set
Top 2%
3.0%
12
Science
429 papers in training set
Top 13%
2.0%
13
Journal of Clinical Investigation
164 papers in training set
Top 2%
2.0%
14
Journal of Experimental Medicine
106 papers in training set
Top 2%
2.0%
15
Advanced Science
249 papers in training set
Top 9%
2.0%
16
Nature Microbiology
133 papers in training set
Top 2%
1.8%
17
Proceedings of the National Academy of Sciences
2130 papers in training set
Top 32%
1.7%
18
Nature
575 papers in training set
Top 11%
1.6%
19
PLOS Pathogens
721 papers in training set
Top 6%
1.4%
20
Journal of Neuroinflammation
50 papers in training set
Top 0.6%
1.3%
21
Cell
370 papers in training set
Top 14%
1.3%
22
mBio
750 papers in training set
Top 9%
1.2%
23
eBioMedicine
130 papers in training set
Top 3%
0.9%
24
Nature Genetics
240 papers in training set
Top 7%
0.9%
25
Cell Stem Cell
57 papers in training set
Top 2%
0.9%
26
Nature Medicine
117 papers in training set
Top 5%
0.8%
27
Developmental Cell
168 papers in training set
Top 12%
0.7%
28
Neuropsychopharmacology
134 papers in training set
Top 3%
0.7%
29
PLOS Biology
408 papers in training set
Top 24%
0.6%